Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003445

Physical Location & Seq

Genomic Coordinates Reverse (-)

10412724 .. 10414845

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCTGCCATCGTGTGCGGGAAGAGATCATCGATTTTCGGAGACAACTCGCTGCCGTCGACTTCCCCTCCCGTCTCCTCCGCTTCCAAGAGAATCCGCTGCTCCTCTTCTTCCTCCCCGGTTCGCTTCTCTCCTCCCTCCACGACGTCGTTTTCTGCATCGCATTTGATCGAACACCTCAGGGCCGTTTTCCCGGGCATGGACAACCAGCTTCTGGAGAGAGCACTTGAAGAATGTGGTGATGATTTGGATTCGGCTATCAGAAGTTTGAATGAGCTACGTTTAGGTTCTGCTGCAGGAAAATCTGATATGGCTTCAGAAGCAAATGTGCAACTCCAATCACAGGGTGCGGTAGCAACAAATGGAGAGGTTGCAGTTACTGATGATCCATCAGTGCAAAATAACCTTCCCACGGATGGAGCAGAGTGGGTGGAGCTCGTTGTCAGAGAGATGATGAGTGCCTCTAACATGGATGATGCTAAAGCTCGTGCCTCAAGAGTGCTTGAGGCTTTGGAGAAGTCTATTAGTGAGCGTGCAACCGCAGAGGTAGCCCAAAGCTTTCGCCAGGAAAATATGATGCTGAAGGAACAATTGGAAGCTATTATTCAGGAAAATACAATTTTAAAGCGAGCTGTATCCACTCAGCATGAACGGCAGAAGGAGTTTGAAGATAGAGGCCAGGAATTACAGCATCTGAAGCAACTGGTGGCCCAGTACCAGGAACAGTTGAGAACCCTCGAGGTGAACAACTATGCACTTACAATGCACCTAAAGCAGGCACAGCAAAGTAGCTCCATTCCAGGTCGTTTTCATCCGGATGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

276

Amino Acids

30.25

Weight (kDa)

