RchiOBHm_Chr2g0087691

Ubiquitin system component Cue protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003445
Physical Location & Seq
Forward (+)
2399004 .. 2401666
2663 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46312

Sequence Viewer

Length: 819 bp
ATGTCTGCCGTAGTGTGCGGGAAGAGATCATCGATATTCGAAGAGCAGCTCCCCTCATCAACGTCATCGTCTCCTCCCGTTTCCTCCAAGAGAATTCGCTTTTCTTCTTCTCCAGTACGCTTCTCCCCTCCCACGACGACGTCGTTTGGTTCGTCCTTCATCGACCAGCTCAGGGCCGTTTTCCCGGACATGGATAATCAGCTTCTGGAGAGAGCACTTGAAGAATGCGGTAATGATTTGGATTCAGCTATCAGAAGTTTGAATGAGCTGCGCTTAAGTTCTGCTGCAAATAAATCCGGTGTAGCATCAGAAGCAAATGTGCAACCCCAGGCACAAGGTGCAGTAGCAACAAATGGAGAAGTTTCTGGTAATGATGATCTATCAGGACAAAATAACCTGCCCACTCAAGGAGCCGACTGGGTGGAGCTCTTTGTTAGAGAGATGATGAGTGCCTCCAACATGGATGATGCTAAAGCCCGTGCTTCAAGAGTGCTTGAGGTCTTGGAGAAATCCATCCGCTCACGTGCATCCACAGAGGCAGCCCAAAGCTTTCACCAGGAAAATTTGATGCTGAAGGAACAAGTGGAAGCTCTTATTCAGGAAAATACAATCCTGAAGCGAGCTGTATCCACTCAGCATGAACGTCAAAAAGAGTATGAAGATAGAGGCCAGGAATTGGAGCATCTGAAGCAAGTGGTGGCCCAGTACCAGGAACAACTGAGAACTCTTGAGGTGAACAACTATGCACTTACGATGCACCTGAAGCAAGCTCAGCAAAGCAGCTCCATTCCAGGGCGATTTCACCCTGATGTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

272

Amino Acids

30.12

Weight (kDa)

