Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

11738472 .. 11740692

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1149400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAACTTTGAAGGCCCATACACACCAACCAGAGGAATTAGGGTTTTTAAACCTTCGCTTGTTATAGAGTTGTGGAAGACAAACTGCTCTTGTAGCCAGCAGCCGTCAGCAGTCAGCAGCCAGAGCAGCCAGAGCAGCGGCGTCTCTCTCCCTCATCGCAAAAAAATGGGTGTTTTCAGGTTTCACCAGTACCAGGTGGTGGGGAGAGCCCTCCCGACTGAGAAGGATGAGCATCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTCTTGAGGAAGTTGAAGAAAGTGAAGAAAAGCAATGGACAAGTTTTGGCCATCAATGAGATTTTTGAGAAATATCCAACTACCATCAAGAACTATGGAATCTGGCTTCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAGTATCGAGACACAACTCTCAATGGTGCTGTAGAAGCCATGTACACTGAGTTGGCATCTCGTCACAGGGTGAGGTTTCCGTGCATCCAAATCATCAAGACAGCTACCATCCCAGCAAAACTCTGCAAGAGGGAGAGCACCAAGCAGTTCCATAACTCCAAGATCAAGTTCCCGTTGGTGTTCAGGAAGGTTAGGCCCCCATCCAGGAAGCTCAAGACGACATACAAGGCATCCAGGCCCAACCTCTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010154 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0022414 GO:0022625 GO:0022626 GO:0030054 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040007 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044706 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0061458 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

234

Amino Acids

27.38

Weight (kDa)

