Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Reverse (-)

219975 .. 221264

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGAAAAAAGCAAGTTGCCCCCATGCAGGATCGAACTACAGACCTTCAGTTTACAAGACTGACAGTCGCAGAGTTGGGAGCGAACAAACACAGAAGTCTCTGGAGTGTAGAGAGAGTGTTTAGAGAATCAATCGAGAGAGAGATGGAGAAGGAGAAGGCGATGAGCGTGAACGTGAGAGCGGAGATGGAGAAGCTGAGCCCTGAGCAGTTGAAGGCCGTCAAAGAACAAACCGATTTGGAAGTCAATCTTCTCCAGGACTCCCTCAACAACATCCGCACTGCCACCGCCCGCCTCGAGATCGCCACCTCCGCCCTCCACGACCTTTCCCTCCGCCCTCAGGGAAAGAAGATGCTCGTCCCTCTTACGGCGTCGCTTTATGTCCCCGGCACCCTCCACGACGCCCACCAAGTCCTGGTCGACGTTGGCACCGGCTACTTCATCGAGAAAACCATGCCTCAGGCCAAAGATTACTGCGAACGTAAGATCAGCTTGCTCAAATCTAATTTTGACCAACTTGTCGAGGTTGCTTCTAAAAAGAAAAGCATTGCAGATGAAGCCGGGGCTGTTTTGCAAGCCAAAGTGAAGCAGTTGGCTGCTACGACGTCGCAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

206

Amino Acids

22.98

Weight (kDa)

