Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Reverse (-)

7300863 .. 7301758

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G004540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCGATGAGCGTGAGAGAAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCACTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCTCCTCCTCCATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCTGGAACTCTCCAGGACCCCGACCAGGTCCTCAAGAACATGCCTCAAGCCAAAGACTACTGTGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTACAGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

126

Amino Acids

14.06

Weight (kDa)

5.52

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	14 - 119	7.1e-11	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	115, 120, 130, 168, 250
AcuI	CTGAAG	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	4 cut(s)	93, 184, 195, 207
AluBI	AGCT	3 cut(s)	34, 139, 329
AluI	AGCT	3 cut(s)	34, 139, 329
Alw21I	GWGCWC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	199, 211
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	199, 211
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	2 cut(s)	19, 355
BciT130I	CCWGG	4 cut(s)	95, 186, 197, 209
BfmI	CTRYAG	1 cut(s)	369
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	4 cut(s)	95, 186, 197, 209
Bme18I	GGWCC	2 cut(s)	199, 211
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	199, 211
BmiI	GGNNCC	2 cut(s)	201, 366
BmrFI	CCNGG	4 cut(s)	95, 186, 197, 209
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	3 cut(s)	77, 98, 179
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	3 cut(s)	200, 213, 251
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
BseBI	CCWGG	4 cut(s)	95, 186, 197, 209
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	3 cut(s)	133, 136, 254
BseYI	CCCAGC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	134
BslFI	GGGAC	2 cut(s)	143, 167
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	143, 167
BsoBI	CYCGRG	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	73, 255
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	5 cut(s)	115, 120, 130, 168, 250
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	201, 366
BspT104I	TTCGAA	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	73, 255
Bst2UI	CCWGG	4 cut(s)	95, 186, 197, 209
Bst4CI	ACNGT	2 cut(s)	245, 378
Bst6I	CTCTTC	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	35, 303
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	76, 258
BstMBI	GATC	2 cut(s)	73, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	4 cut(s)	95, 186, 197, 209
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	4 cut(s)	93, 184, 195, 207
BstSFI	CTRYAG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	199, 211
CsiI	ACCWGGT	1 cut(s)	207
CviAII	CATG	2 cut(s)	151, 223
CviJI	RGCY	5 cut(s)	34, 139, 233, 329, 365
CviKI_1	RGCY	5 cut(s)	34, 139, 233, 329, 365
DdeI	CTNAG	2 cut(s)	35, 303
DpnI	GATC	2 cut(s)	75, 257
DpnII	GATC	2 cut(s)	73, 255
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	199, 211
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	2 cut(s)	199, 211
EcoRII	CCWGG	4 cut(s)	93, 184, 195, 207
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	2 cut(s)	154, 226
FaiI	YATR	3 cut(s)	152, 224, 317
FaqI	GGGAC	2 cut(s)	143, 167
FatI	CATG	2 cut(s)	150, 222
FauI	CCCGC	1 cut(s)	137
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	3 cut(s)	77, 98, 179
Hin1II	CATG	2 cut(s)	154, 226
HinfI	GANTC	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	77, 217
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	245, 378
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	35, 303
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	154, 226
Kzo9I	GATC	2 cut(s)	73, 255
LmnI	GCTCC	2 cut(s)	43, 370
MabI	ACCWGGT	1 cut(s)	207
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	75, 257
MboI	GATC	2 cut(s)	73, 255
MboII	GAAGA	3 cut(s)	32, 80, 319
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	92
MspR9I	CCNGG	4 cut(s)	95, 186, 197, 209
MvaI	CCWGG	4 cut(s)	95, 186, 197, 209
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	2 cut(s)	73, 255
NlaIII	CATG	2 cut(s)	154, 226
NlaIV	GGNNCC	2 cut(s)	201, 366
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PflFI	GACNNNGTC	1 cut(s)	209
PfoI	TCCNGGA	2 cut(s)	93, 195
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PpuMI	RGGWCCY	2 cut(s)	199, 211
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	2 cut(s)	199, 211
Psp6I	CCWGG	4 cut(s)	93, 184, 195, 207
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	4 cut(s)	93, 184, 195, 207
PspN4I	GGNNCC	2 cut(s)	201, 366
PspPI	GGNCC	2 cut(s)	199, 211
PspPPI	RGGWCCY	2 cut(s)	199, 211
PspXI	VCTCGAGB	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	73, 255
Sau96I	GGNCC	2 cut(s)	199, 211
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	4 cut(s)	95, 186, 197, 209
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	7 cut(s)	36, 84, 141, 183, 213, 297, 331
SexAI	ACCWGGT	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	2 cut(s)	199, 211
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	4 cut(s)	134, 215, 228, 266
SmoI	CTYRAG	4 cut(s)	134, 215, 228, 266
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	5 cut(s)	115, 120, 130, 168, 250
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	4 cut(s)	93, 184, 195, 207
TaaI	ACNGT	2 cut(s)	245, 378
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	135, 279
TasI	AATT	1 cut(s)	274
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	63
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	199, 211
XceI	RCATGY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.