AT5G32440

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003445
Physical Location & Seq
Forward (+)
12076717 .. 12078603
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G32440.3

Sequence Viewer

Length: 795 bp
ATGTCTGCGATTGTTTGCGGGAAGAGATCTCTGTTCGAGGACTTAGCCGCCGCTTCTCCTCCCGTCTCCAAGAAACTCCGTTGCTTTTCTTCATCTTCTTCGTCTCGTTTTTCTCCTCCGATTCCTCCTTCTTCCTCACTTCTTCTCGATCACCTCGCCGCGATTTTCCCCGATATGGATAAGCAGATTCTTGAGAGGGCAATCGAGGAATGTGGAGATGACCTTGATTCAGCCATTAGATGTTTGAATCAGCTTCGTTTAGAATCTGCCAATAAGAATTCTGATTCTGCTACAAACCAATCTCCTGTTGTAATCCAGGAACCAAATGTTGAACCTCAACAGCAAGGATCAGCCAAGGAGGAACCAAATGTCTTGAACTTGGATGGTACAGAGTGGGTTGAGCTTTTTGTTAGGGAAATGATGAATGCTTCTGACATGAAAGACGCCAAAGCCCGTGCTGCAAGAGCATTGGAAGCTTTGGAGAAGTCAATTAATGCACGTACTGGTACTGACGCAATGCAAAATCTCCAACAGGAAAACATGATGCTGAAGCAGCAATTAGAAGCTATTGTACAGGAAAACAGTTTACTGAAACGAGCGGTAGTGACACAGCAGAAGCGGCAAAGAGAATCGGAAGACCAAAGTCAGGAATTGCAGCATCTGAGGCAGCTAGTCACTCAATACCAGGAACAGTTGAGAACTTTAGAGGTGAATAACTATGCTCTGACGCTTCATCTGAAACAAGCTCAGCAAAACAGTTCCATCCCGGGGCGGTACCATCCAGACGTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

264

Amino Acids

29.63

Weight (kDa)

5.27

Isoelectric Point (pI)

