Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003445

Physical Location & Seq

Genomic Coordinates Forward (+)

32814945 .. 32815580

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1231400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGACCCTCACGTTCTTGAGAGAGCATTGGAAGAATGTGGTGACGATATTGATGCGGCCATCAAGAGGCTGCATGAGCTTTGCCTAGGATCCGGGGAGGAGACTTCCGCATCTGTTGATCTTGAACAACCAGCTGATACTATAGCTAACGGTGTATTGGCTAATGATGAAGATGCAGCCACTATGGATAATCCATCAGTTGCAAGCAACTTGCCTGCAGATGGTGCGGAATGGGTTGAATTTTTTATAAGGGAAATGATGAGTGCCTTTAGTGTGGATGATGCTAGGTCTCGTGCTGCTAAATTTCTACAGGATTTAGAAAAATCAATCAGTGCACGCGCTGGTGCTGAGGTAGCTAAAAGTTTCGAAAAGGAAAATATGATGATGAAACAACATATTGAAGGACAGGTGTGGGAGAATACTATCCTGAAACGGGCTGTGGCTATCCAGCACGAACGTTTGAAAGAATATGCAGAGAGGAACCGGGAACTCCAGCATGTGAAGCAGCTTGTGTCGCAGTATCAGGAGCAGTGTAGAACACTAGAAGTGAACAACTATGCCTTGACAATGCATCTAAAGCAGGCTGAGCAAAGCAACAACTCCATCCCTGGACATTTGAATCCTCATATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

212

Amino Acids

23.72

Weight (kDa)