5.27

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CUE PF02845 54 - 90 7.9e-07 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 405
AccB7I CCANNNNNTGG 1 cut(s) 676
AccBSI CCGCTC 1 cut(s) 519
AciI CCGC 3 cut(s) 18, 228, 517
AcsI RAATTY 2 cut(s) 93, 562
AcuI CTGAAG 4 cut(s) 593, 635, 707, 782
AcvI CACGTG 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 2 cut(s) 117, 707
AfiI CCNNNNNNNGG 6 cut(s) 172, 190, 407, 676, 709, 792
AflII CTTAAG 1 cut(s) 274
AgsI TTSAA 3 cut(s) 221, 262, 486
AjnI CCWGG 5 cut(s) 327, 555, 669, 708, 790
Alw21I GWGCWC 2 cut(s) 217, 429
Alw26I GTCTC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 205
AoxI GGCC 3 cut(s) 174, 667, 699
ApeKI GCWGC 5 cut(s) 46, 268, 284, 539, 780
ApoI RAATTY 2 cut(s) 93, 562
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 2 cut(s) 174, 700
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 3 cut(s) 545, 745, 794
AsuII TTCGAA 1 cut(s) 39
BanII GRGCYC 1 cut(s) 429
BbrPI CACGTG 1 cut(s) 524
Bbv12I GWGCWC 2 cut(s) 217, 429
BbvI GCAGC 5 cut(s) 58, 255, 271, 551, 792
BccI CCATC 1 cut(s) 521
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 5 cut(s) 329, 557, 671, 710, 792
BciVI GTATCC 1 cut(s) 637
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 405
BfuI GTATCC 1 cut(s) 637
BisI GCNGC 5 cut(s) 47, 269, 285, 540, 781
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 5 cut(s) 48, 270, 286, 541, 782
Bme1390I CCNGG 6 cut(s) 185, 329, 557, 671, 710, 792
BmgT120I GGNCC 2 cut(s) 174, 700
BmiI GGNNCC 1 cut(s) 412
BmrFI CCNGG 6 cut(s) 185, 329, 557, 671, 710, 792
BmrI ACTGGG 2 cut(s) 427, 697
BmsI GCATC 6 cut(s) 314, 457, 536, 558, 691, 744
BmuI ACTGGG 2 cut(s) 427, 697
BpmI CTGGAG 2 cut(s) 96, 227
Bpu10I CCTNAGC 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 771
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 3 cut(s) 390, 515, 749
BpuMI CCSGG 1 cut(s) 185
Bsa29I ATCGAT 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 327, 791
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 190, 407, 676, 709, 792
Bse1I ACTGG 3 cut(s) 113, 422, 703
BseBI CCWGG 5 cut(s) 329, 557, 671, 710, 792
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 327, 791
BseGI GGATG 3 cut(s) 469, 513, 527
BseLI CCNNNNNNNGG 6 cut(s) 172, 190, 407, 676, 709, 792
BseMII CTCAG 4 cut(s) 184, 647, 710, 785
BseNI ACTGG 3 cut(s) 113, 422, 703
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 5 cut(s) 58, 255, 271, 551, 792
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 3 cut(s) 176, 669, 701
BshVI ATCGAT 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 217, 429
BsiSI CCGG 2 cut(s) 185, 297
BslI CCNNNNNNNGG 6 cut(s) 172, 190, 407, 676, 709, 792
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 3 cut(s) 176, 669, 701
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 217, 429
Bsp143I GATC 2 cut(s) 26, 376
Bsp1720I GCTNAGC 1 cut(s) 771
BspACI CCGC 3 cut(s) 18, 228, 517
BspANI GGCC 3 cut(s) 176, 669, 701
BspCNI CTCAG 4 cut(s) 183, 646, 711, 784
BspDI ATCGAT 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 405
BspQI GCTCTTC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 39
BspTI CTTAAG 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 519
BsrI ACTGG 3 cut(s) 113, 422, 703
BssECI CCNNGG 2 cut(s) 327, 791
BssMI GATC 2 cut(s) 26, 376
BssNI GRCGYC 1 cut(s) 140
Bst2UI CCWGG 5 cut(s) 329, 557, 671, 710, 792
Bst6I CTCTTC 2 cut(s) 17, 36
BstACI GRCGYC 1 cut(s) 140
BstAFI CTTAAG 1 cut(s) 274
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 621, 768
BstDEI CTNAG 4 cut(s) 170, 633, 719, 771
BstF5I GGATG 3 cut(s) 469, 513, 527
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 2 cut(s) 29, 379
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 26, 376
BstMWI GCNNNNNNNGC 5 cut(s) 311, 338, 688, 763, 772
BstNI CCWGG 5 cut(s) 329, 557, 671, 710, 792
BstSCI CCNGG 6 cut(s) 183, 327, 555, 669, 708, 790
BstV1I GCAGC 5 cut(s) 58, 255, 271, 551, 792
Bsu15I ATCGAT 1 cut(s) 32
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 3 cut(s) 176, 669, 701
BsuTUI ATCGAT 1 cut(s) 32
BtsCI GGATG 3 cut(s) 469, 513, 527
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 621, 768
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 174, 700
ClaI ATCGAT 1 cut(s) 32
Csp6I GTAC 2 cut(s) 116, 706
CviAII CATG 3 cut(s) 190, 460, 638
CviQI GTAC 2 cut(s) 116, 706
DdeI CTNAG 4 cut(s) 170, 633, 719, 771