65.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 789
Acc65I GGTACC 1 cut(s) 774
AccB1I GGYRCC 1 cut(s) 774
AccBSI CCGCTC 1 cut(s) 599
AccII CGCG 1 cut(s) 161
AciI CCGC 7 cut(s) 18, 48, 51, 159, 599, 619, 772
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 569
AcyI GRCGYC 2 cut(s) 444, 786
AfaI GTAC 5 cut(s) 388, 502, 508, 573, 776
AfiI CCNNNNNNNGG 3 cut(s) 175, 646, 768
AgsI TTSAA 3 cut(s) 247, 332, 376
AjnI CCWGG 2 cut(s) 315, 684
AluBI AGCT 6 cut(s) 253, 403, 476, 566, 670, 746
AluI AGCT 6 cut(s) 253, 403, 476, 566, 670, 746
Alw26I GTCTC 2 cut(s) 70, 108
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 766
ApeKI GCWGC 4 cut(s) 458, 553, 655, 667
ApoI RAATTY 1 cut(s) 277
AseI ATTAAT 1 cut(s) 492
Asp718I GGTACC 1 cut(s) 774
AsuC2I CCSGG 2 cut(s) 767, 768
AsuHPI GGTGA 2 cut(s) 143, 721
AvaI CYCGRG 1 cut(s) 766
BanI GGYRCC 1 cut(s) 774
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
BbsI GAAGAC 2 cut(s) 642, 781
BbvI GCAGC 4 cut(s) 445, 565, 667, 679
BccI CCATC 3 cut(s) 377, 770, 786
BciT130I CCWGG 2 cut(s) 317, 686
BcnI CCSGG 2 cut(s) 767, 768
BcoDI GTCTC 2 cut(s) 70, 108
BfaI CTAG 1 cut(s) 671
BglII AGATCT 1 cut(s) 26
BisI GCNGC 8 cut(s) 48, 51, 159, 459, 554, 620, 656, 668
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 8 cut(s) 49, 52, 160, 460, 555, 621, 657, 669
Bme1390I CCNGG 4 cut(s) 317, 686, 767, 768
BmeT110I CYCGRG 1 cut(s) 766
BmiI GGNNCC 3 cut(s) 321, 363, 776
BmrFI CCNGG 4 cut(s) 317, 686, 767, 768
BmsI GCATC 2 cut(s) 534, 667
BoxI GACNNNNGTC 1 cut(s) 642
BpiI GAAGAC 2 cut(s) 642, 781
Bpu1102I GCTNAGC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 767, 768
BsaAI YACGTR 1 cut(s) 500
BsaHI GRCGYC 2 cut(s) 444, 786
BsaJI CCNNGG 3 cut(s) 354, 766, 767
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 646, 768
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 2 cut(s) 317, 686
BseDI CCNNGG 3 cut(s) 354, 766, 767
BseGI GGATG 3 cut(s) 388, 762, 778
BseLI CCNNNNNNNGG 3 cut(s) 175, 646, 768
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 2 cut(s) 653, 761
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 2 cut(s) 48, 105
BseXI GCAGC 4 cut(s) 445, 565, 667, 679
Bsh1236I CGCG 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 774
BsiHKCI CYCGRG 1 cut(s) 766
BsiSI CCGG 1 cut(s) 767
BslI CCNNNNNNNGG 3 cut(s) 175, 646, 768
BsmAI GTCTC 2 cut(s) 70, 108
BsmBI CGTCTC 2 cut(s) 70, 108
BsmI GAATGC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 766
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 3 cut(s) 26, 148, 347
Bsp1720I GCTNAGC 1 cut(s) 747
BspACI CCGC 7 cut(s) 18, 48, 51, 159, 599, 619, 772
BspCNI CTCAG 2 cut(s) 654, 760
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 3 cut(s) 321, 363, 776
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 774
BsrBI CCGCTC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 3 cut(s) 354, 766, 767
BssMI GATC 3 cut(s) 26, 148, 347
BssNI GRCGYC 2 cut(s) 444, 786
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 317, 686
Bst4CI ACNGT 3 cut(s) 584, 693, 758
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 2 cut(s) 444, 786
BstAUI TGTACA 1 cut(s) 571
BstBAI YACGTR 1 cut(s) 500
BstDEI CTNAG 3 cut(s) 43, 662, 747
BstF5I GGATG 3 cut(s) 388, 762, 778
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 3 cut(s) 29, 151, 350
BstMAI GTCTC 2 cut(s) 70, 108
BstMBI GATC 3 cut(s) 26, 148, 347
BstMWI GCNNNNNNNGC 6 cut(s) 458, 464, 473, 553, 619, 664
BstNI CCWGG 2 cut(s) 317, 686
BstPAI GACNNNNGTC 1 cut(s) 642
BstSCI CCNGG 4 cut(s) 315, 684, 765, 766
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 4 cut(s) 445, 565, 667, 679
BstV2I GAAGAC 2 cut(s) 642, 781
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BtsCI GGATG 3 cut(s) 388, 762, 778
CaiI CAGNNNCTG 1 cut(s) 661
Cfr9I CCCGGG 1 cut(s) 766
CseI GACGC 3 cut(s) 452, 521, 736
Csp6I GTAC 5 cut(s) 387, 501, 507, 572, 775
CviAII CATG 2 cut(s) 436, 541
CviQI GTAC 5 cut(s) 387, 501, 507, 572, 775
DdeI CTNAG 3 cut(s) 43, 662, 747
