Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000811.1

Orthogroup ID

OG0003445

Physical Location & Seq

Genomic Coordinates Reverse (-)

126178 .. 127704

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000811.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggataatcagcttctggagagagcacttgaagaatgcggtaatgatttggattcagctatcagaagtttgaatgagctgcgcttaagttctgctgcaaataaatccggtgtagcatcagaagcaaatgtgcaaccccaggcacaagtagcaacaaatggagaagtttctggtaatgatgatctatcaggacaaaataacctgcccacgcaaggagccgactgggtggagctctttgttagagagatgatgagtgcctccaacatggatgatgctaaagcccgtgcttcaagagtgcttgaggtcttggagaaatccatctgctcacgtgcatccacagaggcagcccaaagctttcaccaggaaaatttgatgctgaaggaacaagtggaagctcttattcaggaaaatacaatcctgaagcgagctgtatctactcagcatgaacgtcaaaaagagtatgaagatagaggccaggaattggagcatctgaagcaagtggtggcccagtaccaggaacaactgagaactcttgaggtgaacaactatgcacttacgatgcacctgaagcaagctcagcaaagcagctccattccggggcgatttcaccctgatgtgttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

207

Amino Acids

23.16

Weight (kDa)

4.87

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32440 AT5G32440 AT5G32440
fragaria_vesca	FvH4_1g02660 FvH4_6g29540
malus_domestica	MD02G1026900.v1.1 MD10G1231400.v1.1 MD15G1168400.v1.1 MD17G1213400.v1.1
prunus_persica	Prupe.3G088700_v2.0.a1 Prupe.7G248100_v2.0.a1
pyrus_communis	pycom02g02200 pycom15g15020 pycom17g21830
rosa_chinensis	RchiOBHm_Chr2g0087691 RchiOBHm_Chr2g0135081
rosa_laevigata	RLG00000015893 RLG00000019440
rosa_multiflora	Rmu_sc0000811.1_g000024 Rmu_sc0001385.1_g000013 Rmu_sc0003543.1_g000002 Rmu_sc0025266.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109500 Rroxscaffold_2G00153280
rosa_rugosa	Rorug01G0478500 Rorug02G0322700
rosa_samantha	Rh2AG032400 Rh2AG372000 Rh2BG031500 Rh2BG379500 Rh2CG031900 Rh2CG358600 Rh2DG031900 Rh2DG396100
rosa_wichuraiana	Rw0G013550 Rw2G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	481
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	4 cut(s)	398, 440, 512, 587
AcvI	CACGTG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	4 cut(s)	212, 481, 514, 597
AflII	CTTAAG	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	32, 73, 291
AjnI	CCWGG	4 cut(s)	138, 360, 474, 513
AluBI	AGCT	9 cut(s)	13, 59, 79, 232, 354, 395, 428, 575, 588
AluI	AGCT	9 cut(s)	13, 59, 79, 232, 354, 395, 428, 575, 588
Alw21I	GWGCWC	2 cut(s)	28, 234
AlwNI	CAGNNNCTG	1 cut(s)	16
AoxI	GGCC	2 cut(s)	472, 504
ApeKI	GCWGC	4 cut(s)	79, 95, 344, 585
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	3 cut(s)	350, 550, 599
BanII	GRGCYC	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	329
Bbv12I	GWGCWC	2 cut(s)	28, 234
BbvI	GCAGC	4 cut(s)	66, 82, 356, 597
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	4 cut(s)	140, 362, 476, 515
BcnI	CCSGG	1 cut(s)	597
BfrI	CTTAAG	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	4 cut(s)	80, 96, 345, 586
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	4 cut(s)	81, 97, 346, 587
Bme1390I	CCNGG	5 cut(s)	140, 362, 476, 515, 597
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	5 cut(s)	140, 362, 476, 515, 597
BmrI	ACTGGG	2 cut(s)	232, 502
BmsI	GCATC	6 cut(s)	125, 262, 341, 363, 496, 549
BmuI	ACTGGG	2 cut(s)	232, 502
BpmI	CTGGAG	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	320, 554
BpuMI	CCSGG	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	138, 596
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 481, 514, 597
Bse1I	ACTGG	2 cut(s)	227, 508
BseBI	CCWGG	4 cut(s)	140, 362, 476, 515
BseDI	CCNNGG	2 cut(s)	138, 596
BseGI	GGATG	2 cut(s)	274, 332
BseLI	CCNNNNNNNGG	4 cut(s)	212, 481, 514, 597
BseMII	CTCAG	3 cut(s)	452, 515, 590
BseNI	ACTGG	2 cut(s)	227, 508
BseXI	GCAGC	4 cut(s)	66, 82, 356, 597
BshFI	GGCC	2 cut(s)	474, 506
BsiHKAI	GWGCWC	2 cut(s)	28, 234
BsiSI	CCGG	2 cut(s)	108, 596
BslI	CCNNNNNNNGG	4 cut(s)	212, 481, 514, 597
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	474, 506
Bsp1286I	GDGCHC	2 cut(s)	28, 234
Bsp143I	GATC	1 cut(s)	181
