Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Reverse (-)

45338380 .. 45340553

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG243300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGTGCAAAATTGGAACCTGATGTTGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGCGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCAGCAAAAAAATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCAGAACTCTCAAGGACCCCGACCAGGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

178

Amino Acids

19.87

Weight (kDa)

9.3

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	71 - 148	4.6e-19	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	6 cut(s)	247, 252, 262, 282, 339, 450
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	119, 184
AjnI	CCWGG	2 cut(s)	225, 378
AluBI	AGCT	4 cut(s)	58, 166, 271, 529
AluI	AGCT	4 cut(s)	58, 166, 271, 529
Alw21I	GWGCWC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	370, 382
AsuII	TTCGAA	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	370, 382
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	2 cut(s)	127, 151
BciT130I	CCWGG	2 cut(s)	227, 380
BfaI	CTAG	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	227, 380
Bme18I	GGWCC	2 cut(s)	370, 382
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	370, 382
BmiI	GGNNCC	3 cut(s)	90, 372, 400
BmrFI	CCNGG	2 cut(s)	227, 380
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	2 cut(s)	209, 230
Bpu1102I	GCTNAGC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	479
BpuEI	CTTGAG	3 cut(s)	350, 414, 451
BsaHI	GRCGYC	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	227, 380
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	3 cut(s)	165, 268, 454
BseYI	CCCAGC	1 cut(s)	529
Bsh1285I	CGRYCG	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	2 cut(s)	314, 338
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	314, 338
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	121, 205, 455
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	6 cut(s)	247, 252, 262, 282, 339, 450
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	90, 372, 400
BspT104I	TTCGAA	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	401
BssMI	GATC	3 cut(s)	121, 205, 455
BssNI	GRCGYC	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	227, 380
Bst4CI	ACNGT	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	56, 273
BstDEI	CTNAG	2 cut(s)	167, 503
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	3 cut(s)	124, 208, 458
BstMBI	GATC	3 cut(s)	121, 205, 455
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	2 cut(s)	227, 380
BstNSI	RCATGY	2 cut(s)	116, 427
BstSCI	CCNGG	2 cut(s)	225, 378
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	82, 195
Cac8I	GCNNGC	2 cut(s)	56, 273
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	370, 382
CsiI	ACCWGGT	1 cut(s)	378
CviAII	CATG	2 cut(s)	113, 424
CviJI	RGCY	6 cut(s)	58, 166, 271, 405, 434, 529
CviKI_1	RGCY	6 cut(s)	58, 166, 271, 405, 434, 529
DdeI	CTNAG	2 cut(s)	167, 503
DpnI	GATC	3 cut(s)	123, 207, 457
DpnII	GATC	3 cut(s)	121, 205, 455
EciI	GGCGGA	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	370, 382
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	370, 382
EcoRII	CCWGG	2 cut(s)	225, 378
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	2 cut(s)	116, 427
FaiI	YATR	4 cut(s)	108, 114, 425, 517
FaqI	GGGAC	2 cut(s)	314, 338
FatI	CATG	2 cut(s)	112, 423
FauI	CCCGC	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	390
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	2 cut(s)	209, 230
HapII	CCGG	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	116, 427
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	44, 230
HpaII	CCGG	1 cut(s)	402
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	67, 305, 522
Hpy188III	TCNNGA	2 cut(s)	209, 415
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	3 cut(s)	392, 395, 398
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	351, 393
HpyCH4V	TGCA	2 cut(s)	80, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	167, 503
HpySE526I	ACGT	2 cut(s)	351, 393
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	116, 427
Kzo9I	GATC	3 cut(s)	121, 205, 455
LmnI	GCTCC	1 cut(s)	175
MabI	ACCWGGT	1 cut(s)	378
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	351, 393
MalI	GATC	3 cut(s)	123, 207, 457
MboI	GATC	3 cut(s)	121, 205, 455
MboII	GAAGA	5 cut(s)	131, 142, 212, 430, 519
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	83, 474
MlyI	GAGTC	2 cut(s)	38, 224
MmeI	TCCRAC	1 cut(s)	328
MseI	TTAA	1 cut(s)	71
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	227, 380
MvaI	CCWGG	2 cut(s)	227, 380
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	3 cut(s)	121, 205, 455
NlaIII	CATG	2 cut(s)	116, 427
NlaIV	GGNNCC	3 cut(s)	90, 372, 400
NspI	RCATGY	2 cut(s)	116, 427
NspV	TTCGAA	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	225
PleI	GAGTC	2 cut(s)	38, 224
PpsI	GAGTC	2 cut(s)	38, 224
PpuMI	RGGWCCY	2 cut(s)	370, 382
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	2 cut(s)	370, 382
Psp6I	CCWGG	2 cut(s)	225, 378
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	2 cut(s)	225, 378
PspN4I	GGNNCC	3 cut(s)	90, 372, 400
PspPI	GGNCC	2 cut(s)	370, 382
PspPPI	RGGWCCY	2 cut(s)	370, 382
PspXI	VCTCGAGB	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	71
Sau3AI	GATC	3 cut(s)	121, 205, 455
Sau96I	GGNCC	2 cut(s)	370, 382
SchI	GAGTC	2 cut(s)	38, 224
ScrFI	CCNGG	2 cut(s)	227, 380
SduI	GDGCHC	1 cut(s)	273
SexAI	ACCWGGT	1 cut(s)	378
Sfr274I	CTCGAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	479
SgrDI	CGTCGACG	1 cut(s)	389
SinI	GGWCC	2 cut(s)	370, 382
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	4 cut(s)	266, 365, 429, 466
SmoI	CTYRAG	4 cut(s)	266, 365, 429, 466
Sse9I	AATT	2 cut(s)	83, 474
SsiI	CCGC	6 cut(s)	247, 252, 262, 282, 339, 450
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	225, 378
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	2 cut(s)	354, 396
TaqI	TCGA	6 cut(s)	124, 267, 390, 414, 446, 479
TasI	AATT	2 cut(s)	83, 474
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	2 cut(s)	82, 195
TspDTI	ATGAA	1 cut(s)	400
TspRI	CASTG	2 cut(s)	82, 195
Tth111I	GACNNNGTC	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	370, 382
XceI	RCATGY	2 cut(s)	116, 427
XhoI	CTCGAG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.