10.39

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	62 - 183	4.6e-23	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	199, 294
AciI	CCGC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	517
AfaI	GTAC	4 cut(s)	191, 299, 443, 491
AfiI	CCNNNNNNNGG	5 cut(s)	32, 193, 199, 294, 651
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	11, 316
AjnI	CCWGG	3 cut(s)	192, 650, 680
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 599, 631
AluBI	AGCT	3 cut(s)	256, 551, 658
AluI	AGCT	3 cut(s)	256, 551, 658
Alw21I	GWGCWC	1 cut(s)	587
Alw26I	GTCTC	2 cut(s)	148, 450
AoxI	GGCC	5 cut(s)	13, 261, 348, 641, 683
ApeKI	GCWGC	4 cut(s)	100, 117, 126, 135
AspS9I	GGNCC	5 cut(s)	14, 261, 274, 642, 684
AsuHPI	GGTGA	2 cut(s)	176, 529
AvaII	GGWCC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	4 cut(s)	112, 129, 138, 147
BccI	CCATC	4 cut(s)	359, 392, 563, 655
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	3 cut(s)	194, 652, 682
BcoDI	GTCTC	2 cut(s)	148, 450
BfmI	CTRYAG	1 cut(s)	477
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	5 cut(s)	101, 118, 127, 136, 139
BlsI	GCNGC	5 cut(s)	102, 119, 128, 137, 140
Bme1390I	CCNGG	3 cut(s)	194, 652, 682
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	5 cut(s)	14, 261, 274, 642, 684
BmiI	GGNNCC	1 cut(s)	644
BmrFI	CCNGG	3 cut(s)	194, 652, 682
BmsI	GCATC	4 cut(s)	241, 512, 540, 686
BpiI	GAAGAC	1 cut(s)	83
BpuEI	CTTGAG	2 cut(s)	325, 644
BsaBI	GATNNNNATC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 193, 199, 294, 651
Bse1I	ACTGG	2 cut(s)	187, 430
Bse3DI	GCAATG	1 cut(s)	340
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	194, 652, 682
BseGI	GGATG	7 cut(s)	232, 232, 255, 531, 555, 647, 677
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	5 cut(s)	32, 193, 199, 294, 651
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	210, 486
BseNI	ACTGG	2 cut(s)	187, 430
BseXI	GCAGC	4 cut(s)	112, 129, 138, 147
BseYI	CCCAGC	1 cut(s)	559
BshFI	GGCC	5 cut(s)	15, 263, 350, 643, 685
BsiHKAI	GWGCWC	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	5 cut(s)	32, 193, 199, 294, 651
BsmAI	GTCTC	2 cut(s)	148, 450
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	5 cut(s)	15, 263, 350, 643, 685
Bsp1286I	GDGCHC	2 cut(s)	211, 587
Bsp1407I	TGTACA	2 cut(s)	441, 489
Bsp143I	GATC	2 cut(s)	240, 609
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	5 cut(s)	15, 263, 350, 643, 685
BspCNI	CTCAG	2 cut(s)	211, 487
BspLI	GGNNCC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	340
BsrGI	TGTACA	2 cut(s)	441, 489
BsrI	ACTGG	2 cut(s)	187, 430
BssMI	GATC	2 cut(s)	240, 609
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	3 cut(s)	194, 652, 682
BstACI	GRCGYC	1 cut(s)	141
BstAUI	TGTACA	2 cut(s)	441, 489
BstC8I	GCNNGC	1 cut(s)	98
BstDEI	CTNAG	2 cut(s)	219, 495
BstF5I	GGATG	7 cut(s)	232, 232, 255, 531, 555, 647, 677
BstKTI	GATC	2 cut(s)	243, 612
BstMAI	GTCTC	2 cut(s)	148, 450
BstMBI	GATC	2 cut(s)	240, 609
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 123, 126, 132, 135, 482
BstNI	CCWGG	3 cut(s)	194, 652, 682
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	3 cut(s)	192, 650, 680
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	112, 129, 138, 147
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	5 cut(s)	15, 263, 350, 643, 685
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	7 cut(s)	232, 232, 255, 531, 555, 647, 677
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	98
Cfr13I	GGNCC	5 cut(s)	14, 261, 274, 642, 684
CseI	GACGC	1 cut(s)	130
CsiI	ACCWGGT	1 cut(s)	192
Csp6I	GTAC	4 cut(s)	190, 298, 442, 490
CviAII	CATG	2 cut(s)	439, 487
CviQI	GTAC	4 cut(s)	190, 298, 442, 490
DdeI	CTNAG	2 cut(s)	219, 495
DpnI	GATC	2 cut(s)	242, 611
DpnII	GATC	2 cut(s)	240, 609
DraI	TTTAAA	1 cut(s)	49
DraIII	CACNNNGTG	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	642
EcoRII	CCWGG	3 cut(s)	192, 650, 680
EcoRV	GATATC	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	2 cut(s)	442, 490
FaiI	YATR	8 cut(s)	19, 65, 396, 440, 488, 600, 670, 698
FatI	CATG	2 cut(s)	438, 486
Fnu4HI	GCNGC	5 cut(s)	101, 118, 127, 136, 139
FokI	GGATG	7 cut(s)	219, 239, 262, 518, 542, 634, 664
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	5 cut(s)	101, 118, 127, 136, 139
GluI	GCNGC	5 cut(s)	101, 118, 127, 136, 139
GsaI	CCCAGC	1 cut(s)	563
HaeIII	GGCC	5 cut(s)	15, 263, 350, 643, 685
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	442, 490
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	176, 529
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	7 cut(s)	214, 304, 388, 455, 544, 631, 661
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	4 cut(s)	5, 63, 217, 628
HpyCH4V	TGCA	2 cut(s)	531, 573
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 123, 126, 132, 135, 482
HpyF3I	CTNAG	2 cut(s)	219, 495
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	442, 490
Kzo9I	GATC	2 cut(s)	240, 609
Lsp1109I	GCAGC	4 cut(s)	112, 129, 138, 147
LweI	GCATC	4 cut(s)	241, 512, 540, 686
MabI	ACCWGGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	2 cut(s)	242, 611
MboI	GATC	2 cut(s)	240, 609
MboII	GAAGA	3 cut(s)	88, 328, 337
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	2 cut(s)	211, 587
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	1 cut(s)	36
MluNI	TGGCCA	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	26, 162, 221, 265, 300, 513, 570, 701
Mox20I	TGGCCA	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	3 cut(s)	194, 652, 682
MvaI	CCWGG	3 cut(s)	194, 652, 682
MwoI	GCNNNNNNNGC	6 cut(s)	93, 123, 126, 132, 135, 482
NdeII	GATC	2 cut(s)	240, 609
NlaIII	CATG	2 cut(s)	442, 490
NlaIV	GGNNCC	1 cut(s)	644
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	1 cut(s)	442
PciI	ACATGT	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	399
PflMI	CCANNNNNTGG	2 cut(s)	199, 294
PfoI	TCCNGGA	1 cut(s)	650
PkrI	GCNGC	5 cut(s)	102, 119, 128, 137, 140
PscI	ACATGT	1 cut(s)	438
Psp6I	CCWGG	3 cut(s)	192, 650, 680
PspFI	CCCAGC	1 cut(s)	559
PspGI	CCWGG	3 cut(s)	192, 650, 680
PspN4I	GGNNCC	1 cut(s)	644
PspPI	GGNCC	5 cut(s)	14, 261, 274, 642, 684
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	4 cut(s)	191, 299, 443, 491
RsaNI	GTAC	4 cut(s)	190, 298, 442, 490
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	5 cut(s)	101, 118, 127, 136, 139
Sau3AI	GATC	2 cut(s)	240, 609
Sau96I	GGNCC	5 cut(s)	14, 261, 274, 642, 684
ScrFI	CCNGG	3 cut(s)	194, 652, 682
SduI	GDGCHC	2 cut(s)	211, 587
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	4 cut(s)	241, 512, 540, 686
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	304, 659
SmoI	CTYRAG	2 cut(s)	304, 659
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	138
StyD4I	CCNGG	3 cut(s)	192, 650, 680
TaqI	TCGA	2 cut(s)	409, 454
TasI	AATT	1 cut(s)	36
TatI	WGTACW	2 cut(s)	441, 489
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	4 cut(s)	100, 117, 126, 135
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	17, 266
TspGWI	ACGGA	2 cut(s)	266, 516
TspRI	CASTG	1 cut(s)	499
Van91I	CCANNNNNTGG	2 cut(s)	199, 294
VpaK11BI	GGWCC	1 cut(s)	274
XceI	RCATGY	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.