Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

23377055 .. 23394935

Gene Structure 17881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG107800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGATGAGCGTGAGAGAAGAGATGGAGAAGCTGAGCATTGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCAGAACTCTCCAGGACCCCGACCAGGTTCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGAACCACCCACCGCTCTGATCTTTTTATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

144

Amino Acids

16.24

Weight (kDa)

5.49

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	27 - 133	3.9e-28	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	7 cut(s)	115, 120, 130, 150, 207, 319, 412
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	93, 234, 246
AluBI	AGCT	3 cut(s)	34, 139, 398
AluI	AGCT	3 cut(s)	34, 139, 398
Alw21I	GWGCWC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	238
AsuII	TTCGAA	1 cut(s)	348
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	3 cut(s)	95, 236, 248
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	95, 236, 248
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	240, 268, 403
BmrFI	CCNGG	3 cut(s)	95, 236, 248
BmsI	GCATC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	3 cut(s)	77, 98, 218
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	282, 320
BsaHI	GRCGYC	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	2 cut(s)	179, 269
BseBI	CCWGG	3 cut(s)	95, 236, 248
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	136, 323
Bsh1285I	CGRYCG	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	180, 270
BslFI	GGGAC	2 cut(s)	182, 206
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	182, 206
BsoBI	CYCGRG	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	73, 324, 418
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	7 cut(s)	115, 120, 130, 150, 207, 319, 412
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	240, 268, 403
BspT104I	TTCGAA	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	414
BsrFI	RCCGGY	2 cut(s)	179, 269
BssAI	RCCGGY	2 cut(s)	179, 269
BssMI	GATC	3 cut(s)	73, 324, 418
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	3 cut(s)	95, 236, 248
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	35, 372
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	3 cut(s)	76, 327, 421
BstMBI	GATC	3 cut(s)	73, 324, 418
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	3 cut(s)	95, 236, 248
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	3 cut(s)	93, 234, 246
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	141
Cfr10I	RCCGGY	2 cut(s)	179, 269
Cfr13I	GGNCC	1 cut(s)	238
CsiI	ACCWGGT	1 cut(s)	246
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	5 cut(s)	34, 139, 273, 302, 398
CviKI_1	RGCY	5 cut(s)	34, 139, 273, 302, 398
DdeI	CTNAG	2 cut(s)	35, 372
DpnI	GATC	3 cut(s)	75, 326, 420
DpnII	GATC	3 cut(s)	73, 324, 418
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	3 cut(s)	93, 234, 246
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	1 cut(s)	295
FaiI	YATR	3 cut(s)	293, 386, 428
FaqI	GGGAC	2 cut(s)	182, 206
FatI	CATG	1 cut(s)	291
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	1 cut(s)	258
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	141
GsuI	CTGGAG	3 cut(s)	77, 98, 218
HapII	CCGG	2 cut(s)	180, 270
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	295
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	2 cut(s)	180, 270
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	173, 391, 418
Hpy188III	TCNNGA	2 cut(s)	77, 283
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	3 cut(s)	260, 263, 266
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	219, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	35, 372
HpySE526I	ACGT	2 cut(s)	219, 261
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	73, 324, 418
LweI	GCATC	1 cut(s)	180
MabI	ACCWGGT	1 cut(s)	246
MaeII	ACGT	2 cut(s)	219, 261
MalI	GATC	3 cut(s)	75, 326, 420
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	3 cut(s)	73, 324, 418
MboII	GAAGA	4 cut(s)	32, 80, 298, 388
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	196
MspI	CCGG	2 cut(s)	180, 270
MspR9I	CCNGG	3 cut(s)	95, 236, 248
MvaI	CCWGG	3 cut(s)	95, 236, 248
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	3 cut(s)	73, 324, 418
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	3 cut(s)	240, 268, 403
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	348
PaeR7I	CTCGAG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfoI	TCCNGGA	2 cut(s)	93, 234
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	93, 234, 246
PspGI	CCWGG	3 cut(s)	93, 234, 246
PspN4I	GGNNCC	3 cut(s)	240, 268, 403
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	257
Sau3AI	GATC	3 cut(s)	73, 324, 418
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	3 cut(s)	95, 236, 248
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	9 cut(s)	36, 84, 141, 165, 222, 252, 264, 366, 400
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	348
SgrDI	CGTCGACG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	3 cut(s)	134, 297, 335
SmoI	CTYRAG	3 cut(s)	134, 297, 335
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	7 cut(s)	115, 120, 130, 150, 207, 319, 412
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	93, 234, 246
TaiI	ACGT	2 cut(s)	222, 264
TaqI	TCGA	4 cut(s)	135, 258, 282, 348
TasI	AATT	1 cut(s)	343
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	268, 408
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	238
XceI	RCATGY	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	258
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.