Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

33711323 .. 33712143

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGAAGGGGCCGACGACGATGAGCATGAGCGTGAGAGCAGAGATGGAGAAGCTGAGCGTGGAGCAGCTCAAAGCAGTGAAAGAGCAGACTGATCTGGAAGTCAATCTCCTCAACGACTCCCTCAACAACATCCGCTCCGCCACCACCCGCCTCGAACTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGCCCCTCCGGCAAGAAGATGCTCGTCCCTCTCACCGCCTCCCTCTACGTCCCCGGAACTCTCCAGGATCCCGACCAGGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAGGCCAAAGACTACTGCGACCGCAAGATCAGCCTCCTCAAGTCCAATTTCGAACAACTCATCGAGGTTGCTTCTAAGAAGAAAAGCATTTCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCGGCATCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

157

Amino Acids

17.18

Weight (kDa)

6.6

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	34 - 149	3e-28	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	7 cut(s)	136, 141, 151, 171, 193, 228, 340
AclWI	GGATC	2 cut(s)	254, 267
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	282
AjnI	CCWGG	2 cut(s)	255, 267
AluBI	AGCT	3 cut(s)	55, 70, 419
AluI	AGCT	3 cut(s)	55, 70, 419
AlwI	GGATC	2 cut(s)	254, 267
AoxI	GGCC	2 cut(s)	11, 321
ApeKI	GCWGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	11, 271
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	271
AxyI	CCTNAGG	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	40, 445
BciT130I	CCWGG	2 cut(s)	257, 269
BcnI	CCSGG	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	1 cut(s)	68
BlpI	GCTNAGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	3 cut(s)	246, 257, 269
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	11, 271
BmiI	GGNNCC	4 cut(s)	12, 261, 289, 456
BmrFI	CCNGG	3 cut(s)	246, 257, 269
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 170, 200
Bse118I	RCCGGY	1 cut(s)	290
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	257, 269
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	47, 332
BseRI	GAGGAG	3 cut(s)	101, 157, 344
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	419
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	13, 323
BshNI	GGYRCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	340
BsiSI	CCGG	4 cut(s)	201, 246, 291, 458
BslFI	GGGAC	2 cut(s)	203, 227
BsmFI	GGGAC	2 cut(s)	203, 227
BsnI	GGCC	2 cut(s)	13, 323
Bsp119I	TTCGAA	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	94, 259, 345
Bsp1720I	GCTNAGC	1 cut(s)	56
BspACI	CCGC	7 cut(s)	136, 141, 151, 171, 193, 228, 340
BspANI	GGCC	2 cut(s)	13, 323
BspCNI	CTCAG	2 cut(s)	48, 331
BspLI	GGNNCC	4 cut(s)	12, 261, 289, 456
BspPI	GGATC	2 cut(s)	254, 267
BspT104I	TTCGAA	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	287
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	3 cut(s)	94, 259, 345
BssNI	GRCGYC	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	257, 269
BstACI	GRCGYC	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	4 cut(s)	56, 318, 393, 465
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	3 cut(s)	97, 262, 348
BstMBI	GATC	3 cut(s)	94, 259, 345
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 201, 348
BstNI	CCWGG	2 cut(s)	257, 269
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	3 cut(s)	244, 255, 267
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	13, 323
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	11, 271
CsiI	ACCWGGT	1 cut(s)	267
CviAII	CATG	2 cut(s)	28, 313
CviJI	RGCY	8 cut(s)	13, 55, 70, 294, 323, 351, 419, 455
CviKI_1	RGCY	8 cut(s)	13, 55, 70, 294, 323, 351, 419, 455
DdeI	CTNAG	4 cut(s)	56, 318, 393, 465
DpnI	GATC	3 cut(s)	96, 261, 347
DpnII	GATC	3 cut(s)	94, 259, 345
EciI	GGCGGA	3 cut(s)	130, 160, 182
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	464
Eco81I	CCTNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	255, 267
FaeI	CATG	2 cut(s)	31, 316
FaiI	YATR	2 cut(s)	29, 314
FaqI	GGGAC	2 cut(s)	203, 227
FatI	CATG	2 cut(s)	27, 312
FauI	CCCGC	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	13, 323
HapII	CCGG	4 cut(s)	201, 246, 291, 458
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	31, 316
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	4 cut(s)	201, 246, 291, 458
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	3 cut(s)	98, 263, 304
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	5 cut(s)	19, 22, 281, 284, 287
HpyCH4IV	ACGT	2 cut(s)	240, 282
HpyCH4V	TGCA	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 201, 348
HpyF3I	CTNAG	4 cut(s)	56, 318, 393, 465
HpySE526I	ACGT	2 cut(s)	240, 282
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	31, 316
Kzo9I	GATC	3 cut(s)	94, 259, 345
LmnI	GCTCC	3 cut(s)	64, 143, 460
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	201
MabI	ACCWGGT	1 cut(s)	267
MaeII	ACGT	2 cut(s)	240, 282
MalI	GATC	3 cut(s)	96, 261, 347
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	3 cut(s)	94, 259, 345
MboII	GAAGA	3 cut(s)	220, 319, 409
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	4 cut(s)	201, 246, 291, 458
MspR9I	CCNGG	3 cut(s)	246, 257, 269
MvaI	CCWGG	2 cut(s)	257, 269
MwoI	GCNNNNNNNGC	3 cut(s)	170, 201, 348
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	3 cut(s)	94, 259, 345
NlaIII	CATG	2 cut(s)	31, 316
NlaIV	GGNNCC	4 cut(s)	12, 261, 289, 456
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	369
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	255, 267
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	2 cut(s)	255, 267
PspN4I	GGNNCC	4 cut(s)	12, 261, 289, 456
PspPI	GGNCC	2 cut(s)	11, 271
PspPPI	RGGWCCY	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	278
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	3 cut(s)	94, 259, 345
Sau96I	GGNCC	2 cut(s)	11, 271
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	3 cut(s)	246, 257, 269
SetI	ASST	8 cut(s)	57, 72, 186, 243, 273, 285, 387, 421
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	369
SgrDI	CGTCGACG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	7 cut(s)	136, 141, 151, 171, 193, 228, 340
StyD4I	CCNGG	3 cut(s)	244, 255, 267
TaiI	ACGT	2 cut(s)	243, 285
TaqI	TCGA	5 cut(s)	156, 279, 303, 369, 381
TasI	AATT	1 cut(s)	364
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	289, 429
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	271
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.