Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

25661330 .. 25662157

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGAAGCTGAGCGTTGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCGGAACTCTCCAGGACCCCGACCAGGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTACAGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

141

Amino Acids

15.61

Weight (kDa)

6.59

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	19 - 134	4.9e-30	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	242
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	6 cut(s)	91, 96, 106, 126, 183, 295
AcuI	CTGAAG	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	3 cut(s)	69, 210, 222
AluBI	AGCT	3 cut(s)	10, 115, 374
AluI	AGCT	3 cut(s)	10, 115, 374
Alw21I	GWGCWC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	214, 226
AsuC2I	CCSGG	1 cut(s)	201
AsuII	TTCGAA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	214, 226
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BccI	CCATC	1 cut(s)	400
BciT130I	CCWGG	3 cut(s)	71, 212, 224
BcnI	CCSGG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	414
BlpI	GCTNAGC	1 cut(s)	11
Bme1390I	CCNGG	4 cut(s)	71, 201, 212, 224
Bme18I	GGWCC	2 cut(s)	214, 226
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	214, 226
BmiI	GGNNCC	3 cut(s)	216, 244, 411
BmrFI	CCNGG	4 cut(s)	71, 201, 212, 224
BmsI	GCATC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	3 cut(s)	53, 74, 194
Bpu1102I	GCTNAGC	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	258, 296
BpuMI	CCSGG	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	2 cut(s)	155, 245
BseBI	CCWGG	3 cut(s)	71, 212, 224
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseRI	GAGGAG	2 cut(s)	112, 299
BseYI	CCCAGC	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	156, 201, 246
BslFI	GGGAC	2 cut(s)	158, 182
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	158, 182
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	49, 300
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	6 cut(s)	91, 96, 106, 126, 183, 295
BspLI	GGNNCC	3 cut(s)	216, 244, 411
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	242
BsrFI	RCCGGY	2 cut(s)	155, 245
BssAI	RCCGGY	2 cut(s)	155, 245
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	49, 300
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	3 cut(s)	71, 212, 224
Bst4CI	ACNGT	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	117, 390
BstDEI	CTNAG	2 cut(s)	11, 348
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	52, 303
BstMBI	GATC	2 cut(s)	49, 300
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 416
BstNI	CCWGG	3 cut(s)	71, 212, 224
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	4 cut(s)	69, 199, 210, 222
BstSFI	CTRYAG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	117, 390
Cfr10I	RCCGGY	2 cut(s)	155, 245
Cfr13I	GGNCC	2 cut(s)	214, 226
CsiI	ACCWGGT	1 cut(s)	222
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	6 cut(s)	10, 115, 249, 278, 374, 410
CviKI_1	RGCY	6 cut(s)	10, 115, 249, 278, 374, 410
DdeI	CTNAG	2 cut(s)	11, 348
DpnI	GATC	2 cut(s)	51, 302
DpnII	GATC	2 cut(s)	49, 300
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	214, 226
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	2 cut(s)	214, 226
EcoRII	CCWGG	3 cut(s)	69, 210, 222
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	1 cut(s)	271
FaiI	YATR	2 cut(s)	269, 362
FaqI	GGGAC	2 cut(s)	158, 182
FatI	CATG	1 cut(s)	267
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	234
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	3 cut(s)	53, 74, 194
HapII	CCGG	3 cut(s)	156, 201, 246
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	3 cut(s)	156, 201, 246
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	149, 367
Hpy188III	TCNNGA	2 cut(s)	53, 259
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	3 cut(s)	236, 239, 242
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	2 cut(s)	195, 237
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 416
HpyF3I	CTNAG	2 cut(s)	11, 348
HpySE526I	ACGT	2 cut(s)	195, 237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	49, 300
LmnI	GCTCC	1 cut(s)	415
LweI	GCATC	1 cut(s)	156
MabI	ACCWGGT	1 cut(s)	222
MaeII	ACGT	2 cut(s)	195, 237
MalI	GATC	2 cut(s)	51, 302
MboI	GATC	2 cut(s)	49, 300
MboII	GAAGA	3 cut(s)	56, 274, 364
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	319
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	172
MspI	CCGG	3 cut(s)	156, 201, 246
MspR9I	CCNGG	4 cut(s)	71, 201, 212, 224
MvaI	CCWGG	3 cut(s)	71, 212, 224
MwoI	GCNNNNNNNGC	2 cut(s)	125, 416
NciI	CCSGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	49, 300
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	216, 244, 411
NspI	RCATGY	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PflFI	GACNNNGTC	1 cut(s)	224
PfoI	TCCNGGA	2 cut(s)	69, 210
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	2 cut(s)	214, 226
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	2 cut(s)	214, 226
Psp6I	CCWGG	3 cut(s)	69, 210, 222
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	3 cut(s)	69, 210, 222
PspN4I	GGNNCC	3 cut(s)	216, 244, 411
PspPI	GGNCC	2 cut(s)	214, 226
PspPPI	RGGWCCY	2 cut(s)	214, 226
PspXI	VCTCGAGB	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	49, 300
Sau96I	GGNCC	2 cut(s)	214, 226
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	4 cut(s)	71, 201, 212, 224
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	9 cut(s)	12, 60, 117, 141, 198, 228, 240, 342, 376
SexAI	ACCWGGT	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	414
Sfr274I	CTCGAG	1 cut(s)	110
SfuI	TTCGAA	1 cut(s)	324
SgrDI	CGTCGACG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	214, 226
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	3 cut(s)	110, 273, 311
SmoI	CTYRAG	3 cut(s)	110, 273, 311
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	6 cut(s)	91, 96, 106, 126, 183, 295
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	69, 199, 210, 222
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	2 cut(s)	198, 240
TaqI	TCGA	4 cut(s)	111, 234, 258, 324
TasI	AATT	1 cut(s)	319
TscAI	CASTG	1 cut(s)	39
TspDTI	ATGAA	2 cut(s)	244, 384
TspRI	CASTG	1 cut(s)	39
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	214, 226
XceI	RCATGY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	234
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.