Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Reverse (-)

12440488 .. 12442289

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G32670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGTAGTGATGGAGCAGAGGATATTACGATCATGATTAACTCTTCCTCTGCTAAATTTGCTGGATTTCAATACGGTAGCTCGTTTCTTTCAAGTTTTGGAAGTGGTGTTTGTGAGAGGTCACTCACTTCTGCAACTGTTGGCCCCAATGGTCCGTTCTCTTCAAGCTTTGTGAGAGCCAAAATGCTGTCAAGCGGGTTTCTTATCCGTCCTTGTGATGGTGGTGGTTCCATTATTCACATCGTTGATCATGTTGACTTGGATGTCTCAAGTGTTCCTAAAGTCCTCAGGCCTCTTTATGAGTCTTCCAAAATCCTAGAAGACTCGACCTATTGGAGGGATTCAGAAGAATTTCCTGAGTTTAGATCAATTGACTTAGGGGGATTTGGAGAGATTTTAGTAGACTTTAAGCTACAAAAACAAAGCTCTAGTGATTTGGTGAGATTTATCATTAAACTTTGTGACATTGGTGTTGTGTATGATTATGTTTTTTCTCGTCACCTCCAAAAGCTCAAGTCTCGTGCCAGCTTGATCATATGGTTGCCATTATCCCATGACATTAATCTCAAGATTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009799 GO:0009855 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080060 GO:0080090 GO:0090421 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

192

Amino Acids

21.19

Weight (kDa)

