Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003445

Physical Location & Seq

Genomic Coordinates Reverse (-)

12945550 .. 12948067

Gene Structure 2518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1168400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTCTGCCATCGTGTGCGGGAAGAGATCATCGATTTTCGGAGACAACTCGCTGCCGTCGACTTCCCCTCCCGTCTCCTCCGCTTCCAAGAGAATCCGCTGCTCCTCTTCTTCCTCCCCGGTTCGCTTCTCTCCTCCCTCCACGAGGTCGTTTTCTGCATCGCATTTGATCGAACACCTCAGGGCCGTTTTCCCAGGCATGGACAACCAGCTTCTAGAGAGAGCACTTGAAGAATGTGGTGATGATTTGGATTCGGCTATCAGAAGTTTGAATGAGCTACGTTTAGGTTCTGCTGCAGGACAATCTGATATAGCTTCAGAAGCAAATGTGCAACTCCAATCACAGGGTGCGGTATCAACAAATGGAGAGATTGCAGTTACTGATGATCCATCAGTGCAAAATAACCTTCCCACGGATGGAGCAGAGTGGGTGGAGCTCGTTGTGAGAGAGATGATGAGTGCCTCTAACATGAATGATGCTAAAGCTCGTGCCTCAAGAGTGCTTGAGGCTTTGGAGAAGTCTATTAGTGAGCGTGCAACCGCAGAGGTAGCCCAAAGCTTTTGCCATGAAAATATGATGCTGAAGGAACAATTGGAAGCTATTATTCAGGAAAATACAATTTTAAAGCGAGCTGTATCCACTCAGCATGAACAGCAGAAGGAGTTTGAAGATAGAGGCCAGGAATTGCAGCATCTGAAGCAACTGGTGGCCCAGTACCAGGAACAGTTGAGAACCCTCGAGGAAGTTTGGGAGAGCATAGCGTTGTTTGCTTTATACAGCGCATTACATGATCTCCTTGCTAGTCTGTTACCGTTCCTTTTGAAGTTGGTTTTTCTTCGTCGTGGTCTTTGCTTGCTTAAGTTTCCCAAAGTCTCAGTGAACAACTATGCACTTACAATGCACCTCAAGCAGGCACAGCAAAGTAGCACCATTCCAGCTCGTTTTCATCCGGATGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

321

Amino Acids

35.4

Weight (kDa)

5.56

Isoelectric Point (pI)