4.86

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32440 AT5G32440 AT5G32440
fragaria_vesca	FvH4_1g02660 FvH4_6g29540
malus_domestica	MD02G1026900.v1.1 MD10G1231400.v1.1 MD15G1168400.v1.1 MD17G1213400.v1.1
prunus_persica	Prupe.3G088700_v2.0.a1 Prupe.7G248100_v2.0.a1
pyrus_communis	pycom02g02200 pycom15g15020 pycom17g21830
rosa_chinensis	RchiOBHm_Chr2g0087691 RchiOBHm_Chr2g0135081
rosa_laevigata	RLG00000015893 RLG00000019440
rosa_multiflora	Rmu_sc0000811.1_g000024 Rmu_sc0001385.1_g000013 Rmu_sc0003543.1_g000002 Rmu_sc0025266.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109500 Rroxscaffold_2G00153280
rosa_rugosa	Rorug01G0478500 Rorug02G0322700
rosa_samantha	Rh2AG032400 Rh2AG372000 Rh2BG031500 Rh2BG379500 Rh2CG031900 Rh2CG358600 Rh2DG031900 Rh2DG396100
rosa_wichuraiana	Rw0G013550 Rw2G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	56, 108, 227
AclI	AACGTT	1 cut(s)	457
AclWI	GGATC	2 cut(s)	84, 97
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	239, 302
AfiI	CCNNNNNNNGG	3 cut(s)	66, 221, 433
AgsI	TTSAA	5 cut(s)	125, 239, 401, 463, 619
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	5 cut(s)	79, 134, 146, 356, 508
AluI	AGCT	5 cut(s)	79, 134, 146, 356, 508
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	95, 294
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	84, 97
AoxI	GGCC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	70, 176, 296, 505
ApoI	RAATTY	2 cut(s)	239, 302
AspA2I	CCTAGG	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	94, 485
AsuHPI	GGTGA	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	337
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	57, 188, 283, 517
BccI	CCATC	4 cut(s)	68, 202, 215, 611
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	609
BcnI	CCSGG	2 cut(s)	94, 485
BcoDI	GTCTC	2 cut(s)	95, 294
BfaI	CTAG	3 cut(s)	86, 285, 542
BfmI	CTRYAG	3 cut(s)	141, 216, 308
BisI	GCNGC	5 cut(s)	57, 71, 177, 297, 506
BlnI	CCTAGG	1 cut(s)	85
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	5 cut(s)	58, 72, 178, 298, 507
Bme1390I	CCNGG	3 cut(s)	94, 485, 609
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 91, 482
BmrFI	CCNGG	3 cut(s)	94, 485, 609
BmsI	GCATC	5 cut(s)	43, 119, 163, 271, 580
BpmI	CTGGAG	1 cut(s)	476
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	94, 485
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	85, 93, 607
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 221, 433
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	3 cut(s)	85, 93, 607
BseGI	GGATG	2 cut(s)	283, 603
BseLI	CCNNNNNNNGG	3 cut(s)	66, 221, 433
BseMII	CTCAG	2 cut(s)	339, 576
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	4 cut(s)	57, 188, 283, 517
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	93, 484
BslI	CCNNNNNNNGG	3 cut(s)	66, 221, 433
BsmAI	GTCTC	2 cut(s)	95, 294
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	89, 118
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	3 cut(s)	56, 108, 227
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	340, 577
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	6, 91, 482
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	2 cut(s)	84, 97
BspT104I	TTCGAA	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	294
BssECI	CCNNGG	3 cut(s)	85, 93, 607
BssMI	GATC	2 cut(s)	89, 118
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	4 cut(s)	205, 216, 337, 582
BstDEI	CTNAG	2 cut(s)	348, 585
BstF5I	GGATG	2 cut(s)	283, 603
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	2 cut(s)	92, 121
BstMAI	GTCTC	2 cut(s)	95, 294
BstMBI	GATC	2 cut(s)	89, 118
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 224, 353, 502, 514, 577, 586
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	3 cut(s)	92, 483, 607
BstSFI	CTRYAG	3 cut(s)	141, 216, 308
BstSLI	GKGCMC	1 cut(s)	337
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	57, 188, 283, 517
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	283, 603
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	2 cut(s)	337, 536
Cac8I	GCNNGC	4 cut(s)	205, 216, 337, 582
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	74, 497
DdeI	CTNAG	2 cut(s)	348, 585
DpnI	GATC	2 cut(s)	91, 120
DpnII	GATC	2 cut(s)	89, 118
EaeI	YGGCCR	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	2 cut(s)	77, 500
FatI	CATG	2 cut(s)	73, 496
Fnu4HI	GCNGC	5 cut(s)	57, 71, 177, 297, 506
FokI	GGATG	2 cut(s)	290, 590
Fsp4HI	GCNGC	5 cut(s)	57, 71, 177, 297, 506
FspBI	CTAG	3 cut(s)	86, 285, 542
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	5 cut(s)	57, 71, 177, 297, 506
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	93, 484
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	77, 500
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	1 cut(s)	619
HpaII	CCGG	2 cut(s)	93, 484
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	2 cut(s)	335, 550
Hpy188III	TCNNGA	5 cut(s)	17, 64, 122, 427, 524
Hpy8I	GTNNAC	2 cut(s)	335, 550
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	12, 457
HpyCH4V	TGCA	7 cut(s)	73, 176, 203, 218, 335, 473, 571
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 224, 353, 502, 514, 577, 586
HpyF3I	CTNAG	2 cut(s)	348, 585
HpySE526I	ACGT	2 cut(s)	12, 457
Hsp92II	CATG	2 cut(s)	77, 500
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	89, 118
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	4 cut(s)	57, 188, 283, 517
LweI	GCATC	5 cut(s)	43, 119, 163, 271, 580
MaeI	CTAG	3 cut(s)	86, 285, 542
MaeII	ACGT	2 cut(s)	12, 457
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	2 cut(s)	91, 120
MboI	GATC	2 cut(s)	89, 118
MboII	GAAGA	3 cut(s)	44, 182, 622
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	2 cut(s)	239, 302
MnlI	CCTC	6 cut(s)	18, 60, 91, 343, 471, 633
Mph1103I	ATGCAT	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	2 cut(s)	93, 484
MspR9I	CCNGG	3 cut(s)	94, 485, 609
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	7 cut(s)	76, 224, 353, 502, 514, 577, 586
NciI	CCSGG	2 cut(s)	94, 485
NdeII	GATC	2 cut(s)	89, 118
NlaIII	CATG	2 cut(s)	77, 500
NlaIV	GGNNCC	3 cut(s)	6, 91, 482
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	619
PkrI	GCNGC	5 cut(s)	58, 72, 178, 298, 507
PsiI	TTATAA	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	3 cut(s)	6, 91, 482
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	134
SatI	GCNGC	5 cut(s)	57, 71, 177, 297, 506
Sau3AI	GATC	2 cut(s)	89, 118
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	94, 485, 609
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	5 cut(s)	43, 119, 163, 271, 580
SfcI	CTRYAG	3 cut(s)	141, 216, 308
SfuI	TTCGAA	1 cut(s)	366
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	239, 302
SsiI	CCGC	3 cut(s)	56, 108, 227
SspMI	CTAG	3 cut(s)	86, 285, 542
StyD4I	CCNGG	3 cut(s)	92, 483, 607
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	15, 460
TaqI	TCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	239, 302
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	619
TscAI	CASTG	2 cut(s)	337, 536
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	4 cut(s)	70, 176, 296, 505
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	183, 401
TspRI	CASTG	2 cut(s)	337, 536
VneI	GTGCAC	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	239, 302
XceI	RCATGY	1 cut(s)	500
XmaJI	CCTAGG	1 cut(s)	85
XspI	CTAG	3 cut(s)	86, 285, 542
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.