Rh6CG232200

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004293
Physical Location & Seq
Forward (+)
39450657 .. 39450944
288 bp
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UTR
Exon/CDS
Intron
Rh6CG232200.1

Sequence Viewer

Length: 288 bp
ATGTACAAGGAGTACCATAACACCACTCTGAATGGGGCTGTGGATCAGATGTGCACTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCGAGACTGCCACGATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGAACTCTAATAATGCATTTATGTCAGATTATGTTCGAATCCTCATTTTAGGTATGCATTGGATTAGAAACAGAACAACATTGCCGGTTAAGAAATGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18A

Protein Analysis

95

Amino Acids

11.13

Weight (kDa)

9.83

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18A PF01775 1 - 37 2.4e-11 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 51, 112
AfaI GTAC 3 cut(s) 5, 14, 148
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 2 cut(s) 125, 130
AluI AGCT 2 cut(s) 125, 130
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 2 cut(s) 51, 112
ApaLI GTGCAC 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 101
BlpI GCTNAGC 1 cut(s) 126
BmsI GCATC 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 220
Bse118I RCCGGY 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 263
BseGI GGATG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 43, 117, 171
Bsp1720I GCTNAGC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 49
BspPI GGATC 2 cut(s) 51, 112
BspT104I TTCGAA 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 268
BssMI GATC 3 cut(s) 43, 117, 171
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 57, 126
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 3 cut(s) 46, 120, 174
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 43, 117, 171
BstSLI GKGCMC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 268
Csp6I GTAC 3 cut(s) 4, 13, 147
CviJI RGCY 4 cut(s) 38, 65, 125, 130
CviKI_1 RGCY 4 cut(s) 38, 65, 125, 130
CviQI GTAC 3 cut(s) 4, 13, 147
DdeI CTNAG 2 cut(s) 57, 126
DpnI GATC 3 cut(s) 45, 119, 173
DpnII GATC 3 cut(s) 43, 117, 171
EcoT22I ATGCAT 2 cut(s) 202, 243
FaiI YATR 4 cut(s) 18, 206, 216, 239
FokI GGATG 1 cut(s) 80
GsaI CCCAGC 1 cut(s) 125
HapII CCGG 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 3 cut(s) 30, 48, 211
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 54
HpyCH4V TGCA 5 cut(s) 54, 93, 135, 200, 241
HpyF3I CTNAG 2 cut(s) 57, 126
Kzo9I GATC 3 cut(s) 43, 117, 171
LpnPI CCDG 4 cut(s) 61, 67, 135, 282
LweI GCATC 1 cut(s) 102
MalI GATC 3 cut(s) 45, 119, 173
MboI GATC 3 cut(s) 43, 117, 171
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 155, 163
MnlI CCTC 2 cut(s) 132, 236
Mph1103I ATGCAT 2 cut(s) 202, 243
MseI TTAA 2 cut(s) 273, 286
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 269
NdeII GATC 3 cut(s) 43, 117, 171
NsiI ATGCAT 2 cut(s) 202, 243
NspV TTCGAA 1 cut(s) 220
PfeI GAWTC 1 cut(s) 222
PspFI CCCAGC 1 cut(s) 121
RsaI GTAC 3 cut(s) 5, 14, 148
RsaNI GTAC 3 cut(s) 4, 13, 147
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 2 cut(s) 273, 286
Sau3AI GATC 3 cut(s) 43, 117, 171
SduI GDGCHC 1 cut(s) 56
SetI ASST 4 cut(s) 86, 127, 132, 238
SfaNI GCATC 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 2 cut(s) 155, 163
TaqI TCGA 2 cut(s) 105, 220
TasI AATT 2 cut(s) 155, 163
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 273, 286
Tru9I TTAA 2 cut(s) 273, 286
TscAI CASTG 1 cut(s) 61
TspRI CASTG 1 cut(s) 61
VneI GTGCAC 1 cut(s) 52
Zsp2I ATGCAT 2 cut(s) 202, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.