Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

73569515 .. 73569751

Gene Structure 237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34312

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATGCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCGCCCTCCATGACCTCTCCCTCCGACCCACCGGAAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCGGAACTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

78

Amino Acids

8.58

Weight (kDa)

6.56

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	27 - 78	4.5e-08	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	116
AciI	CCGC	4 cut(s)	120, 130, 150, 207
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	34, 139
AluI	AGCT	2 cut(s)	34, 139
Alw21I	GWGCWC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	225
AvaI	CYCGRG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	235
BlpI	GCTNAGC	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	95, 225
BmeT110I	CYCGRG	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	95, 225
BmsI	GCATC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	2 cut(s)	77, 98
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	33, 136
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	180, 225
BslFI	GGGAC	2 cut(s)	182, 206
BsmFI	GGGAC	2 cut(s)	182, 206
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	73
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	4 cut(s)	120, 130, 150, 207
BspCNI	CTCAG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	93, 223
BtgZI	GCGATG	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	1 cut(s)	117
CviAII	CATG	2 cut(s)	112, 158
CviJI	RGCY	2 cut(s)	34, 139
CviKI_1	RGCY	2 cut(s)	34, 139
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	2 cut(s)	115, 161
FaiI	YATR	2 cut(s)	113, 159
FaqI	GGGAC	2 cut(s)	182, 206
FatI	CATG	2 cut(s)	111, 157
FauI	CCCGC	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	141
FspAI	RTGCGCAY	1 cut(s)	116
FspBI	CTAG	1 cut(s)	235
FspI	TGCGCA	1 cut(s)	116
GlaI	GCGC	1 cut(s)	116
GsuI	CTGGAG	2 cut(s)	77, 98
HapII	CCGG	2 cut(s)	180, 225
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	115, 161
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	2 cut(s)	180, 225
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	115, 161
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	4 cut(s)	62, 80, 107, 193
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	235
MaeII	ACGT	1 cut(s)	219
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	196
MspI	CCGG	2 cut(s)	180, 225
MspR9I	CCNGG	2 cut(s)	95, 225
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	115, 161
NsbI	TGCGCA	1 cut(s)	116
NspI	RCATGY	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	93
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspXI	VCTCGAGB	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	95, 225
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	36, 84, 141, 165, 222
SfaNI	GCATC	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	4 cut(s)	120, 130, 150, 207
SspMI	CTAG	1 cut(s)	235
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	93, 223
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	63
TspRI	CASTG	1 cut(s)	63
XceI	RCATGY	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	134
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.