Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003445

Physical Location & Seq

Genomic Coordinates Forward (+)

21059535 .. 21062692

Gene Structure 3158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCTGCCATAGTGTGCGGGAAGAGATCATCGATATTCGAAGAGAACTCGCTGCCCTCATCGTCCCCTCCTGTCTCCTCCTCATCCAAGAGAATCCGCTTTTCTTCTTCACCTGTACGTTTCTCTCCTCCGACTCCCGCTCGGACGTCGTTTGCTTCGCATTTGATCGACCATCTCAGGTCCATTTTCCCGGACATGGACAACCAGCTTCTGGAGAGAGCACTTGAAGAATGTGGTGATGATTTGGATTCAGCTATCAGAAGTTTGAATGAGCTACGTTTAAGTTCTGCTGCAGGCAAATCTAATGTAGCTTCAGAAGCAAATGTGCAACTCCAGTCACAAGGTTCAGCTGCAACAAATGGAGAGGTTGCAGTTACTGATGATCCATCAGGGCTAAATAACCTTCCCAAGGATGGAGCGGACTGGGTGGAGCTTGTTGTTAGAGAGATGATGAGTGCCTCCAACATGGATGATGCTAAAGCTCGTGCTTCAAGAGTGCTTGAGGCCCTGGAGAAATCCATCAGTGGACGTGCAACAGCAGAGGCAGCCCAAAGCTTTCACCAGGAAAATATGATGCTGAAGGAACAATTGGAAGTTCTAATTCAGGAAAACACAATTTTAAAGCGAGCTGTATCCACTCAGCATGAACGCCAGAAAGAGTACGAAGATAGAGGCCAGGAATTGCAGCATCTGAAGCAACTGGTGGCCCAATACCAGGAACAGTTGAGAACCCTCGAGGTGAACAACTATGCACTAACAATGCACCTGAAGCAGGCTCAGCAAAGCAGCTCCATCCCAGGGCGTTTTCATCCGGATGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

275

Amino Acids

30.3

Weight (kDa)

5.45

Isoelectric Point (pI)