5.78

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	37 - 105	1.9e-15	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	56, 350
AfiI	CCNNNNNNNGG	2 cut(s)	218, 336
AgsI	TTSAA	3 cut(s)	71, 93, 165
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	6 cut(s)	81, 168, 412, 426, 511, 528
AluI	AGCT	6 cut(s)	81, 168, 412, 426, 511, 528
Alw26I	GTCTC	2 cut(s)	271, 522
AoxI	GGCC	2 cut(s)	142, 290
ApoI	RAATTY	2 cut(s)	56, 350
AseI	ATTAAT	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	143, 152
AsuHPI	GGTGA	2 cut(s)	451, 491
AvaII	GGWCC	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	287
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	297, 327
BccI	CCATC	2 cut(s)	5, 212
BclI	TGATCA	2 cut(s)	247, 531
BcoDI	GTCTC	2 cut(s)	271, 522
BfaI	CTAG	2 cut(s)	317, 429
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	143, 152
BmiI	GGNNCC	2 cut(s)	145, 229
BpiI	GAAGAC	2 cut(s)	297, 327
BpuEI	CTTGAG	3 cut(s)	253, 497, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 336
Bse21I	CCTNAGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	218, 336
BseMII	CTCAG	2 cut(s)	301, 348
BshFI	GGCC	2 cut(s)	144, 292
BslI	CCNNNNNNNGG	2 cut(s)	218, 336
BsmAI	GTCTC	2 cut(s)	271, 522
BsnI	GGCC	2 cut(s)	144, 292
Bsp143I	GATC	4 cut(s)	30, 247, 365, 531
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	144, 292
BspCNI	CTCAG	2 cut(s)	300, 349
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	145, 229
BssMI	GATC	4 cut(s)	30, 247, 365, 531
BssSI	CACGAG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	77, 139
Bst6I	CTCTTC	2 cut(s)	49, 166
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	3 cut(s)	287, 357, 376
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	4 cut(s)	33, 250, 368, 534
BstMAI	GTCTC	2 cut(s)	271, 522
BstMBI	GATC	4 cut(s)	30, 247, 365, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	297, 327
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	144, 292
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	526
CciI	TCATGA	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	143, 152
CviAII	CATG	3 cut(s)	34, 251, 554
CviJI	RGCY	9 cut(s)	81, 144, 168, 179, 292, 412, 426, 511, 528
CviKI_1	RGCY	9 cut(s)	81, 144, 168, 179, 292, 412, 426, 511, 528
DdeI	CTNAG	3 cut(s)	287, 357, 376
DpnI	GATC	4 cut(s)	32, 249, 367, 533
DpnII	GATC	4 cut(s)	30, 247, 365, 531
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	2 cut(s)	49, 166
EarI	CTCTTC	2 cut(s)	49, 166
Eco147I	AGGCCT	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	334
FaeI	CATG	3 cut(s)	37, 254, 557
FaiI	YATR	8 cut(s)	35, 252, 300, 480, 486, 536, 538, 555
FatI	CATG	3 cut(s)	33, 250, 553
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	536
FbaI	TGATCA	2 cut(s)	247, 531
FblI	GTMKAC	1 cut(s)	402
FokI	GGATG	1 cut(s)	275
FspBI	CTAG	2 cut(s)	317, 429
HaeIII	GGCC	2 cut(s)	144, 292
Hin1II	CATG	3 cut(s)	37, 254, 557
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	4 cut(s)	302, 323, 341, 571
HphI	GGTGA	2 cut(s)	451, 491
Hpy166II	GTNNAC	2 cut(s)	256, 403
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	3 cut(s)	34, 356, 568
Hpy8I	GTNNAC	2 cut(s)	256, 403
HpyCH4III	ACNGT	2 cut(s)	77, 139
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	3 cut(s)	287, 357, 376
Hsp92II	CATG	3 cut(s)	37, 254, 557
Ksp22I	TGATCA	2 cut(s)	247, 531
Kzo9I	GATC	4 cut(s)	30, 247, 365, 531
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	4 cut(s)	48, 274, 369, 538
MaeI	CTAG	2 cut(s)	317, 429
MaeIII	GTNAC	3 cut(s)	120, 461, 497
MalI	GATC	4 cut(s)	32, 249, 367, 533
MboI	GATC	4 cut(s)	30, 247, 365, 531
MboII	GAAGA	5 cut(s)	36, 153, 297, 332, 359
MfeI	CAATTG	1 cut(s)	369
MluCI	AATT	3 cut(s)	56, 350, 369
MlyI	GAGTC	2 cut(s)	311, 317
MnlI	CCTC	7 cut(s)	13, 58, 111, 296, 303, 330, 512
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	4 cut(s)	39, 408, 453, 561
MunI	CAATTG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeI	CATATG	1 cut(s)	536
NdeII	GATC	4 cut(s)	30, 247, 365, 531
NlaIII	CATG	3 cut(s)	37, 254, 557
NlaIV	GGNNCC	2 cut(s)	145, 229
NmuCI	GTSAC	3 cut(s)	120, 461, 497
PagI	TCATGA	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	341, 571
PleI	GAGTC	2 cut(s)	310, 317
PpsI	GAGTC	2 cut(s)	310, 317
PshBI	ATTAAT	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	145, 229
PspPI	GGNCC	2 cut(s)	143, 152
SaqAI	TTAA	4 cut(s)	39, 408, 453, 561
Sau3AI	GATC	4 cut(s)	30, 247, 365, 531
Sau96I	GGNCC	2 cut(s)	143, 152
SchI	GAGTC	2 cut(s)	311, 317
SetI	ASST	9 cut(s)	83, 122, 170, 332, 414, 428, 504, 513, 530
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	3 cut(s)	268, 512, 566
SmoI	CTYRAG	3 cut(s)	268, 512, 566
Sse9I	AATT	3 cut(s)	56, 350, 369
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	2 cut(s)	317, 429
StuI	AGGCCT	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	77, 139
TaqI	TCGA	1 cut(s)	326
TasI	AATT	3 cut(s)	56, 350, 369
TfiI	GAWTC	2 cut(s)	341, 571
Tru1I	TTAA	4 cut(s)	39, 408, 453, 561
Tru9I	TTAA	4 cut(s)	39, 408, 453, 561
TseFI	GTSAC	3 cut(s)	120, 461, 497
Tsp45I	GTSAC	3 cut(s)	120, 461, 497
TspGWI	ACGGA	2 cut(s)	144, 197
VpaK11BI	GGWCC	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	561
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	2 cut(s)	56, 350
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	2 cut(s)	317, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.