Prupe.3G088700_v2.0.a1

CUE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003445
Physical Location & Seq
Forward (+)
6588351 .. 6592182
3832 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G088700.1

Sequence Viewer

Length: 783 bp
ATGTCTGCGGCAGTGTGTGGAAGCAAGAGGTCCTTTTTCGAAGAGCTTCCTCCATCGCCGCCTCTCTCAAAGAGGCTTCGCTGTTCTTCTTCTACATCTCCCATTCGCTTCTCTGCTCCTTATCTTCTCGATCAGCTTCGCTCTCTCTTCCCTCAGATGGACCCTCAGGTTCTTGAGAGAGCATTGGAAGAATGTGGCAATGATATAGATGCTGCCGTCAAGTTGCTGCATGAGCTTCGCATAGGATCTGCAGAAGAAAATTCTGCCTCTGCTGCAGAACAAGATGATTCGGTAGCTCAAGGTATATTGACTAATGATGAAGCTGCAGCTGCTTCTGAGAATCCATCAGTTCCCAGCAACCTGCCTGTAGATGGTGCCGAATGGGTTGAACTGTTTGTCAGGGAAATGATGAGTGCCAATAGTGTGGATGATGCTAGGGCCCGTGCTGCAAAAGTGCTAGAGGTTTTAGAAAAATCCATCAGTGCACGTGCTGGTGCTGAGGCAACCCAAAATTTTCAAAAGGAAAATATGCTGCTGAAACAACAAATTGAAGGACTGATAAGGGAGAATACCATTCTTAAACGAGCTGTTTCTATCCAGCATGAACGTCAGAAAGAGTATGAGGAGCGGAACCAAGAATTCCAGAATCTGAAGCAGTTGGTGTCTCAATATCAGGAACAGTTGAGAACACTTGAGGTTAACAACTATGCCTTGACAATGCATCTGAAGCAGGCTCAGCAAAGCAACTCCATCCCTGGACGTTTTCATCCTGATGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CUE

Protein Analysis

261

Amino Acids

29.06

Weight (kDa)