5.26

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32440 AT5G32440 AT5G32440
fragaria_vesca	FvH4_1g02660 FvH4_6g29540
malus_domestica	MD02G1026900.v1.1 MD10G1231400.v1.1 MD15G1168400.v1.1 MD17G1213400.v1.1
prunus_persica	Prupe.3G088700_v2.0.a1 Prupe.7G248100_v2.0.a1
pyrus_communis	pycom02g02200 pycom15g15020 pycom17g21830
rosa_chinensis	RchiOBHm_Chr2g0087691 RchiOBHm_Chr2g0135081
rosa_laevigata	RLG00000015893 RLG00000019440
rosa_multiflora	Rmu_sc0000811.1_g000024 Rmu_sc0001385.1_g000013 Rmu_sc0003543.1_g000002 Rmu_sc0025266.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109500 Rroxscaffold_2G00153280
rosa_rugosa	Rorug01G0478500 Rorug02G0322700
rosa_samantha	Rh2AG032400 Rh2AG372000 Rh2BG031500 Rh2BG379500 Rh2CG031900 Rh2CG358600 Rh2DG031900 Rh2DG396100
rosa_wichuraiana	Rw0G013550 Rw2G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	149
AbsI	CCTCGAGG	1 cut(s)	737
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	59
AccIII	TCCGGA	1 cut(s)	814
AciI	CCGC	5 cut(s)	18, 81, 97, 350, 540
AclWI	GGATC	1 cut(s)	380
AcuI	CTGAAG	3 cut(s)	300, 602, 716
AcyI	GRCGYC	1 cut(s)	146
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	7 cut(s)	199, 214, 343, 412, 416, 718, 775
AgsI	TTSAA	3 cut(s)	230, 271, 668
AjnI	CCWGG	4 cut(s)	564, 678, 717, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	8 cut(s)	211, 277, 436, 485, 558, 599, 632, 792
AluI	AGCT	8 cut(s)	211, 277, 436, 485, 558, 599, 632, 792
Alw21I	GWGCWC	2 cut(s)	226, 438
Alw26I	GTCTC	2 cut(s)	36, 79
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	3 cut(s)	214, 380, 694
Ama87I	CYCGRG	2 cut(s)	193, 737
Aor13HI	TCCGGA	1 cut(s)	814
AoxI	GGCC	3 cut(s)	183, 676, 708
ApeKI	GCWGC	3 cut(s)	52, 99, 293
AspS9I	GGNCC	2 cut(s)	183, 709
AsuC2I	CCSGG	3 cut(s)	119, 194, 195
AsuHPI	GGTGA	2 cut(s)	251, 754
AvaI	CYCGRG	2 cut(s)	193, 737
AxyI	CCTNAGG	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	486
Bbv12I	GWGCWC	2 cut(s)	226, 438
BbvI	GCAGC	3 cut(s)	39, 86, 280
BccI	CCATC	3 cut(s)	17, 397, 410
BceAI	ACGGC	3 cut(s)	40, 170, 668
BciT130I	CCWGG	4 cut(s)	566, 680, 719, 801
BciVI	GTATCC	1 cut(s)	646
BcnI	CCSGG	3 cut(s)	119, 194, 195
BcoDI	GTCTC	2 cut(s)	36, 79
BfmI	CTRYAG	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	646
BisI	GCNGC	3 cut(s)	53, 100, 294
BlsI	GCNGC	3 cut(s)	54, 101, 295
Bme1390I	CCNGG	7 cut(s)	119, 194, 195, 566, 680, 719, 801
BmeT110I	CYCGRG	2 cut(s)	193, 737
BmgT120I	GGNCC	2 cut(s)	183, 709
BmrFI	CCNGG	7 cut(s)	119, 194, 195, 566, 680, 719, 801
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	4 cut(s)	167, 466, 567, 700
BmuI	ACTGGG	1 cut(s)	706
BpmI	CTGGAG	1 cut(s)	236
BpuEI	CTTGAG	2 cut(s)	478, 524
BpuMI	CCSGG	3 cut(s)	119, 194, 195
Bsa29I	ATCGAT	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	117, 193, 411
BsaWI	WCCGGW	1 cut(s)	814
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	7 cut(s)	199, 214, 343, 412, 416, 718, 775
Bse1I	ACTGG	2 cut(s)	708, 712
Bse21I	CCTNAGG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	814
BseBI	CCWGG	4 cut(s)	566, 680, 719, 801
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	117, 193, 411
BseGI	GGATG	4 cut(s)	421, 478, 811, 823
BseLI	CCNNNNNNNGG	7 cut(s)	199, 214, 343, 412, 416, 718, 775
BseMII	CTCAG	2 cut(s)	193, 656
BseNI	ACTGG	2 cut(s)	708, 712
BseRI	GAGGAG	3 cut(s)	67, 94, 123
BseXI	GCAGC	3 cut(s)	39, 86, 280
BshFI	GGCC	3 cut(s)	185, 678, 710
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	226, 438
BsiHKCI	CYCGRG	2 cut(s)	193, 737
BsiSI	CCGG	3 cut(s)	119, 194, 815
BslI	CCNNNNNNNGG	7 cut(s)	199, 214, 343, 412, 416, 718, 775
BsmAI	GTCTC	2 cut(s)	36, 79
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	185, 678, 710
BsoBI	CYCGRG	2 cut(s)	193, 737
Bsp1286I	GDGCHC	2 cut(s)	226, 438
Bsp13I	TCCGGA	1 cut(s)	814
Bsp143I	GATC	3 cut(s)	26, 168, 385
BspACI	CCGC	5 cut(s)	18, 81, 97, 350, 540
BspANI	GGCC	3 cut(s)	185, 678, 710
BspCNI	CTCAG	2 cut(s)	192, 655
BspDI	ATCGAT	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	814
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	708, 712
BssECI	CCNNGG	3 cut(s)	117, 193, 411
BssMI	GATC	3 cut(s)	26, 168, 385
BssNI	GRCGYC	1 cut(s)	146
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	4 cut(s)	566, 680, 719, 801
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	2 cut(s)	17, 112
BstACI	GRCGYC	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	534, 630, 777
BstDEI	CTNAG	2 cut(s)	179, 642
BstDSI	CCRYGG	1 cut(s)	411
BstENI	CCTNNNNNAGG	1 cut(s)	773
BstF5I	GGATG	4 cut(s)	421, 478, 811, 823
BstKTI	GATC	3 cut(s)	29, 171, 388
BstMAI	GTCTC	2 cut(s)	36, 79
BstMBI	GATC	3 cut(s)	26, 168, 385
BstMWI	GCNNNNNNNGC	6 cut(s)	320, 548, 652, 697, 772, 781
BstNI	CCWGG	4 cut(s)	566, 680, 719, 801
BstSCI	CCNGG	7 cut(s)	117, 192, 193, 564, 678, 717, 799
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	39, 86, 280
