Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003445

Physical Location & Seq

Genomic Coordinates Forward (+)

1498712 .. 1501397

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCTGCCGTAGTGTGCGGGAAGAGATCATCGATATTCGAAGAGCAGCTGCCGTCCTCTACTTCTCCTCCTGTTTCCTCTAAGAGAATCCGCTTTTCTTCTTCTTCGTCTCCGGTTCGCTTCACCACGACGTCGTTTGCTGCTTCTTCTTACTCTTCGTCGCCGCTTCTCGACCAGCTCACGGCCGTTTTCCCGGATATGGATAATCAGCTTCTGGAGAAAGCACTTGAAGAATGCGGTGATGATTTGGATTCAGCTATCAGAAGTTTGAATGAGCTGCGCTTGAGTTCTGCTGCAAATAAAGCTAGAGTAGCGTCAGAAGCAAATGCGCAAACCCAGGCACAAGGTGCAGTAGCGGCAAATGGAGAAAGTTCCGGTAACGATGATCTATCAGGTCAAAATAACCTGCCCTCGCAAGGAGCCGACTGGGTGGAGCTCTTTGTTAGAGAGATGATGAGTGCCTCCAATATGGATGATGCTAAAGCTCGTGCCTCAAGAGTGCTTGAGGTCTTGGAGAAATCCATCTGTTCACGTGCATCCACAGAGGCAGCCCAAAGCTTTCACCAGGAAAATATGATGCTGAAGGAACAAATGGAAGCTCTTATTCAGGAAAACACAATCCTGAAGCGAACTGTATCCACTCAGCATGAACGTCAAAAAGAGTGTGAAGATAGAGGGCAGGAACTGCAGCATCTTAAGCAACTGGTGGCCCAGTACCAGGAACAACTGAGAACTCTTGAGGTGAACAACTATGCACTTACGATGCACCTGAAGCAAGCTCAGCAAAGCAGCTCCATTCCAGGGCGGTTTCACCCTGATGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

276

Amino Acids

30.31

Weight (kDa)

5.16

Isoelectric Point (pI)