61.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32440 AT5G32440 AT5G32440
fragaria_vesca	FvH4_1g02660 FvH4_6g29540
malus_domestica	MD02G1026900.v1.1 MD10G1231400.v1.1 MD15G1168400.v1.1 MD17G1213400.v1.1
prunus_persica	Prupe.3G088700_v2.0.a1 Prupe.7G248100_v2.0.a1
pyrus_communis	pycom02g02200 pycom15g15020 pycom17g21830
rosa_chinensis	RchiOBHm_Chr2g0087691 RchiOBHm_Chr2g0135081
rosa_laevigata	RLG00000015893 RLG00000019440
rosa_multiflora	Rmu_sc0000811.1_g000024 Rmu_sc0001385.1_g000013 Rmu_sc0003543.1_g000002 Rmu_sc0025266.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109500 Rroxscaffold_2G00153280
rosa_rugosa	Rorug01G0478500 Rorug02G0322700
rosa_samantha	Rh2AG032400 Rh2AG372000 Rh2BG031500 Rh2BG379500 Rh2CG031900 Rh2CG358600 Rh2DG031900 Rh2DG396100
rosa_wichuraiana	Rw0G013550 Rw2G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	737
AccI	GTMKAC	1 cut(s)	59
AccIII	TCCGGA	1 cut(s)	949
AciI	CCGC	5 cut(s)	18, 81, 97, 350, 540
AclWI	GGATC	1 cut(s)	380
AcuI	CTGAAG	3 cut(s)	300, 602, 716
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	7 cut(s)	144, 199, 343, 412, 416, 718, 910
AflII	CTTAAG	1 cut(s)	857
AgsI	TTSAA	4 cut(s)	230, 271, 668, 823
AjnI	CCWGG	3 cut(s)	193, 678, 717
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	9 cut(s)	211, 277, 314, 436, 485, 558, 599, 632, 938
AluI	AGCT	9 cut(s)	211, 277, 314, 436, 485, 558, 599, 632, 938
Alw21I	GWGCWC	2 cut(s)	226, 438
Alw26I	GTCTC	3 cut(s)	36, 79, 877
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	2 cut(s)	380, 694
Ama87I	CYCGRG	1 cut(s)	737
Aor13HI	TCCGGA	1 cut(s)	949
AoxI	GGCC	3 cut(s)	183, 676, 708
ApeKI	GCWGC	4 cut(s)	52, 99, 293, 688
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	2 cut(s)	183, 709
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	737
AxyI	CCTNAGG	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	2 cut(s)	142, 486
Bbv12I	GWGCWC	2 cut(s)	226, 438
BbvI	GCAGC	4 cut(s)	39, 86, 280, 700
BccI	CCATC	3 cut(s)	17, 397, 410
BceAI	ACGGC	2 cut(s)	40, 170
BciT130I	CCWGG	3 cut(s)	195, 680, 719
BciVI	GTATCC	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	36, 79, 877
BfaI	CTAG	2 cut(s)	215, 801
BfmI	CTRYAG	1 cut(s)	294
BfrI	CTTAAG	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	646
BisI	GCNGC	4 cut(s)	53, 100, 294, 689
BlsI	GCNGC	4 cut(s)	54, 101, 295, 690
Bme1390I	CCNGG	4 cut(s)	119, 195, 680, 719
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	183, 709
BmrFI	CCNGG	4 cut(s)	119, 195, 680, 719
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	4 cut(s)	167, 466, 567, 700
BmuI	ACTGGG	1 cut(s)	706
BpuEI	CTTGAG	3 cut(s)	478, 524, 890
BpuMI	CCSGG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	117, 193, 411
BsaWI	WCCGGW	1 cut(s)	949
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 777, 807
Bsc4I	CCNNNNNNNGG	7 cut(s)	144, 199, 343, 412, 416, 718, 910
Bse1I	ACTGG	2 cut(s)	708, 712
Bse21I	CCTNAGG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	949
BseBI	CCWGG	3 cut(s)	195, 680, 719
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	117, 193, 411
BseGI	GGATG	3 cut(s)	421, 946, 958
BseLI	CCNNNNNNNGG	7 cut(s)	144, 199, 343, 412, 416, 718, 910
BseMII	CTCAG	3 cut(s)	193, 656, 888
BseNI	ACTGG	2 cut(s)	708, 712
BseRI	GAGGAG	3 cut(s)	67, 94, 123