Bsu15I	ATCGAT	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	185, 678, 710
BsuTUI	ATCGAT	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	4 cut(s)	421, 478, 811, 823
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	3 cut(s)	534, 630, 777
CaiI	CAGNNNCTG	3 cut(s)	214, 380, 694
Cfr13I	GGNCC	2 cut(s)	183, 709
Cfr9I	CCCGGG	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	3 cut(s)	199, 469, 647
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	2 cut(s)	179, 642
DpnI	GATC	3 cut(s)	28, 170, 387
DpnII	GATC	3 cut(s)	26, 168, 385
DraI	TTTAAA	1 cut(s)	624
DraIII	CACNNNGTG	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	17, 112
EarI	CTCTTC	2 cut(s)	17, 112
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	3 cut(s)	300, 602, 716
Eco81I	CCTNAGG	1 cut(s)	179
Eco88I	CYCGRG	2 cut(s)	193, 737
EcoICRI	GAGCTC	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	773
EcoRII	CCWGG	4 cut(s)	564, 678, 717, 799
EcoT38I	GRGCYC	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	3 cut(s)	202, 472, 650
FaiI	YATR	6 cut(s)	200, 311, 470, 575, 648, 753
FatI	CATG	3 cut(s)	198, 468, 646
FauI	CCCGC	1 cut(s)	11
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	53, 100, 294
FokI	GGATG	3 cut(s)	428, 485, 798
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	3 cut(s)	53, 100, 294
GluI	GCNGC	3 cut(s)	53, 100, 294
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	185, 678, 710
HapII	CCGG	3 cut(s)	119, 194, 815
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	202, 472, 650
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	2 cut(s)	93, 251
HpaII	CCGG	3 cut(s)	119, 194, 815
HphI	GGTGA	2 cut(s)	251, 754
Hpy166II	GTNNAC	2 cut(s)	60, 745
Hpy188I	TCNGA	6 cut(s)	41, 263, 307, 319, 446, 696
Hpy188III	TCNNGA	4 cut(s)	215, 495, 608, 815
Hpy8I	GTNNAC	2 cut(s)	60, 745
Hpy99I	CGWCG	3 cut(s)	61, 148, 151
HpyAV	CCTTC	3 cut(s)	416, 577, 652
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4IV	ACGT	2 cut(s)	146, 280
HpyCH4V	TGCA	8 cut(s)	158, 296, 331, 374, 397, 536, 755, 766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	320, 548, 652, 697, 772, 781
HpyF3I	CTNAG	2 cut(s)	179, 642
HpySE526I	ACGT	2 cut(s)	146, 280
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	202, 472, 650
Kpn2I	TCCGGA	1 cut(s)	814
Kzo9I	GATC	3 cut(s)	26, 168, 385
LmnI	GCTCC	4 cut(s)	107, 419, 433, 797
Lsp1109I	GCAGC	3 cut(s)	39, 86, 280
LweI	GCATC	4 cut(s)	167, 466, 567, 700
MaeII	ACGT	2 cut(s)	146, 280
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	28, 170, 387
MboI	GATC	3 cut(s)	26, 168, 385
MboII	GAAGA	5 cut(s)	34, 99, 102, 242, 680
MfeI	CAATTG	1 cut(s)	590
MhlI	GDGCHC	2 cut(s)	226, 438
MluCI	AATT	3 cut(s)	590, 618, 683
MroI	TCCGGA	1 cut(s)	814
MseI	TTAA	1 cut(s)	623
MslI	CAYNNNNRTG	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	3 cut(s)	119, 194, 815
MspR9I	CCNGG	7 cut(s)	119, 194, 195, 566, 680, 719, 801
MunI	CAATTG	1 cut(s)	590
MvaI	CCWGG	4 cut(s)	566, 680, 719, 801
MwoI	GCNNNNNNNGC	6 cut(s)	320, 548, 652, 697, 772, 781
NciI	CCSGG	3 cut(s)	119, 194, 195
NdeII	GATC	3 cut(s)	26, 168, 385
NlaIII	CATG	3 cut(s)	202, 472, 650
PaeR7I	CTCGAG	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	93, 251
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	54, 101, 295
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	4 cut(s)	564, 678, 717, 799
PspGI	CCWGG	4 cut(s)	564, 678, 717, 799
PspPI	GGNCC	2 cut(s)	183, 709
PspXI	VCTCGAGB	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	298
PstNI	CAGNNNCTG	3 cut(s)	214, 380, 694
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	816
SacI	GAGCTC	1 cut(s)	438
SalI	GTCGAC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	623
SatI	GCNGC	3 cut(s)	53, 100, 294
Sau3AI	GATC	3 cut(s)	26, 168, 385
Sau96I	GGNCC	2 cut(s)	183, 709
ScrFI	CCNGG	7 cut(s)	119, 194, 195, 566, 680, 719, 801
SduI	GDGCHC	2 cut(s)	226, 438
SfaNI	GCATC	4 cut(s)	167, 466, 567, 700
SfcI	CTRYAG	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	737
SlaI	CTCGAG	1 cut(s)	737
SmaI	CCCGGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	816
SmlI	CTYRAG	3 cut(s)	493, 503, 737
SmoI	CTYRAG	3 cut(s)	493, 503, 737
Sse9I	AATT	3 cut(s)	590, 618, 683
SsiI	CCGC	5 cut(s)	18, 81, 97, 350, 540
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	7 cut(s)	117, 192, 193, 564, 678, 717, 799
TaaI	ACNGT	1 cut(s)	726
TaiI	ACGT	2 cut(s)	149, 283
TaqI	TCGA	4 cut(s)	32, 59, 171, 738
TasI	AATT	3 cut(s)	590, 618, 683
TfiI	GAWTC	2 cut(s)	93, 251
Tru1I	TTAA	1 cut(s)	623
Tru9I	TTAA	1 cut(s)	623
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	3 cut(s)	52, 99, 293
TspDTI	ATGAA	2 cut(s)	663, 800
TspGWI	ACGGA	1 cut(s)	428
TspMI	CCCGGG	1 cut(s)	193
TspRI	CASTG	1 cut(s)	399
Van91I	CCANNNNNTGG	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	773
XhoI	CTCGAG	1 cut(s)	737
XmaI	CCCGGG	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.