DpnI GATC 2 cut(s) 28, 378
DpnII GATC 2 cut(s) 26, 376
DraIII CACNNNGTG 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 17, 36
EarI CTCTTC 2 cut(s) 17, 36
Ecl136II GAGCTC 1 cut(s) 427
Eco24I GRGCYC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 4 cut(s) 593, 635, 707, 782
Eco72I CACGTG 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 5 cut(s) 327, 555, 669, 708, 790
EcoT38I GRGCYC 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 3 cut(s) 193, 463, 641
FaiI YATR 5 cut(s) 191, 461, 639, 657, 744
FatI CATG 3 cut(s) 189, 459, 637
FauI CCCGC 1 cut(s) 11
Fnu4HI GCNGC 5 cut(s) 47, 269, 285, 540, 781
FokI GGATG 3 cut(s) 476, 500, 514
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 5 cut(s) 47, 269, 285, 540, 781
GlaI GCGC 1 cut(s) 272
GluI GCNGC 5 cut(s) 47, 269, 285, 540, 781
GsuI CTGGAG 2 cut(s) 96, 227
HaeIII GGCC 3 cut(s) 176, 669, 701
HapII CCGG 2 cut(s) 185, 297
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 3 cut(s) 193, 463, 641
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 547
HinfI GANTC 1 cut(s) 242
HpaII CCGG 2 cut(s) 185, 297
HphI GGTGA 3 cut(s) 545, 745, 794
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 3 cut(s) 254, 310, 687
Hpy188III TCNNGA 6 cut(s) 206, 384, 486, 599, 613, 728
Hpy8I GTNNAC 1 cut(s) 736
Hpy99I CGWCG 3 cut(s) 139, 142, 145
HpyAV CCTTC 2 cut(s) 166, 568
HpyCH4IV ACGT 4 cut(s) 62, 140, 523, 643
HpyCH4V TGCA 6 cut(s) 287, 322, 341, 527, 746, 757
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 338, 688, 763, 772
HpyF3I CTNAG 4 cut(s) 170, 633, 719, 771
HpySE526I ACGT 4 cut(s) 62, 140, 523, 643
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 3 cut(s) 193, 463, 641
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 26, 376
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 5 cut(s) 54, 410, 424, 679, 788
Lsp1109I GCAGC 5 cut(s) 58, 255, 271, 551, 792
LweI GCATC 6 cut(s) 314, 457, 536, 558, 691, 744
MaeII ACGT 4 cut(s) 62, 140, 523, 643
MalI GATC 2 cut(s) 28, 378
MbiI CCGCTC 1 cut(s) 519
MboI GATC 2 cut(s) 26, 376
MboII GAAGA 6 cut(s) 34, 53, 96, 99, 233, 671
MhlI GDGCHC 2 cut(s) 217, 429
MluCI AATT 3 cut(s) 93, 562, 674
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 9 cut(s) 64, 84, 94, 138, 463, 490, 529, 659, 724
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 807
MspCI CTTAAG 1 cut(s) 274
MspI CCGG 2 cut(s) 185, 297
MspR9I CCNGG 6 cut(s) 185, 329, 557, 671, 710, 792
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 5 cut(s) 329, 557, 671, 710, 792
MwoI GCNNNNNNNGC 5 cut(s) 311, 338, 688, 763, 772
NciI CCSGG 1 cut(s) 185
NdeII GATC 2 cut(s) 26, 376
NlaIII CATG 3 cut(s) 193, 463, 641
NlaIV GGNNCC 1 cut(s) 412
NspV TTCGAA 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 2 cut(s) 140, 149
PctI GAATGC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 242
PflFI GACNNNGTC 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 676
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 5 cut(s) 48, 270, 286, 541, 782
PmaCI CACGTG 1 cut(s) 524
PmlI CACGTG 1 cut(s) 524
Ppu21I YACGTR 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 5 cut(s) 327, 555, 669, 708, 790
PspCI CACGTG 1 cut(s) 524
PspGI CCWGG 5 cut(s) 327, 555, 669, 708, 790
PspN4I GGNNCC 1 cut(s) 412
PspPI GGNCC 2 cut(s) 174, 700
PstNI CAGNNNCTG 1 cut(s) 205
PsyI GACNNNGTC 1 cut(s) 139
RsaI GTAC 2 cut(s) 117, 707
RsaNI GTAC 2 cut(s) 116, 706
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 5 cut(s) 47, 269, 285, 540, 781
Sau3AI GATC 2 cut(s) 26, 376
Sau96I GGNCC 2 cut(s) 174, 700
ScrFI CCNGG 6 cut(s) 185, 329, 557, 671, 710, 792
SduI GDGCHC 2 cut(s) 217, 429
SfaNI GCATC 6 cut(s) 314, 457, 536, 558, 691, 744
SfuI TTCGAA 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 4 cut(s) 274, 405, 494, 728
SmoI CTYRAG 4 cut(s) 274, 405, 494, 728
Sse9I AATT 3 cut(s) 93, 562, 674
SsiI CCGC 3 cut(s) 18, 228, 517
SstI GAGCTC 1 cut(s) 429
StyD4I CCNGG 6 cut(s) 183, 327, 555, 669, 708, 790
TaiI ACGT 4 cut(s) 65, 143, 526, 646
TaqI TCGA 3 cut(s) 32, 39, 162
TasI AATT 3 cut(s) 93, 562, 674
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseI GCWGC 5 cut(s) 46, 268, 284, 539, 780
TspDTI ATGAA 3 cut(s) 148, 654, 672
Tth111I GACNNNGTC 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 676
Vha464I CTTAAG 1 cut(s) 274
XapI RAATTY 2 cut(s) 93, 562
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.