Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Reverse (-)

34728669 .. 34730108

Gene Structure 1440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG194000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTTGGATTTTTCAAATCTGATTGAAATCTTGTGTTTGTTTTGCATTTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGTGCAAAATTGGAACTTGATGTTGATCGACTGAAGATGGCGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATATGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCACCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

124

Amino Acids

13.83

Weight (kDa)

5.82

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	271, 276, 286, 306, 363
AcuI	CTGAAG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	15, 26, 208
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	103, 190, 295
AluI	AGCT	3 cut(s)	103, 190, 295
Alw21I	GWGCWC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BccI	CCATC	2 cut(s)	151, 175
BciT130I	CCWGG	1 cut(s)	251
BfaI	CTAG	1 cut(s)	104
BlpI	GCTNAGC	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	191
BsaBI	GATNNNNATC	2 cut(s)	26, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	71
Bse8I	GATNNNNATC	2 cut(s)	26, 144
BseBI	CCWGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	267
BseJI	GATNNNNATC	2 cut(s)	26, 144
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	189, 292
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	145
Bsp1720I	GCTNAGC	1 cut(s)	191
BspACI	CCGC	5 cut(s)	271, 276, 286, 306, 363
BspCNI	CTCAG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	335
BssMI	GATC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	127, 219
Cac8I	GCNNGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	335
CviJI	RGCY	3 cut(s)	103, 190, 295
CviKI_1	RGCY	3 cut(s)	103, 190, 295
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	297
FaiI	YATR	1 cut(s)	233
FaqI	GGGAC	1 cut(s)	338
FauI	CCCGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	233
HapII	CCGG	1 cut(s)	336
HinfI	GANTC	2 cut(s)	89, 254
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	21, 112, 329
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	45, 125
HpyF3I	CTNAG	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	52, 236, 263, 349
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	104
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	166, 236
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	83, 248
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	9 cut(s)	167, 229, 299, 310, 313, 320, 329, 335, 366
MseI	TTAA	2 cut(s)	116, 373
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	249
PleI	GAGTC	2 cut(s)	83, 248
PpsI	GAGTC	2 cut(s)	83, 248
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspXI	VCTCGAGB	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	116, 373
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	83, 248
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	6 cut(s)	105, 192, 240, 297, 302, 321
SfaNI	GCATC	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	5 cut(s)	271, 276, 286, 306, 363
SspMI	CTAG	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	148, 291
TasI	AATT	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	116, 373
Tru9I	TTAA	2 cut(s)	116, 373
TscAI	CASTG	2 cut(s)	127, 219
TspRI	CASTG	2 cut(s)	127, 219
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.