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	474, 506
BspCNI	CTCAG	3 cut(s)	451, 516, 589
BspLI	GGNNCC	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	227, 508
BssECI	CCNNGG	2 cut(s)	138, 596
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	4 cut(s)	140, 362, 476, 515
BstAFI	CTTAAG	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	426, 573
BstDEI	CTNAG	3 cut(s)	438, 524, 576
BstF5I	GGATG	2 cut(s)	274, 332
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 149, 493, 568, 577
BstNI	CCWGG	4 cut(s)	140, 362, 476, 515
BstSCI	CCNGG	5 cut(s)	138, 360, 474, 513, 595
BstV1I	GCAGC	4 cut(s)	66, 82, 356, 597
BsuRI	GGCC	2 cut(s)	474, 506
BtsCI	GGATG	2 cut(s)	274, 332
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	426, 573
CaiI	CAGNNNCTG	1 cut(s)	16
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	2 cut(s)	265, 443
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	3 cut(s)	438, 524, 576
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	4 cut(s)	398, 440, 512, 587
Eco72I	CACGTG	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	4 cut(s)	138, 360, 474, 513
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	2 cut(s)	268, 446
FaiI	YATR	4 cut(s)	266, 444, 462, 549
FatI	CATG	2 cut(s)	264, 442
Fnu4HI	GCNGC	4 cut(s)	80, 96, 345, 586
FokI	GGATG	2 cut(s)	281, 319
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	80, 96, 345, 586
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	4 cut(s)	80, 96, 345, 586
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	474, 506
HapII	CCGG	2 cut(s)	108, 596
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	268, 446
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	2 cut(s)	108, 596
HphI	GGTGA	3 cut(s)	350, 550, 599
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	3 cut(s)	65, 121, 492
Hpy188III	TCNNGA	6 cut(s)	17, 189, 291, 404, 418, 533
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	1 cut(s)	373
HpyCH4IV	ACGT	2 cut(s)	328, 448
HpyCH4V	TGCA	5 cut(s)	98, 133, 332, 551, 562
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 149, 493, 568, 577
HpyF3I	CTNAG	3 cut(s)	438, 524, 576
HpySE526I	ACGT	2 cut(s)	328, 448
Hsp92II	CATG	2 cut(s)	268, 446
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	4 cut(s)	215, 229, 484, 593
Lsp1109I	GCAGC	4 cut(s)	66, 82, 356, 597
LweI	GCATC	6 cut(s)	125, 262, 341, 363, 496, 549
MaeII	ACGT	2 cut(s)	328, 448
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	44, 476
MhlI	GDGCHC	2 cut(s)	28, 234
MluCI	AATT	2 cut(s)	367, 479
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	5 cut(s)	268, 295, 334, 464, 529
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	612
MspCI	CTTAAG	1 cut(s)	85
MspI	CCGG	2 cut(s)	108, 596
MspR9I	CCNGG	5 cut(s)	140, 362, 476, 515, 597
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	4 cut(s)	140, 362, 476, 515
MwoI	GCNNNNNNNGC	5 cut(s)	122, 149, 493, 568, 577
NciI	CCSGG	1 cut(s)	597
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	268, 446
NlaIV	GGNNCC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	81, 97, 346, 587
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	4 cut(s)	138, 360, 474, 513
PspCI	CACGTG	1 cut(s)	329
PspGI	CCWGG	4 cut(s)	138, 360, 474, 513
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	4 cut(s)	80, 96, 345, 586
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	505
ScrFI	CCNGG	5 cut(s)	140, 362, 476, 515, 597
SduI	GDGCHC	2 cut(s)	28, 234
SfaNI	GCATC	6 cut(s)	125, 262, 341, 363, 496, 549
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	3 cut(s)	85, 299, 533
SmoI	CTYRAG	3 cut(s)	85, 299, 533
Sse9I	AATT	2 cut(s)	367, 479
SsiI	CCGC	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	5 cut(s)	138, 360, 474, 513, 595
TaiI	ACGT	2 cut(s)	331, 451
TasI	AATT	2 cut(s)	367, 479
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseI	GCWGC	4 cut(s)	79, 95, 344, 585
TspDTI	ATGAA	2 cut(s)	459, 477
Van91I	CCANNNNNTGG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.