Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025266.1

Orthogroup ID

OG0003445

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 706

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025266.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 337 bp

atgtctgccgtagtgtgcgggaagagatcatcgatattcgaagagcagctcccctcatcaacgtcatcgtctcctcccgtttcctccaagagaattcgcttttcttcttctccggtacgcttctcccctcccacgacgacgtcgtttggttcgtccttcatcgaccagctcagggccgttttcccggacatggataatcagcttctggagagagcacttgaagaatgcggtaatgatttggattcagctatcagaagtttgaatgagctgcgcttaagttctgctgcaaataaatccggtgtagcatcagaagcaaatgtgcaaccccaggcacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CUE

Protein Analysis

112

Amino Acids

12.04

Weight (kDa)

5.36

Isoelectric Point (pI)

87.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32440 AT5G32440 AT5G32440
fragaria_vesca	FvH4_1g02660 FvH4_6g29540
malus_domestica	MD02G1026900.v1.1 MD10G1231400.v1.1 MD15G1168400.v1.1 MD17G1213400.v1.1
prunus_persica	Prupe.3G088700_v2.0.a1 Prupe.7G248100_v2.0.a1
pyrus_communis	pycom02g02200 pycom15g15020 pycom17g21830
rosa_chinensis	RchiOBHm_Chr2g0087691 RchiOBHm_Chr2g0135081
rosa_laevigata	RLG00000015893 RLG00000019440
rosa_multiflora	Rmu_sc0000811.1_g000024 Rmu_sc0001385.1_g000013 Rmu_sc0003543.1_g000002 Rmu_sc0025266.1_g000001
rosa_roxburghii	Rroxscaffold_2G00109500 Rroxscaffold_2G00153280
rosa_rugosa	Rorug01G0478500 Rorug02G0322700
rosa_samantha	Rh2AG032400 Rh2AG372000 Rh2BG031500 Rh2BG379500 Rh2CG031900 Rh2CG358600 Rh2DG031900 Rh2DG396100
rosa_wichuraiana	Rw0G013550 Rw2G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
AciI	CCGC	2 cut(s)	18, 228
AcsI	RAATTY	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	172, 190
AflII	CTTAAG	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	221, 262
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	5 cut(s)	49, 169, 202, 248, 268
AluI	AGCT	5 cut(s)	49, 169, 202, 248, 268
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	3 cut(s)	46, 268, 284
ApoI	RAATTY	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	3 cut(s)	58, 255, 271
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	274
BisI	GCNGC	3 cut(s)	47, 269, 285
BlsI	GCNGC	3 cut(s)	48, 270, 286
Bme1390I	CCNGG	2 cut(s)	185, 329
BmgT120I	GGNCC	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	185, 329
BmsI	GCATC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	112, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 190
BseBI	CCWGG	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	172, 190
BseMII	CTCAG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	58, 255, 271
BshFI	GGCC	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	3 cut(s)	113, 185, 297
BslI	CCNNNNNNNGG	2 cut(s)	172, 190
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	2 cut(s)	18, 228
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	183
BspDI	ATCGAT	1 cut(s)	32
BspQI	GCTCTTC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	1 cut(s)	26
BssNI	GRCGYC	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	329
Bst6I	CTCTTC	2 cut(s)	17, 36
BstACI	GRCGYC	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	183, 327
BstV1I	GCAGC	3 cut(s)	58, 255, 271
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	32
CaiI	CAGNNNCTG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	174
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	49, 169, 176, 202, 248, 268
CviKI_1	RGCY	6 cut(s)	49, 169, 176, 202, 248, 268
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eam1104I	CTCTTC	2 cut(s)	17, 36
EarI	CTCTTC	2 cut(s)	17, 36
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	193
FaiI	YATR	1 cut(s)	191
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	11
Fnu4HI	GCNGC	3 cut(s)	47, 269, 285
Fsp4HI	GCNGC	3 cut(s)	47, 269, 285
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	3 cut(s)	47, 269, 285
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	3 cut(s)	113, 185, 297
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	3 cut(s)	113, 185, 297
Hpy188I	TCNGA	2 cut(s)	254, 310
Hpy188III	TCNNGA	1 cut(s)	206
Hpy99I	CGWCG	3 cut(s)	139, 142, 145
HpyAV	CCTTC	1 cut(s)	166
HpyCH4IV	ACGT	2 cut(s)	62, 140
HpyCH4V	TGCA	2 cut(s)	287, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	2 cut(s)	62, 140
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	26
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	7 cut(s)	126, 157, 179, 191, 198, 310, 314
Lsp1109I	GCAGC	3 cut(s)	58, 255, 271
LweI	GCATC	1 cut(s)	314
MaeII	ACGT	2 cut(s)	62, 140
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	5 cut(s)	34, 53, 96, 99, 233
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	93
MnlI	CCTC	4 cut(s)	64, 84, 94, 138
MseI	TTAA	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	274
MspI	CCGG	3 cut(s)	113, 185, 297
MspR9I	CCNGG	2 cut(s)	185, 329
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	311
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	2 cut(s)	140, 149
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	242
PflFI	GACNNNGTC	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	48, 270, 286
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	3 cut(s)	47, 269, 285
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	185, 329
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	7 cut(s)	51, 65, 143, 171, 204, 250, 270
SfaNI	GCATC	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	18, 228
StyD4I	CCNGG	2 cut(s)	183, 327
TaiI	ACGT	2 cut(s)	65, 143
TaqI	TCGA	3 cut(s)	32, 39, 162
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseI	GCWGC	3 cut(s)	46, 268, 284
TspDTI	ATGAA	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.