5.05

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 374
AccBSI CCGCTC 1 cut(s) 628
AciI CCGC 3 cut(s) 8, 59, 628
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 3 cut(s) 259, 511, 638
AcuI CTGAAG 2 cut(s) 671, 746
AcvI CACGTG 1 cut(s) 488
AfiI CCNNNNNNNGG 2 cut(s) 157, 371
AgsI TTSAA 3 cut(s) 389, 518, 551
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 7 cut(s) 46, 136, 235, 296, 323, 329, 587
AluI AGCT 7 cut(s) 46, 136, 235, 296, 323, 329, 587
Alw21I GWGCWC 1 cut(s) 487
Alw26I GTCTC 1 cut(s) 669
Alw44I GTGCAC 1 cut(s) 483
AlwI GGATC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 649
AoxI GGCC 1 cut(s) 438
ApaI GGGCCC 1 cut(s) 442
ApaLI GTGCAC 1 cut(s) 483
ApeKI GCWGC 8 cut(s) 212, 226, 272, 323, 326, 329, 446, 532
ApoI RAATTY 3 cut(s) 259, 511, 638
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 4 cut(s) 30, 160, 438, 439
AsuII TTCGAA 1 cut(s) 39
AvaII GGWCC 2 cut(s) 30, 160
AxyI CCTNAGG 1 cut(s) 165
BaeGI GKGCMC 2 cut(s) 442, 487
BanI GGYRCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 442
BbrPI CACGTG 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 487
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 8 cut(s) 199, 213, 259, 310, 316, 338, 433, 519
BccI CCATC 6 cut(s) 61, 151, 352, 365, 485, 758
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 669
BfaI CTAG 2 cut(s) 435, 458
BfmI CTRYAG 4 cut(s) 249, 273, 324, 366
BfuAI ACCTGC 1 cut(s) 369
BlpI GCTNAGC 1 cut(s) 735
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 2 cut(s) 30, 160
BmgT120I GGNCC 4 cut(s) 30, 160, 438, 439
BmiI GGNNCC 4 cut(s) 162, 376, 440, 632
BmrFI CCNGG 1 cut(s) 756
BmsI GCATC 3 cut(s) 199, 421, 730
Bpu10I CCTNAGC 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 3 cut(s) 194, 282, 713
BsaAI YACGTR 1 cut(s) 488
BsaJI CCNNGG 1 cut(s) 754
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 371
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 3 cut(s) 433, 750, 766
BseLI CCNNNNNNNGG 2 cut(s) 157, 371
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 5 cut(s) 167, 179, 327, 489, 749
BseRI GAGGAG 1 cut(s) 638
BseSI GKGCMC 2 cut(s) 442, 487
BseXI GCAGC 8 cut(s) 199, 213, 259, 310, 316, 338, 433, 519
BseYI CCCAGC 1 cut(s) 353
BshFI GGCC 1 cut(s) 440
BshNI GGYRCC 1 cut(s) 374
BsiHKAI GWGCWC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 157, 371
BsmAI GTCTC 1 cut(s) 669
BsnI GGCC 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 39
Bsp120I GGGCCC 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 442, 487
Bsp143I GATC 2 cut(s) 130, 245
Bsp1720I GCTNAGC 1 cut(s) 735
BspACI CCGC 3 cut(s) 8, 59, 628
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 5 cut(s) 166, 178, 328, 490, 748
BspLI GGNNCC 4 cut(s) 162, 376, 440, 632
BspMAI CTGCAG 3 cut(s) 253, 277, 328
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 754
BssMI GATC 2 cut(s) 130, 245
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 2 cut(s) 393, 681
Bst6I CTCTTC 2 cut(s) 36, 152
BstBAI YACGTR 1 cut(s) 488
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 732
BstDEI CTNAG 5 cut(s) 153, 165, 336, 498, 735
BstF5I GGATG 3 cut(s) 433, 750, 766
BstKTI GATC 2 cut(s) 133, 248
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 2 cut(s) 130, 245
BstMWI GCNNNNNNNGC 6 cut(s) 232, 272, 329, 446, 727, 736
BstNI CCWGG 1 cut(s) 756
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 4 cut(s) 249, 273, 324, 366
BstSLI GKGCMC 2 cut(s) 442, 487
BstV1I GCAGC 8 cut(s) 199, 213, 259, 310, 316, 338, 433, 519
BstX2I RGATCY 1 cut(s) 245
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 1 cut(s) 245
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 440
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 3 cut(s) 433, 750, 766
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 487
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 732
CaiI CAGNNNCTG 1 cut(s) 649
Cfr13I GGNCC 4 cut(s) 30, 160, 438, 439
CviAII CATG 2 cut(s) 230, 602
DdeI CTNAG 5 cut(s) 153, 165, 336, 498, 735
DpnI GATC 2 cut(s) 132, 247
DpnII GATC 2 cut(s) 130, 245
