Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

29194944 .. 29197153

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTCGCTCTCAAGTTTGACCAGTACCAGGAGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCCAAGATCTACCGCATGAAGCTTTGGCACACCAATGATGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGGTGAAGAAGGTGAAGAAGAGCAATGGCCAAATTGTTGCCATCAATGAGATTTTGGAGAAGAAACCTACTGTTGTTGAGAACTACAGTATTTGGTTGAGGGTATCAAAGCAGGACAGGGTATCACAACATGTACAAGGAGTACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

97

Amino Acids

11.45

Weight (kDa)

9.95

Isoelectric Point (pI)

20.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	3 cut(s)	26, 279, 288
AfiI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 145
AflIII	ACRYGT	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
AoxI	GGCC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	160, 169
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	46
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	229
BglII	AGATCT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	51, 60
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 145
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	51, 60
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 145
BseMI	GCAATG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	174
BslI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 145
BsnI	GGCC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	51, 60
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	217, 233, 291
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	25, 278, 287
CviAII	CATG	2 cut(s)	85, 275
CviJI	RGCY	3 cut(s)	44, 91, 174
CviKI_1	RGCY	3 cut(s)	44, 91, 174
CviQI	GTAC	3 cut(s)	25, 278, 287
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	88, 278
FaiI	YATR	2 cut(s)	86, 276
FatI	CATG	2 cut(s)	84, 274
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	46
GlaI	GCGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	88, 278
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	89
HphI	GGTGA	2 cut(s)	160, 169
Hpy188III	TCNNGA	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	139, 148
HpyCH4III	ACNGT	3 cut(s)	217, 233, 291
Hsp92II	CATG	2 cut(s)	88, 278
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	158
LpnPI	CCDG	7 cut(s)	14, 35, 41, 115, 152, 242, 247
LweI	GCATC	1 cut(s)	46
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	5 cut(s)	154, 163, 172, 175, 217
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	174
MnlI	CCTC	3 cut(s)	25, 55, 237
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	114
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	88, 278
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	278
PciI	ACATGT	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	158
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
PscI	ACATGT	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	3 cut(s)	26, 279, 288
RsaNI	GTAC	3 cut(s)	25, 278, 287
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	5 cut(s)	36, 93, 150, 159, 214
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	217, 233, 291
TasI	AATT	1 cut(s)	177
TatI	WGTACW	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	101
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.