BseXI	GCAGC	4 cut(s)	39, 86, 280, 700
BshFI	GGCC	3 cut(s)	185, 678, 710
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	226, 438
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	2 cut(s)	119, 950
BslI	CCNNNNNNNGG	7 cut(s)	144, 199, 343, 412, 416, 718, 910
BsmAI	GTCTC	3 cut(s)	36, 79, 877
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	185, 678, 710
BsoBI	CYCGRG	1 cut(s)	737
Bsp1286I	GDGCHC	2 cut(s)	226, 438
Bsp13I	TCCGGA	1 cut(s)	949
Bsp143I	GATC	4 cut(s)	26, 168, 385, 790
BspACI	CCGC	5 cut(s)	18, 81, 97, 350, 540
BspANI	GGCC	3 cut(s)	185, 678, 710
BspCNI	CTCAG	3 cut(s)	192, 655, 887
BspDI	ATCGAT	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	949
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	857
BsrI	ACTGG	2 cut(s)	708, 712
BssECI	CCNNGG	3 cut(s)	117, 193, 411
BssMI	GATC	4 cut(s)	26, 168, 385, 790
BssSI	CACGAG	2 cut(s)	142, 486
Bst2BI	CACGAG	2 cut(s)	142, 486
Bst2UI	CCWGG	3 cut(s)	195, 680, 719
Bst4CI	ACNGT	2 cut(s)	726, 813
Bst6I	CTCTTC	2 cut(s)	17, 112
BstAFI	CTTAAG	1 cut(s)	857
BstC8I	GCNNGC	4 cut(s)	534, 630, 854, 912
BstDEI	CTNAG	3 cut(s)	179, 642, 874
BstDSI	CCRYGG	1 cut(s)	411
BstENI	CCTNNNNNAGG	2 cut(s)	142, 908
BstF5I	GGATG	3 cut(s)	421, 946, 958
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	4 cut(s)	29, 171, 388, 793
BstMAI	GTCTC	3 cut(s)	36, 79, 877
BstMBI	GATC	4 cut(s)	26, 168, 385, 790
BstMWI	GCNNNNNNNGC	7 cut(s)	320, 548, 652, 697, 767, 907, 916
BstNI	CCWGG	3 cut(s)	195, 680, 719
BstSCI	CCNGG	4 cut(s)	117, 193, 678, 717
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	4 cut(s)	39, 86, 280, 700
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	185, 678, 710
BsuTUI	ATCGAT	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	421, 946, 958
BtsIMutI	CAGTG	2 cut(s)	399, 882
Cac8I	GCNNGC	4 cut(s)	534, 630, 854, 912
CaiI	CAGNNNCTG	2 cut(s)	380, 694
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	2 cut(s)	183, 709
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	5 cut(s)	199, 469, 566, 647, 788
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	3 cut(s)	179, 642, 874
DpnI	GATC	4 cut(s)	28, 170, 387, 792
DpnII	GATC	4 cut(s)	26, 168, 385, 790
DraI	TTTAAA	1 cut(s)	624
DraIII	CACNNNGTG	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	17, 112
EarI	CTCTTC	2 cut(s)	17, 112
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	3 cut(s)	300, 602, 716
Eco81I	CCTNAGG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	737
EcoICRI	GAGCTC	1 cut(s)	436
EcoNI	CCTNNNNNAGG	2 cut(s)	142, 908
EcoRII	CCWGG	3 cut(s)	193, 678, 717
EcoT38I	GRGCYC	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	5 cut(s)	202, 472, 569, 650, 791
FatI	CATG	5 cut(s)	198, 468, 565, 646, 787
FauI	CCCGC	1 cut(s)	11
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	4 cut(s)	53, 100, 294, 689
FokI	GGATG	2 cut(s)	428, 933
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	4 cut(s)	53, 100, 294, 689
FspBI	CTAG	2 cut(s)	215, 801
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	4 cut(s)	53, 100, 294, 689
HaeIII	GGCC	3 cut(s)	185, 678, 710
HapII	CCGG	2 cut(s)	119, 950
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	5 cut(s)	202, 472, 569, 650, 791
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	2 cut(s)	93, 251
HpaII	CCGG	2 cut(s)	119, 950