Eam1104I CTCTTC 2 cut(s) 36, 152
EarI CTCTTC 2 cut(s) 36, 152
Eco24I GRGCYC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 30, 160
Eco57I CTGAAG 2 cut(s) 671, 746
Eco72I CACGTG 1 cut(s) 488
Eco81I CCTNAGG 1 cut(s) 165
EcoO109I RGGNCCY 2 cut(s) 30, 438
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 754
EcoT22I ATGCAT 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 442
FaeI CATG 2 cut(s) 233, 605
FaiI YATR 8 cut(s) 206, 231, 242, 305, 530, 603, 621, 708
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 2 cut(s) 229, 601
FokI GGATG 3 cut(s) 440, 737, 753
FriOI GRGCYC 1 cut(s) 442
FspBI CTAG 2 cut(s) 435, 458
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 440
Hin1II CATG 2 cut(s) 233, 605
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 3 cut(s) 287, 340, 646
HpaI GTTAAC 1 cut(s) 700
Hpy166II GTNNAC 2 cut(s) 485, 700
Hpy188I TCNGA 5 cut(s) 156, 337, 612, 651, 726
Hpy188III TCNNGA 5 cut(s) 128, 173, 643, 674, 770
Hpy8I GTNNAC 2 cut(s) 485, 700
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 2 cut(s) 393, 681
HpyCH4IV ACGT 3 cut(s) 487, 607, 760
HpyCH4V TGCA 7 cut(s) 229, 251, 275, 326, 449, 485, 721
HpyF10VI GCNNNNNNNGC 6 cut(s) 232, 272, 329, 446, 727, 736
HpyF3I CTNAG 5 cut(s) 153, 165, 336, 498, 735
HpySE526I ACGT 3 cut(s) 487, 607, 760
Hsp92II CATG 2 cut(s) 233, 605
KspAI GTTAAC 1 cut(s) 700
Kzo9I GATC 2 cut(s) 130, 245
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 2 cut(s) 121, 625
Lsp1109I GCAGC 8 cut(s) 199, 213, 259, 310, 316, 338, 433, 519
LweI GCATC 3 cut(s) 199, 421, 730
MaeI CTAG 2 cut(s) 435, 458
MaeII ACGT 3 cut(s) 487, 607, 760
MalI GATC 2 cut(s) 132, 247
MbiI CCGCTC 1 cut(s) 628
MboI GATC 2 cut(s) 130, 245
MboII GAAGA 7 cut(s) 53, 78, 81, 116, 139, 200, 266
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 2 cut(s) 442, 487
MluCI AATT 4 cut(s) 259, 511, 546, 638
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 3 cut(s) 579, 699, 781
MslI CAYNNNNRTG 1 cut(s) 771
MspA1I CMGCKG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 756
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 6 cut(s) 232, 272, 329, 446, 727, 736
NdeII GATC 2 cut(s) 130, 245
NlaIII CATG 2 cut(s) 233, 605
NlaIV GGNNCC 4 cut(s) 162, 376, 440, 632
NsiI ATGCAT 1 cut(s) 723
NspV TTCGAA 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 3 cut(s) 287, 340, 646
PmaCI CACGTG 1 cut(s) 488
PmlI CACGTG 1 cut(s) 488
Ppu21I YACGTR 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 754
PspCI CACGTG 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 4 cut(s) 162, 376, 440, 632
PspOMI GGGCCC 1 cut(s) 438
PspPI GGNCC 4 cut(s) 30, 160, 438, 439
PspPPI RGGWCCY 1 cut(s) 30
PstI CTGCAG 3 cut(s) 253, 277, 328
PstNI CAGNNNCTG 1 cut(s) 649
PsuI RGATCY 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 771
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 579, 699, 781
Sau3AI GATC 2 cut(s) 130, 245
Sau96I GGNCC 4 cut(s) 30, 160, 438, 439
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 2 cut(s) 442, 487
SfaNI GCATC 3 cut(s) 199, 421, 730
SfcI CTRYAG 4 cut(s) 249, 273, 324, 366
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 2 cut(s) 30, 160
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 3 cut(s) 173, 297, 692
SmoI CTYRAG 3 cut(s) 173, 297, 692
Sse9I AATT 4 cut(s) 259, 511, 546, 638
SsiI CCGC 3 cut(s) 8, 59, 628
SspMI CTAG 2 cut(s) 435, 458
StyD4I CCNGG 1 cut(s) 754
TaaI ACNGT 2 cut(s) 393, 681
TaiI ACGT 3 cut(s) 490, 610, 763
TaqI TCGA 2 cut(s) 39, 129
TasI AATT 4 cut(s) 259, 511, 546, 638
TauI GCSGC 2 cut(s) 11, 61
TfiI GAWTC 3 cut(s) 287, 340, 646
Tru1I TTAA 3 cut(s) 579, 699, 781
Tru9I TTAA 3 cut(s) 579, 699, 781
TscAI CASTG 2 cut(s) 18, 487
TseI GCWGC 8 cut(s) 212, 226, 272, 323, 326, 329, 446, 532
TspDTI ATGAA 3 cut(s) 333, 618, 755
TspRI CASTG 2 cut(s) 18, 487
VneI GTGCAC 1 cut(s) 483
VpaK11BI GGWCC 2 cut(s) 30, 160
XapI RAATTY 3 cut(s) 259, 511, 638
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 2 cut(s) 435, 458
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.