61.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32440 AT5G32440 AT5G32440
fragaria_vesca	FvH4_1g02660 FvH4_6g29540
malus_domestica	MD02G1026900.v1.1 MD10G1231400.v1.1 MD15G1168400.v1.1 MD17G1213400.v1.1
prunus_persica	Prupe.3G088700_v2.0.a1 Prupe.7G248100_v2.0.a1
pyrus_communis	pycom02g02200 pycom15g15020 pycom17g21830
rosa_chinensis	RchiOBHm_Chr2g0087691 RchiOBHm_Chr2g0135081
rosa_laevigata	RLG00000015893 RLG00000019440
rosa_multiflora	Rmu_sc0000811.1_g000024 Rmu_sc0001385.1_g000013 Rmu_sc0003543.1_g000002 Rmu_sc0025266.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109500 Rroxscaffold_2G00153280
rosa_rugosa	Rorug01G0478500 Rorug02G0322700
rosa_samantha	Rh2AG032400 Rh2AG372000 Rh2BG031500 Rh2BG379500 Rh2CG031900 Rh2CG358600 Rh2DG031900 Rh2DG396100
rosa_wichuraiana	Rw0G013550 Rw2G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	149
AbsI	CCTCGAGG	1 cut(s)	734
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccBSI	CCGCTC	2 cut(s)	140, 419
AccIII	TCCGGA	1 cut(s)	811
AciI	CCGC	4 cut(s)	18, 97, 138, 419
AclWI	GGATC	1 cut(s)	377
AcuI	CTGAAG	4 cut(s)	297, 599, 713, 788
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	117, 662
AfiI	CCNNNNNNNGG	7 cut(s)	196, 211, 409, 413, 715, 772, 798
AgsI	TTSAA	3 cut(s)	227, 268, 492
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	5 cut(s)	507, 561, 675, 714, 796
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	3 cut(s)	211, 377, 691
Ama87I	CYCGRG	1 cut(s)	734
Aor13HI	TCCGGA	1 cut(s)	811
AoxI	GGCC	3 cut(s)	504, 673, 705
ApeKI	GCWGC	6 cut(s)	52, 290, 350, 545, 685, 786
AspS9I	GGNCC	3 cut(s)	180, 505, 706
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	4 cut(s)	102, 248, 551, 751
AsuII	TTCGAA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	6 cut(s)	39, 277, 337, 557, 697, 798
BccI	CCATC	5 cut(s)	180, 394, 407, 527, 800
BciT130I	CCWGG	5 cut(s)	509, 563, 677, 716, 798
BciVI	GTATCC	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	643
BisI	GCNGC	6 cut(s)	53, 291, 351, 546, 686, 787
BlpI	GCTNAGC	1 cut(s)	777
BlsI	GCNGC	6 cut(s)	54, 292, 352, 547, 687, 788
Bme1390I	CCNGG	6 cut(s)	191, 509, 563, 677, 716, 798
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	734
BmgBI	CACGTC	1 cut(s)	530
BmgT120I	GGNCC	3 cut(s)	180, 505, 706
BmrFI	CCNGG	6 cut(s)	191, 509, 563, 677, 716, 798
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	3 cut(s)	463, 564, 697
BmuI	ACTGGG	1 cut(s)	433
BpmI	CTGGAG	3 cut(s)	233, 317, 530
Bpu1102I	GCTNAGC	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	408, 507, 796, 797
BsaWI	WCCGGW	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	7 cut(s)	196, 211, 409, 413, 715, 772, 798
Bse1I	ACTGG	3 cut(s)	334, 428, 705
BseAI	TCCGGA	1 cut(s)	811
BseBI	CCWGG	5 cut(s)	509, 563, 677, 716, 798
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	408, 507, 796, 797
BseGI	GGATG	6 cut(s)	83, 418, 475, 792, 808, 820
BseLI	CCNNNNNNNGG	7 cut(s)	196, 211, 409, 413, 715, 772, 798
BseMII	CTCAG	3 cut(s)	190, 653, 791
BseNI	ACTGG	3 cut(s)	334, 428, 705
BseRI	GAGGAG	3 cut(s)	67, 70, 117
BseXI	GCAGC	6 cut(s)	39, 277, 337, 557, 697, 798
BshFI	GGCC	3 cut(s)	506, 675, 707
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	191, 812
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	7 cut(s)	196, 211, 409, 413, 715, 772, 798
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	506, 675, 707
BsoBI	CYCGRG	1 cut(s)	734
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	811
Bsp143I	GATC	3 cut(s)	26, 165, 382
Bsp1720I	GCTNAGC	1 cut(s)	777
BspACI	CCGC	4 cut(s)	18, 97, 138, 419
BspANI	GGCC	3 cut(s)	506, 675, 707
BspCNI	CTCAG	3 cut(s)	189, 652, 790
BspDI	ATCGAT	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	811
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	39
BsrBI	CCGCTC	2 cut(s)	140, 419
BsrI	ACTGG	3 cut(s)	334, 428, 705
BssECI	CCNNGG	4 cut(s)	408, 507, 796, 797
BssMI	GATC	3 cut(s)	26, 165, 382
BssNI	GRCGYC	1 cut(s)	146
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	5 cut(s)	509, 563, 677, 716, 798
Bst4CI	ACNGT	1 cut(s)	723
Bst6I	CTCTTC	2 cut(s)	17, 36
BstACI	GRCGYC	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	295, 627, 774
BstDEI	CTNAG	3 cut(s)	176, 639, 777
BstENI	CCTNNNNNAGG	2 cut(s)	407, 770
BstF5I	GGATG	6 cut(s)	83, 418, 475, 792, 808, 820
BstKTI	GATC	3 cut(s)	29, 168, 385
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	3 cut(s)	26, 165, 382
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 545, 694, 769, 778
BstNI	CCWGG	5 cut(s)	509, 563, 677, 716, 798
BstSCI	CCNGG	6 cut(s)	189, 507, 561, 675, 714, 796
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	6 cut(s)	39, 277, 337, 557, 697, 798
Bsu15I	ATCGAT	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	3 cut(s)	506, 675, 707
BsuTUI	ATCGAT	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	6 cut(s)	83, 418, 475, 792, 808, 820