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	60, 880
Hpy188I	TCNGA	5 cut(s)	41, 263, 307, 319, 696
Hpy188III	TCNNGA	4 cut(s)	215, 495, 608, 950
Hpy8I	GTNNAC	2 cut(s)	60, 880
Hpy99I	CGWCG	2 cut(s)	61, 843
HpyAV	CCTTC	3 cut(s)	416, 577, 652
HpyCH4III	ACNGT	2 cut(s)	726, 813
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	9 cut(s)	158, 296, 331, 374, 397, 536, 688, 890, 901
HpyF10VI	GCNNNNNNNGC	7 cut(s)	320, 548, 652, 697, 767, 907, 916
HpyF3I	CTNAG	3 cut(s)	179, 642, 874
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	5 cut(s)	202, 472, 569, 650, 791
HspAI	GCGC	1 cut(s)	780
Kpn2I	TCCGGA	1 cut(s)	949
Kzo9I	GATC	4 cut(s)	26, 168, 385, 790
LmnI	GCTCC	3 cut(s)	107, 419, 433
Lsp1109I	GCAGC	4 cut(s)	39, 86, 280, 700
LweI	GCATC	4 cut(s)	167, 466, 567, 700
MaeI	CTAG	2 cut(s)	215, 801
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	376, 807
MalI	GATC	4 cut(s)	28, 170, 387, 792
MboI	GATC	4 cut(s)	26, 168, 385, 790
MboII	GAAGA	6 cut(s)	34, 99, 102, 242, 680, 827
MfeI	CAATTG	1 cut(s)	590
MhlI	GDGCHC	2 cut(s)	226, 438
MluCI	AATT	3 cut(s)	590, 618, 683
MroI	TCCGGA	1 cut(s)	949
MseI	TTAA	2 cut(s)	623, 858
MslI	CAYNNNNRTG	1 cut(s)	951
MspA1I	CMGCKG	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	2 cut(s)	119, 950
MspR9I	CCNGG	4 cut(s)	119, 195, 680, 719
MunI	CAATTG	1 cut(s)	590
MvaI	CCWGG	3 cut(s)	195, 680, 719
MwoI	GCNNNNNNNGC	7 cut(s)	320, 548, 652, 697, 767, 907, 916
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	26, 168, 385, 790
NlaIII	CATG	5 cut(s)	202, 472, 569, 650, 791
PaeR7I	CTCGAG	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	93, 251
PkrI	GCNGC	4 cut(s)	54, 101, 295, 690
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	3 cut(s)	193, 678, 717
PspGI	CCWGG	3 cut(s)	193, 678, 717
PspPI	GGNCC	2 cut(s)	183, 709
PspXI	VCTCGAGB	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	2 cut(s)	380, 694
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	951
SacI	GAGCTC	1 cut(s)	438
SalI	GTCGAC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	623, 858
SatI	GCNGC	4 cut(s)	53, 100, 294, 689
Sau3AI	GATC	4 cut(s)	26, 168, 385, 790
Sau96I	GGNCC	2 cut(s)	183, 709
ScrFI	CCNGG	4 cut(s)	119, 195, 680, 719
SduI	GDGCHC	2 cut(s)	226, 438
SfaNI	GCATC	4 cut(s)	167, 466, 567, 700
SfcI	CTRYAG	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	737
SlaI	CTCGAG	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	951
SmlI	CTYRAG	5 cut(s)	493, 503, 737, 857, 905
SmoI	CTYRAG	5 cut(s)	493, 503, 737, 857, 905
Sse9I	AATT	3 cut(s)	590, 618, 683
SsiI	CCGC	5 cut(s)	18, 81, 97, 350, 540
SspMI	CTAG	2 cut(s)	215, 801
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	4 cut(s)	117, 193, 678, 717
TaaI	ACNGT	2 cut(s)	726, 813
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	4 cut(s)	32, 59, 171, 738
TasI	AATT	3 cut(s)	590, 618, 683
TfiI	GAWTC	2 cut(s)	93, 251
Tru1I	TTAA	2 cut(s)	623, 858
Tru9I	TTAA	2 cut(s)	623, 858
TscAI	CASTG	2 cut(s)	399, 882
TseI	GCWGC	4 cut(s)	52, 99, 293, 688
TspDTI	ATGAA	4 cut(s)	485, 582, 663, 935
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	399, 882
Vha464I	CTTAAG	1 cut(s)	857
XagI	CCTNNNNNAGG	2 cut(s)	142, 908
XbaI	TCTAGA	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	2 cut(s)	215, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.