62.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32440 AT5G32440 AT5G32440
fragaria_vesca	FvH4_1g02660 FvH4_6g29540
malus_domestica	MD02G1026900.v1.1 MD10G1231400.v1.1 MD15G1168400.v1.1 MD17G1213400.v1.1
prunus_persica	Prupe.3G088700_v2.0.a1 Prupe.7G248100_v2.0.a1
pyrus_communis	pycom02g02200 pycom15g15020 pycom17g21830
rosa_chinensis	RchiOBHm_Chr2g0087691 RchiOBHm_Chr2g0135081
rosa_laevigata	RLG00000015893 RLG00000019440
rosa_multiflora	Rmu_sc0000811.1_g000024 Rmu_sc0001385.1_g000013 Rmu_sc0003543.1_g000002 Rmu_sc0025266.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109500 Rroxscaffold_2G00153280
rosa_rugosa	Rorug01G0478500 Rorug02G0322700
rosa_samantha	Rh2AG032400 Rh2AG372000 Rh2BG031500 Rh2BG379500 Rh2CG031900 Rh2CG358600 Rh2DG031900 Rh2DG396100
rosa_wichuraiana	Rw0G013550 Rw2G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
Acc16I	TGCGCA	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	414
AciI	CCGC	6 cut(s)	18, 91, 164, 237, 356, 805
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	3 cut(s)	602, 644, 791
AcvI	CACGTG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	5 cut(s)	181, 199, 416, 718, 801
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	2 cut(s)	230, 271
AjnI	CCWGG	4 cut(s)	336, 564, 717, 799
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	114
AlwNI	CAGNNNCTG	2 cut(s)	214, 685
AoxI	GGCC	2 cut(s)	183, 708
ApeKI	GCWGC	8 cut(s)	46, 49, 140, 277, 293, 548, 688, 789
AspLEI	GCGC	2 cut(s)	282, 331
AspS9I	GGNCC	1 cut(s)	709
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	5 cut(s)	115, 251, 554, 754, 803
AsuII	TTCGAA	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	486
BbrPI	CACGTG	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	8 cut(s)	36, 58, 127, 264, 280, 560, 700, 801
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	3 cut(s)	37, 170, 198
BciT130I	CCWGG	4 cut(s)	338, 566, 719, 801
BciVI	GTATCC	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	306, 826
BfmI	CTRYAG	1 cut(s)	686
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	414
BfuI	GTATCC	1 cut(s)	646
BlpI	GCTNAGC	1 cut(s)	780
Bme1390I	CCNGG	5 cut(s)	194, 338, 566, 719, 801
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	5 cut(s)	194, 338, 566, 719, 801
BmrI	ACTGGG	2 cut(s)	436, 706
BmsI	GCATC	5 cut(s)	466, 545, 567, 700, 753
BmuI	ACTGGG	2 cut(s)	436, 706
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	4 cut(s)	304, 478, 524, 758
BpuMI	CCSGG	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	336, 800
BsaWI	WCCGGW	2 cut(s)	112, 374
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 199, 416, 718, 801
Bse1I	ACTGG	3 cut(s)	431, 708, 712
BseBI	CCWGG	4 cut(s)	338, 566, 719, 801
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	336, 800
BseGI	GGATG	2 cut(s)	478, 536
BseLI	CCNNNNNNNGG	5 cut(s)	181, 199, 416, 718, 801
BseMII	CTCAG	3 cut(s)	656, 719, 794
BseNI	ACTGG	3 cut(s)	431, 708, 712
BseRI	GAGGAG	1 cut(s)	57
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	8 cut(s)	36, 58, 127, 264, 280, 560, 700, 801
BsgI	GTGCAG	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	185, 710
BshVI	ATCGAT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	3 cut(s)	113, 194, 375
BslI	CCNNNNNNNGG	5 cut(s)	181, 199, 416, 718, 801
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	185, 710
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	26, 385
Bsp1720I	GCTNAGC	1 cut(s)	780
BspACI	CCGC	6 cut(s)	18, 91, 164, 237, 356, 805
BspANI	GGCC	2 cut(s)	185, 710
BspCNI	CTCAG	3 cut(s)	655, 720, 793
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	421
BspMAI	CTGCAG	1 cut(s)	690
BspMI	ACCTGC	1 cut(s)	414
BspQI	GCTCTTC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	695
BsrI	ACTGG	3 cut(s)	431, 708, 712
BssECI	CCNNGG	2 cut(s)	336, 800
BssMI	GATC	2 cut(s)	26, 385
BssNI	GRCGYC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	4 cut(s)	338, 566, 719, 801
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	3 cut(s)	17, 36, 160
BstACI	GRCGYC	1 cut(s)	131
BstAFI	CTTAAG	1 cut(s)	695
BstAPI	GCANNNNNTGC	2 cut(s)	347, 685
BstBAI	YACGTR	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	777
BstDEI	CTNAG	4 cut(s)	81, 642, 728, 780
BstF5I	GGATG	2 cut(s)	478, 536
BstHHI	GCGC	2 cut(s)	282, 331
BstKTI	GATC	2 cut(s)	29, 388
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	26, 385
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	9 cut(s)	302, 311, 320, 347, 356, 685, 697, 772, 781
BstNI	CCWGG	4 cut(s)	338, 566, 719, 801
BstSCI	CCNGG	5 cut(s)	192, 336, 564, 717, 799
BstSFI	CTRYAG	1 cut(s)	686
BstV1I	GCAGC	8 cut(s)	36, 58, 127, 264, 280, 560, 700, 801