DpnI GATC 3 cut(s) 28, 150, 349
DpnII GATC 3 cut(s) 26, 148, 347
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 766
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 315, 684
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
Esp3I CGTCTC 2 cut(s) 70, 108
FaeI CATG 2 cut(s) 439, 544
FaiI YATR 4 cut(s) 176, 437, 542, 720
FatI CATG 2 cut(s) 435, 540
FauI CCCGC 1 cut(s) 11
Fnu4HI GCNGC 8 cut(s) 48, 51, 159, 459, 554, 620, 656, 668
FokI GGATG 3 cut(s) 395, 749, 765
Fsp4HI GCNGC 8 cut(s) 48, 51, 159, 459, 554, 620, 656, 668
FspBI CTAG 1 cut(s) 671
GluI GCNGC 8 cut(s) 48, 51, 159, 459, 554, 620, 656, 668
HapII CCGG 1 cut(s) 767
HgaI GACGC 3 cut(s) 452, 521, 736
Hin1I GRCGYC 2 cut(s) 444, 786
Hin1II CATG 2 cut(s) 439, 544
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 7 cut(s) 121, 187, 227, 247, 263, 284, 629
HpaII CCGG 1 cut(s) 767
HphI GGTGA 2 cut(s) 143, 721
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 7 cut(s) 120, 283, 433, 634, 663, 726, 738
Hpy188III TCNNGA 5 cut(s) 146, 191, 373, 647, 782
Hpy8I GTNNAC 1 cut(s) 587
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 3 cut(s) 584, 693, 758
HpyCH4IV ACGT 2 cut(s) 499, 786
HpyCH4V TGCA 4 cut(s) 461, 497, 520, 655
HpyF10VI GCNNNNNNNGC 6 cut(s) 458, 464, 473, 553, 619, 664
HpyF3I CTNAG 3 cut(s) 43, 662, 747
HpySE526I ACGT 2 cut(s) 499, 786
Hsp92I GRCGYC 2 cut(s) 444, 786
Hsp92II CATG 2 cut(s) 439, 544
KpnI GGTACC 1 cut(s) 778
Kzo9I GATC 3 cut(s) 26, 148, 347
Lsp1109I GCAGC 4 cut(s) 445, 565, 667, 679
LweI GCATC 2 cut(s) 534, 667
MaeI CTAG 1 cut(s) 671
MaeII ACGT 2 cut(s) 499, 786
MaeIII GTNAC 2 cut(s) 604, 673
MalI GATC 3 cut(s) 28, 150, 349
MbiI CCGCTC 1 cut(s) 599
MboI GATC 3 cut(s) 26, 148, 347
MboII GAAGA 8 cut(s) 34, 81, 87, 90, 123, 134, 647, 781
MflI RGATCY 1 cut(s) 26
MluCI AATT 4 cut(s) 277, 489, 557, 650
MmeI TCCRAC 1 cut(s) 553
MseI TTAA 1 cut(s) 492
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 4 cut(s) 317, 686, 767, 768
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 317, 686
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 6 cut(s) 458, 464, 473, 553, 619, 664
NciI CCSGG 2 cut(s) 767, 768
NdeII GATC 3 cut(s) 26, 148, 347
NlaIII CATG 2 cut(s) 439, 544
NlaIV GGNNCC 3 cut(s) 321, 363, 776
NmuCI GTSAC 2 cut(s) 604, 673
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 7 cut(s) 121, 187, 227, 247, 263, 284, 629
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 8 cut(s) 49, 52, 160, 460, 555, 621, 657, 669
Ppu21I YACGTR 1 cut(s) 500
PshAI GACNNNNGTC 1 cut(s) 642
PshBI ATTAAT 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 315, 684
PspGI CCWGG 2 cut(s) 315, 684
PspN4I GGNNCC 3 cut(s) 321, 363, 776
PstNI CAGNNNCTG 1 cut(s) 661
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 5 cut(s) 388, 502, 508, 573, 776
RsaNI GTAC 5 cut(s) 387, 501, 507, 572, 775
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 8 cut(s) 48, 51, 159, 459, 554, 620, 656, 668
Sau3AI GATC 3 cut(s) 26, 148, 347
ScrFI CCNGG 4 cut(s) 317, 686, 767, 768
SfaNI GCATC 2 cut(s) 534, 667
SmaI CCCGGG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 277, 489, 557, 650
SsiI CCGC 7 cut(s) 18, 48, 51, 159, 599, 619, 772
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 4 cut(s) 315, 684, 765, 766
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 584, 693, 758
TaiI ACGT 2 cut(s) 502, 789
TaqI TCGA 3 cut(s) 36, 147, 204
TasI AATT 4 cut(s) 277, 489, 557, 650
TatI WGTACW 1 cut(s) 571
TauI GCSGC 4 cut(s) 50, 53, 161, 622
TfiI GAWTC 7 cut(s) 121, 187, 227, 247, 263, 284, 629
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TseFI GTSAC 2 cut(s) 604, 673
TseI GCWGC 4 cut(s) 458, 553, 655, 667
Tsp45I GTSAC 2 cut(s) 604, 673
TspDTI ATGAA 4 cut(s) 81, 437, 452, 722
TspGWI ACGGA 1 cut(s) 68
TspMI CCCGGG 1 cut(s) 766
VspI ATTAAT 1 cut(s) 492
XapI RAATTY 1 cut(s) 277
XmaI CCCGGG 1 cut(s) 766
XspI CTAG 1 cut(s) 671
ZraI GACGTC 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.