Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001239

Physical Location & Seq

Genomic Coordinates Forward (+)

37901455 .. 37902348

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGATGAGCGTGAGAGAAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAAGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCAAGCTCACCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACAGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCCTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTGATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTACAGCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

139

Amino Acids

15.54

Weight (kDa)

8.97

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	27 - 132	2e-19	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23290
fragaria_vesca	FvH4_4g37090
malus_domestica	MD13G1003600.v1.1 MD16G1003800.v1.1
prunus_persica	Prupe.1G348800_v2.0.a1
pyrus_communis	pycom13g00310
rosa_chinensis	RchiOBHm_Chr1g0343381 RchiOBHm_Chr2g0169341 RchiOBHm_Chr3g0478071 RchiOBHm_Chr4g0389221 RchiOBHm_Chr4g0391031 RchiOBHm_Chr4g0391701 RchiOBHm_Chr4g0446851 RchiOBHm_Chr5g0039981 RchiOBHm_Chr5g0067401 RchiOBHm_Chr5g0070771 RchiOBHm_Chr6g0253901 RchiOBHm_Chr6g0266371 RchiOBHm_Chr6g0274601
rosa_laevigata	RLG00000005625
rosa_multiflora	Rmu_sc0004202.1_g000004
rosa_roxburghii	Rroxscaffold_5G00387210
rosa_rugosa	Rorug02G0613400 Rorug04G0375100
rosa_samantha	Rh2AG179300 Rh2AG241500 Rh2BG102100 Rh2CG104500 Rh2CG592400 Rh2DG185100 Rh2DG249500 Rh4AG107800 Rh4AG208800 Rh4AG436600 Rh4BG029100 Rh4BG445700 Rh4CG463000 Rh4DG444400 Rh6AG064400 Rh6AG236900 Rh6AG238600 Rh6BG243300 Rh6DG194000
rosa_wichuraiana	Rw0G020890 Rw1G006200 Rw2G050650 Rw3G023620 Rw4G006200 Rw4G037350 Rw5G014850 Rw5G015450 Rw6G004540 Rw6G020620 Rw6G020840 Rw7G017030 Rw7G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	6 cut(s)	115, 120, 130, 150, 207, 289
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	3 cut(s)	34, 139, 368
AluI	AGCT	3 cut(s)	34, 139, 368
AsuHPI	GGTGA	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	236
BccI	CCATC	2 cut(s)	19, 394
BfmI	CTRYAG	1 cut(s)	408
BlpI	GCTNAGC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	238, 405
BmsI	GCATC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	4 cut(s)	119, 252, 290, 350
BsaHI	GRCGYC	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse118I	RCCGGY	1 cut(s)	239
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	26
BseRI	GAGGAG	2 cut(s)	136, 293
BseYI	CCCAGC	1 cut(s)	368
Bsh1285I	CGRYCG	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	73, 294
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	6 cut(s)	115, 120, 130, 150, 207, 289
BspCNI	CTCAG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	238, 405
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssMI	GATC	2 cut(s)	73, 294
BssNI	GRCGYC	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	35, 342
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	76, 297
BstMBI	GATC	2 cut(s)	73, 294
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	239
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	6 cut(s)	34, 139, 243, 272, 368, 404
CviKI_1	RGCY	6 cut(s)	34, 139, 243, 272, 368, 404
DdeI	CTNAG	2 cut(s)	35, 342
DpnI	GATC	2 cut(s)	75, 296
DpnII	GATC	2 cut(s)	73, 294
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	413
FaeI	CATG	1 cut(s)	265
FaiI	YATR	2 cut(s)	263, 356
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	1 cut(s)	261
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	1 cut(s)	228
FokI	GGATG	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	98
HapII	CCGG	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	173, 361
Hpy188III	TCNNGA	2 cut(s)	77, 253
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	3 cut(s)	230, 233, 236
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4IV	ACGT	2 cut(s)	219, 231
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	35, 342
HpySE526I	ACGT	2 cut(s)	219, 231
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	73, 294
LmnI	GCTCC	2 cut(s)	43, 409
LpnPI	CCDG	4 cut(s)	62, 165, 253, 354
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	2 cut(s)	219, 231
MalI	GATC	2 cut(s)	75, 296
MboI	GATC	2 cut(s)	73, 294
MboII	GAAGA	4 cut(s)	32, 80, 268, 358
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	196
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	2 cut(s)	73, 294
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	2 cut(s)	238, 405
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	238, 405
SalI	GTCGAC	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	73, 294
SchI	GAGTC	1 cut(s)	92
SetI	ASST	9 cut(s)	36, 84, 141, 146, 165, 222, 234, 336, 370
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	318
SgrDI	CGTCGACG	1 cut(s)	227
SmlI	CTYRAG	4 cut(s)	134, 267, 305, 329
SmoI	CTYRAG	4 cut(s)	134, 267, 305, 329
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	6 cut(s)	115, 120, 130, 150, 207, 289
TaaI	ACNGT	1 cut(s)	417
TaiI	ACGT	2 cut(s)	222, 234
TaqI	TCGA	3 cut(s)	228, 252, 318
TasI	AATT	1 cut(s)	313
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	238, 378
TspRI	CASTG	1 cut(s)	63
XceI	RCATGY	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	228
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.