BstZI	CGGCCG	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	2 cut(s)	185, 710
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	478, 536
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	777
CaiI	CAGNNNCTG	2 cut(s)	214, 685
CfoI	GCGC	2 cut(s)	282, 331
Cfr13I	GGNCC	1 cut(s)	709
ClaI	ATCGAT	1 cut(s)	32
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	1 cut(s)	647
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	4 cut(s)	81, 642, 728, 780
DpnI	GATC	2 cut(s)	28, 387
DpnII	GATC	2 cut(s)	26, 385
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	17, 36, 160
EarI	CTCTTC	3 cut(s)	17, 36, 160
Ecl136II	GAGCTC	1 cut(s)	436
EclXI	CGGCCG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	438
Eco52I	CGGCCG	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	3 cut(s)	602, 644, 791
Eco72I	CACGTG	1 cut(s)	533
EcoICRI	GAGCTC	1 cut(s)	436
EcoRII	CCWGG	4 cut(s)	336, 564, 717, 799
EcoT38I	GRGCYC	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	1 cut(s)	650
FaiI	YATR	5 cut(s)	200, 470, 575, 648, 753
FatI	CATG	1 cut(s)	646
FauI	CCCGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	485, 523
FriOI	GRGCYC	1 cut(s)	438
FspBI	CTAG	2 cut(s)	306, 826
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	2 cut(s)	281, 330
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	185, 710
HapII	CCGG	3 cut(s)	113, 194, 375
HgaI	GACGC	1 cut(s)	303
HhaI	GCGC	2 cut(s)	282, 331
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	650
Hin6I	GCGC	2 cut(s)	280, 329
HinP1I	GCGC	2 cut(s)	280, 329
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	2 cut(s)	87, 251
HpaII	CCGG	3 cut(s)	113, 194, 375
HphI	GGTGA	5 cut(s)	115, 251, 554, 754, 803
Hpy166II	GTNNAC	2 cut(s)	530, 745
Hpy188I	TCNGA	2 cut(s)	263, 319
Hpy188III	TCNNGA	6 cut(s)	170, 215, 495, 608, 622, 737
Hpy8I	GTNNAC	2 cut(s)	530, 745
Hpy99I	CGWCG	3 cut(s)	133, 136, 163
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4IV	ACGT	3 cut(s)	131, 532, 652
HpyCH4V	TGCA	6 cut(s)	296, 350, 536, 688, 755, 766
HpyF10VI	GCNNNNNNNGC	9 cut(s)	302, 311, 320, 347, 356, 685, 697, 772, 781
HpyF3I	CTNAG	4 cut(s)	81, 642, 728, 780
HpySE526I	ACGT	3 cut(s)	131, 532, 652
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	650
HspAI	GCGC	2 cut(s)	280, 329
Kzo9I	GATC	2 cut(s)	26, 385
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	3 cut(s)	419, 433, 797
Lsp1109I	GCAGC	8 cut(s)	36, 58, 127, 264, 280, 560, 700, 801
LweI	GCATC	5 cut(s)	466, 545, 567, 700, 753
MaeI	CTAG	2 cut(s)	306, 826
MaeII	ACGT	3 cut(s)	131, 532, 652
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	28, 387
MboI	GATC	2 cut(s)	26, 385
MboII	GAAGA	9 cut(s)	34, 53, 90, 93, 96, 138, 147, 242, 680
MhlI	GDGCHC	1 cut(s)	438
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	49
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	3 cut(s)	113, 194, 375
MspR9I	CCNGG	5 cut(s)	194, 338, 566, 719, 801
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	4 cut(s)	338, 566, 719, 801
MwoI	GCNNNNNNNGC	9 cut(s)	302, 311, 320, 347, 356, 685, 697, 772, 781
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	2 cut(s)	26, 385
NlaIII	CATG	1 cut(s)	650
NlaIV	GGNNCC	1 cut(s)	421
NsbI	TGCGCA	1 cut(s)	330
NspV	TTCGAA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	87, 251
PfoI	TCCNGGA	1 cut(s)	192
PmaCI	CACGTG	1 cut(s)	533
PmlI	CACGTG	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	4 cut(s)	336, 564, 717, 799
PspCI	CACGTG	1 cut(s)	533
PspGI	CCWGG	4 cut(s)	336, 564, 717, 799
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	709
PstI	CTGCAG	1 cut(s)	690
PstNI	CAGNNNCTG	2 cut(s)	214, 685
PvuII	CAGCTG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	816
SacI	GAGCTC	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	696
Sau3AI	GATC	2 cut(s)	26, 385
Sau96I	GGNCC	1 cut(s)	709
ScrFI	CCNGG	5 cut(s)	194, 338, 566, 719, 801
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	5 cut(s)	466, 545, 567, 700, 753
SfcI	CTRYAG	1 cut(s)	686
SfuI	TTCGAA	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	816
SmlI	CTYRAG	5 cut(s)	283, 493, 503, 695, 737
SmoI	CTYRAG	5 cut(s)	283, 493, 503, 695, 737
SsiI	CCGC	6 cut(s)	18, 91, 164, 237, 356, 805
SspMI	CTAG	2 cut(s)	306, 826
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	5 cut(s)	192, 336, 564, 717, 799
TaaI	ACNGT	1 cut(s)	634
TaiI	ACGT	3 cut(s)	134, 535, 655
TaqI	TCGA	3 cut(s)	32, 39, 171
TauI	GCSGC	2 cut(s)	166, 359
TfiI	GAWTC	2 cut(s)	87, 251
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TseI	GCWGC	8 cut(s)	46, 49, 140, 277, 293, 548, 688, 789
TspDTI	ATGAA	1 cut(s)	663
Vha464I	CTTAAG	1 cut(s)	695
XspI	CTAG	2 cut(s)	306, 826
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.