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	3 cut(s)	295, 627, 774
CaiI	CAGNNNCTG	3 cut(s)	211, 377, 691
Cfr13I	GGNCC	3 cut(s)	180, 505, 706
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	116, 661
CviAII	CATG	3 cut(s)	196, 466, 644
CviQI	GTAC	2 cut(s)	116, 661
DdeI	CTNAG	3 cut(s)	176, 639, 777
DpnI	GATC	3 cut(s)	28, 167, 384
DpnII	GATC	3 cut(s)	26, 165, 382
DraI	TTTAAA	1 cut(s)	621
Eam1104I	CTCTTC	2 cut(s)	17, 36
EarI	CTCTTC	2 cut(s)	17, 36
Eco130I	CCWWGG	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	4 cut(s)	297, 599, 713, 788
Eco88I	CYCGRG	1 cut(s)	734
EcoNI	CCTNNNNNAGG	2 cut(s)	407, 770
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRII	CCWGG	5 cut(s)	507, 561, 675, 714, 796
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	3 cut(s)	199, 469, 647
FaiI	YATR	6 cut(s)	11, 197, 467, 572, 645, 750
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	3 cut(s)	195, 465, 643
FauI	CCCGC	2 cut(s)	11, 145
Fnu4HI	GCNGC	6 cut(s)	53, 291, 351, 546, 686, 787
FokI	GGATG	5 cut(s)	70, 425, 482, 779, 795
Fsp4HI	GCNGC	6 cut(s)	53, 291, 351, 546, 686, 787
GluI	GCNGC	6 cut(s)	53, 291, 351, 546, 686, 787
GsuI	CTGGAG	3 cut(s)	233, 317, 530
HaeIII	GGCC	3 cut(s)	506, 675, 707
HapII	CCGG	2 cut(s)	191, 812
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	199, 469, 647
HindIII	AAGCTT	1 cut(s)	553
HinfI	GANTC	3 cut(s)	93, 133, 248
HpaII	CCGG	2 cut(s)	191, 812
HphI	GGTGA	4 cut(s)	102, 248, 551, 751
Hpy166II	GTNNAC	2 cut(s)	527, 742
Hpy188I	TCNGA	5 cut(s)	132, 144, 260, 316, 693
Hpy188III	TCNNGA	4 cut(s)	212, 492, 605, 812
Hpy8I	GTNNAC	2 cut(s)	527, 742
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	413, 574
HpyCH4III	ACNGT	1 cut(s)	723
HpyCH4IV	ACGT	4 cut(s)	118, 146, 277, 529
HpyCH4V	TGCA	8 cut(s)	293, 328, 353, 371, 533, 685, 752, 763
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 545, 694, 769, 778
HpyF3I	CTNAG	3 cut(s)	176, 639, 777
HpySE526I	ACGT	4 cut(s)	118, 146, 277, 529
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	199, 469, 647
Kpn2I	TCCGGA	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	26, 165, 382
LmnI	GCTCC	3 cut(s)	416, 430, 794
Lsp1109I	GCAGC	6 cut(s)	39, 277, 337, 557, 697, 798
LweI	GCATC	3 cut(s)	463, 564, 697
MaeII	ACGT	4 cut(s)	118, 146, 277, 529
MaeIII	GTNAC	2 cut(s)	336, 373
MalI	GATC	3 cut(s)	28, 167, 384
MbiI	CCGCTC	2 cut(s)	140, 419
MboI	GATC	3 cut(s)	26, 165, 382
MboII	GAAGA	6 cut(s)	34, 53, 96, 99, 239, 677
MfeI	CAATTG	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	587, 600, 615, 680
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	155, 486
MroI	TCCGGA	1 cut(s)	811
MseI	TTAA	2 cut(s)	281, 620
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	2 cut(s)	191, 812
MspR9I	CCNGG	6 cut(s)	191, 509, 563, 677, 716, 798
MunI	CAATTG	1 cut(s)	587
MvaI	CCWGG	5 cut(s)	509, 563, 677, 716, 798
MwoI	GCNNNNNNNGC	5 cut(s)	317, 545, 694, 769, 778
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	3 cut(s)	26, 165, 382
NlaIII	CATG	3 cut(s)	199, 469, 647
NmuCI	GTSAC	1 cut(s)	336
NspV	TTCGAA	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	734
PasI	CCCWGGG	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	93, 248
PflMI	CCANNNNNTGG	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	6 cut(s)	54, 292, 352, 547, 687, 788
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	5 cut(s)	507, 561, 675, 714, 796
PspGI	CCWGG	5 cut(s)	507, 561, 675, 714, 796
PspPI	GGNCC	3 cut(s)	180, 505, 706
PspXI	VCTCGAGB	1 cut(s)	734
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	3 cut(s)	211, 377, 691
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	117, 662
RsaNI	GTAC	2 cut(s)	116, 661
RseI	CAYNNNNRTG	1 cut(s)	813
SaqAI	TTAA	2 cut(s)	281, 620
SatI	GCNGC	6 cut(s)	53, 291, 351, 546, 686, 787
Sau3AI	GATC	3 cut(s)	26, 165, 382
Sau96I	GGNCC	3 cut(s)	180, 505, 706
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	6 cut(s)	191, 509, 563, 677, 716, 798
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	3 cut(s)	463, 564, 697
SfcI	CTRYAG	1 cut(s)	291
Sfr274I	CTCGAG	1 cut(s)	734
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	813
SmlI	CTYRAG	2 cut(s)	500, 734
SmoI	CTYRAG	2 cut(s)	500, 734
Sse9I	AATT	4 cut(s)	587, 600, 615, 680
SsiI	CCGC	4 cut(s)	18, 97, 138, 419
StyD4I	CCNGG	6 cut(s)	189, 507, 561, 675, 714, 796
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	723
TaiI	ACGT	4 cut(s)	121, 149, 280, 532
TaqI	TCGA	4 cut(s)	32, 39, 168, 735
TasI	AATT	4 cut(s)	587, 600, 615, 680
TfiI	GAWTC	2 cut(s)	93, 248
Tru1I	TTAA	2 cut(s)	281, 620
Tru9I	TTAA	2 cut(s)	281, 620
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	6 cut(s)	52, 290, 350, 545, 685, 786
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	660, 797
TspRI	CASTG	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	180
XagI	CCTNNNNNAGG	2 cut(s)	407, 770
XhoI	CTCGAG	1 cut(s)	734
ZraI	GACGTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.