Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

12664658 .. 12665548

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGACCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCCCGGAACTCTCCAGCACCCCGACCAGGTCCTCAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTAAAGCAGATGGCTCCTACAGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

124

Amino Acids

13.78

Weight (kDa)

7.81

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	14 - 117	3.8e-10	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	109, 114, 124, 162, 244
AfiI	CCNNNNNNNGG	2 cut(s)	46, 202
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	87, 201
AluBI	AGCT	3 cut(s)	28, 133, 323
AluI	AGCT	3 cut(s)	28, 133, 323
Alw21I	GWGCWC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	37, 205
AsuC2I	CCSGG	1 cut(s)	180
AsuII	TTCGAA	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	37, 205
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	2 cut(s)	13, 349
BciT130I	CCWGG	2 cut(s)	89, 203
BcnI	CCSGG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	363
BlpI	GCTNAGC	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	89, 180, 203
Bme18I	GGWCC	2 cut(s)	37, 205
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	37, 205
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	3 cut(s)	89, 180, 203
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	3 cut(s)	71, 92, 173
Bpu1102I	GCTNAGC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	3 cut(s)	194, 207, 245
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 202
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	89, 203
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	46, 202
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	3 cut(s)	27, 130, 248
BseYI	CCCAGC	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	137, 161
BslI	CCNNNNNNNGG	2 cut(s)	46, 202
BsmFI	GGGAC	2 cut(s)	137, 161
BsoBI	CYCGRG	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	67, 249
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	5 cut(s)	109, 114, 124, 162, 244
BspCNI	CTCAG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	2 cut(s)	67, 249
Bst2UI	CCWGG	2 cut(s)	89, 203
Bst4CI	ACNGT	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	135, 339
BstDEI	CTNAG	2 cut(s)	29, 297
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	70, 252
BstMBI	GATC	2 cut(s)	67, 249
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	2 cut(s)	89, 203
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	87, 178, 201
BstSFI	CTRYAG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	135, 339
Cfr13I	GGNCC	2 cut(s)	37, 205
CsiI	ACCWGGT	1 cut(s)	201
CviAII	CATG	2 cut(s)	145, 217
CviJI	RGCY	5 cut(s)	28, 133, 227, 323, 359
CviKI_1	RGCY	5 cut(s)	28, 133, 227, 323, 359
DdeI	CTNAG	2 cut(s)	29, 297
DpnI	GATC	2 cut(s)	69, 251
DpnII	GATC	2 cut(s)	67, 249
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	37, 205
Eco53kI	GAGCTC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	87, 201
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	2 cut(s)	148, 220
FaiI	YATR	3 cut(s)	146, 218, 311
FaqI	GGGAC	2 cut(s)	137, 161
FatI	CATG	2 cut(s)	144, 216
FauI	CCCGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	3 cut(s)	71, 92, 173
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	148, 220
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	71, 211
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	29, 297
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	148, 220
Kzo9I	GATC	2 cut(s)	67, 249
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	9 cut(s)	53, 56, 74, 101, 188, 193, 203, 215, 309
MabI	ACCWGGT	1 cut(s)	201
MaeII	ACGT	1 cut(s)	174
MalI	GATC	2 cut(s)	69, 251
MboI	GATC	2 cut(s)	67, 249
MboII	GAAGA	2 cut(s)	74, 313
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	86
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	3 cut(s)	89, 180, 203
MvaI	CCWGG	2 cut(s)	89, 203
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	67, 249
NlaIII	CATG	2 cut(s)	148, 220
NlaIV	GGNNCC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	87
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	87, 201
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	87, 201
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	37, 205
PspPPI	RGGWCCY	1 cut(s)	205
PspXI	VCTCGAGB	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	67, 249
Sau96I	GGNCC	2 cut(s)	37, 205
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	89, 180, 203
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	7 cut(s)	30, 78, 135, 177, 207, 291, 325
SexAI	ACCWGGT	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	363
Sfr274I	CTCGAG	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	2 cut(s)	37, 205
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	4 cut(s)	128, 209, 222, 260
SmoI	CTYRAG	4 cut(s)	128, 209, 222, 260
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	5 cut(s)	109, 114, 124, 162, 244
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	87, 178, 201
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	129, 273
TasI	AATT	1 cut(s)	268
TscAI	CASTG	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	57
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	37, 205
XceI	RCATGY	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.