9.1

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	81 - 197	9.7e-30	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	518
AatII	GACGTC	1 cut(s)	608
AccB1I	GGYRCC	2 cut(s)	389, 428
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	6 cut(s)	182, 277, 288, 292, 312, 334
AclWI	GGATC	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	3 cut(s)	371, 402, 605
AfiI	CCNNNNNNNGG	4 cut(s)	28, 340, 367, 415
AgsI	TTSAA	1 cut(s)	214
AhdI	GACNNNNNGTC	1 cut(s)	65
AjnI	CCWGG	2 cut(s)	255, 414
AluBI	AGCT	2 cut(s)	196, 492
AluI	AGCT	2 cut(s)	196, 492
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	216, 462
ApeKI	GCWGC	1 cut(s)	596
AsuC2I	CCSGG	2 cut(s)	387, 562
AvaI	CYCGRG	1 cut(s)	296
AxyI	CCTNAGG	2 cut(s)	339, 459
BanI	GGYRCC	2 cut(s)	389, 428
BanII	GRGCYC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	2 cut(s)	139, 181
BceAI	ACGGC	2 cut(s)	203, 384
BciT130I	CCWGG	2 cut(s)	257, 416
BcnI	CCSGG	2 cut(s)	387, 562
BcoDI	GTCTC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	597
BlpI	GCTNAGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	598
Bme1390I	CCNGG	4 cut(s)	257, 387, 416, 562
BmeRI	GACNNNNNGTC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	391, 430
BmrFI	CCNGG	4 cut(s)	257, 387, 416, 562
BmsI	GCATC	1 cut(s)	342
BpmI	CTGGAG	2 cut(s)	124, 239
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	387, 562
BsaHI	GRCGYC	3 cut(s)	371, 402, 605
BsaJI	CCNNGG	2 cut(s)	385, 561
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 340, 367, 415
Bse118I	RCCGGY	1 cut(s)	431
Bse21I	CCTNAGG	2 cut(s)	339, 459
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	257, 416
BseDI	CCNNGG	2 cut(s)	385, 561
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	4 cut(s)	28, 340, 367, 415
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	4 cut(s)	188, 195, 353, 473
BseXI	GCAGC	1 cut(s)	583
BshFI	GGCC	2 cut(s)	218, 464
BshNI	GGYRCC	2 cut(s)	389, 428
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	387, 432, 561
BslFI	GGGAC	2 cut(s)	344, 368
BslI	CCNNNNNNNGG	4 cut(s)	28, 340, 367, 415
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	344, 368
BsnI	GGCC	2 cut(s)	218, 464
BsoBI	CYCGRG	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	31, 300, 486
Bsp1720I	GCTNAGC	1 cut(s)	197
BspACI	CCGC	6 cut(s)	182, 277, 288, 292, 312, 334
BspANI	GGCC	2 cut(s)	218, 464
BspCNI	CTCAG	4 cut(s)	189, 196, 352, 472
BspLI	GGNNCC	2 cut(s)	391, 430
BspPI	GGATC	1 cut(s)	39
BspT107I	GGYRCC	2 cut(s)	389, 428
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	385, 561
BssMI	GATC	3 cut(s)	31, 300, 486
BssNI	GRCGYC	3 cut(s)	371, 402, 605
Bst2UI	CCWGG	2 cut(s)	257, 416
Bst4CI	ACNGT	1 cut(s)	67
BstACI	GRCGYC	3 cut(s)	371, 402, 605
BstC8I	GCNNGC	3 cut(s)	292, 494, 576
BstDEI	CTNAG	4 cut(s)	197, 204, 339, 459
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	3 cut(s)	34, 303, 489
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	31, 300, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 557
BstNI	CCWGG	2 cut(s)	257, 416
BstSCI	CCNGG	4 cut(s)	255, 385, 414, 560
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	583
Bsu36I	CCTNAGG	2 cut(s)	339, 459
BsuRI	GGCC	2 cut(s)	218, 464
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	273
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	3 cut(s)	292, 494, 576
Cfr10I	RCCGGY	1 cut(s)	431
CseI	GACGC	2 cut(s)	360, 410
CviAII	CATG	2 cut(s)	25, 454
DdeI	CTNAG	4 cut(s)	197, 204, 339, 459
DpnI	GATC	3 cut(s)	33, 302, 488
DpnII	GATC	3 cut(s)	31, 300, 486
DrdI	GACNNNNNNGTC	1 cut(s)	518
DriI	GACNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	518
Eam1105I	GACNNNNNGTC	1 cut(s)	65
EciI	GGCGGA	2 cut(s)	301, 323
Eco24I	GRGCYC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	32
Eco81I	CCTNAGG	2 cut(s)	339, 459
Eco88I	CYCGRG	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	255, 414
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	2 cut(s)	28, 457
FaiI	YATR	3 cut(s)	26, 381, 455
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 476, 508
FaqI	GGGAC	2 cut(s)	344, 368
FatI	CATG	2 cut(s)	24, 453
FauI	CCCGC	1 cut(s)	299
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	597
GluI	GCNGC	1 cut(s)	597
GsuI	CTGGAG	2 cut(s)	124, 239
HaeIII	GGCC	2 cut(s)	218, 464
HapII	CCGG	3 cut(s)	387, 432, 561
HgaI	GACGC	2 cut(s)	360, 410
Hin1I	GRCGYC	3 cut(s)	371, 402, 605
Hin1II	CATG	2 cut(s)	28, 457
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	128, 260
HpaII	CCGG	3 cut(s)	387, 432, 561
Hpy166II	GTNNAC	3 cut(s)	54, 172, 421
Hpy188III	TCNNGA	4 cut(s)	103, 136, 298, 445
Hpy8I	GTNNAC	3 cut(s)	54, 172, 421
Hpy99I	CGWCG	5 cut(s)	376, 404, 425, 607, 610
HpyAV	CCTTC	4 cut(s)	56, 145, 151, 208
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	4 cut(s)	174, 423, 481, 605
HpyCH4V	TGCA	3 cut(s)	28, 551, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 557
HpyF3I	CTNAG	4 cut(s)	197, 204, 339, 459
HpySE526I	ACGT	4 cut(s)	174, 423, 481, 605
Hsp92I	GRCGYC	3 cut(s)	371, 402, 605
Hsp92II	CATG	2 cut(s)	28, 457
Kzo9I	GATC	3 cut(s)	31, 300, 486
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	4 cut(s)	174, 423, 481, 605
MalI	GATC	3 cut(s)	33, 302, 488
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	3 cut(s)	31, 300, 486
MboII	GAAGA	2 cut(s)	242, 361
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	505
MlyI	GAGTC	1 cut(s)	254
MspI	CCGG	3 cut(s)	387, 432, 561
MspR9I	CCNGG	4 cut(s)	257, 387, 416, 562
MvaI	CCWGG	2 cut(s)	257, 416
MwoI	GCNNNNNNNGC	2 cut(s)	311, 557
NciI	CCSGG	2 cut(s)	387, 562
NdeII	GATC	3 cut(s)	31, 300, 486
NlaIII	CATG	2 cut(s)	28, 457
NlaIV	GGNNCC	2 cut(s)	391, 430
PaeR7I	CTCGAG	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	415
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	255, 414
PspGI	CCWGG	2 cut(s)	255, 414
PspN4I	GGNNCC	2 cut(s)	391, 430
SalI	GTCGAC	1 cut(s)	419
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	3 cut(s)	31, 300, 486
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	4 cut(s)	257, 387, 416, 562
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	296
SlaI	CTCGAG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	6 cut(s)	182, 277, 288, 292, 312, 334
StyD4I	CCNGG	4 cut(s)	255, 385, 414, 560
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	4 cut(s)	177, 426, 484, 608
TaqI	TCGA	6 cut(s)	34, 135, 297, 420, 444, 522
TasI	AATT	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	2 cut(s)	430, 570
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.