Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Reverse (-)

53157758 .. 53158858

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG275900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTCGCTCTCAAGTTTCACCAGTACCAGGTGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCTAAGATCTACCGCATGAAGCTTTGGCACACCAATGATGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGGTGAAGAAGAGCAATGGCCAAATTGTTGCCATCAATGAGATTTTGGAGAAGAAACCTACTGTTGTTGAGAACTACGGTATTTGGTTGTGGTATCAAAGCAGGACAGGGTATCACAACATGTACAAGGAGTACCGTGACATCACTCTGAATGGGGCTGTGGATCAGATGTGCACTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACTGCCACGATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGAACTCTGATGATGCATTTATGTCAGATTATGTTCGAATCCTCATTTTAGGTATGCATTGGATTAGAAACAGAACAACATTGCCGGTTAAGAAATGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

183

Amino Acids

21.69

Weight (kDa)

9.9

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	7 - 125	8.1e-21	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	2 cut(s)	315, 376
AcoI	YGGCCR	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	4 cut(s)	26, 269, 278, 412
AfiI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 145
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	91, 389, 394
AluI	AGCT	3 cut(s)	91, 389, 394
Alw21I	GWGCWC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	316
AlwI	GGATC	2 cut(s)	315, 376
AoxI	GGCC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	11, 160
AsuII	TTCGAA	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	320
BccI	CCATC	2 cut(s)	185, 319
BciT130I	CCWGG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	3 cut(s)	46, 366, 451
Bpu1102I	GCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	51, 60
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 145
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	2 cut(s)	166, 527
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	51, 60
BseGI	GGATG	2 cut(s)	61, 357
BseLI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 145
BseMI	GCAATG	2 cut(s)	166, 527
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	533
BslI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 145
BsnI	GGCC	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	46, 320
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	75, 307, 381, 435
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	114
BspPI	GGATC	2 cut(s)	315, 376
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	484
BsrDI	GCAATG	2 cut(s)	166, 527
BsrFI	RCCGGY	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	2 cut(s)	51, 60
BssMI	GATC	4 cut(s)	75, 307, 381, 435
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	208, 224, 281
Bst6I	CTCTTC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	484
BstDEI	CTNAG	3 cut(s)	72, 321, 390
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	61, 357
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	78, 310, 384, 438
BstMBI	GATC	4 cut(s)	75, 307, 381, 435
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	61, 357
BtsIMutI	CAGTG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	532
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	4 cut(s)	25, 268, 277, 411
CviAII	CATG	2 cut(s)	85, 265
CviJI	RGCY	7 cut(s)	44, 91, 165, 302, 329, 389, 394
CviKI_1	RGCY	7 cut(s)	44, 91, 165, 302, 329, 389, 394
CviQI	GTAC	4 cut(s)	25, 268, 277, 411
DdeI	CTNAG	3 cut(s)	72, 321, 390
DpnI	GATC	4 cut(s)	77, 309, 383, 437
DpnII	GATC	4 cut(s)	75, 307, 381, 435
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	2 cut(s)	466, 507
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	88, 268
FaiI	YATR	5 cut(s)	86, 266, 470, 480, 503
FatI	CATG	2 cut(s)	84, 264
FokI	GGATG	2 cut(s)	68, 344
FriOI	GRGCYC	1 cut(s)	46
GlaI	GCGC	1 cut(s)	115
GsaI	CCCAGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	88, 268
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	2 cut(s)	89, 392
HinfI	GANTC	1 cut(s)	486
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	2 cut(s)	11, 160
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	4 cut(s)	294, 312, 457, 475
Hpy188III	TCNNGA	2 cut(s)	139, 370
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	3 cut(s)	208, 224, 281
HpyCH4V	TGCA	5 cut(s)	318, 357, 399, 464, 505
HpyF3I	CTNAG	3 cut(s)	72, 321, 390
Hsp92II	CATG	2 cut(s)	88, 268
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	75, 307, 381, 435
LguI	GCTCTTC	1 cut(s)	149
LweI	GCATC	3 cut(s)	46, 366, 451
MabI	ACCWGGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	77, 309, 383, 437
MboI	GATC	4 cut(s)	75, 307, 381, 435
MboII	GAAGA	4 cut(s)	154, 163, 166, 208
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	46, 320
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	3 cut(s)	168, 419, 427
MluNI	TGGCCA	1 cut(s)	165
MnlI	CCTC	3 cut(s)	55, 396, 500
Mox20I	TGGCCA	1 cut(s)	165
Mph1103I	ATGCAT	2 cut(s)	466, 507
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	2 cut(s)	537, 550
MslI	CAYNNNNRTG	2 cut(s)	102, 323
Msp20I	TGGCCA	1 cut(s)	165
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	114
NdeII	GATC	4 cut(s)	75, 307, 381, 435
NlaIII	CATG	2 cut(s)	88, 268
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	2 cut(s)	466, 507
NspI	RCATGY	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	484
PciI	ACATGT	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	486
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
PscI	ACATGT	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	4 cut(s)	26, 269, 278, 412
RsaNI	GTAC	4 cut(s)	25, 268, 277, 411
RseI	CAYNNNNRTG	2 cut(s)	102, 323
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	537, 550
Sau3AI	GATC	4 cut(s)	75, 307, 381, 435
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	46, 320
SetI	ASST	8 cut(s)	33, 93, 150, 205, 350, 391, 396, 502
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	3 cut(s)	46, 366, 451
SfuI	TTCGAA	1 cut(s)	484
SmiMI	CAYNNNNRTG	2 cut(s)	102, 323
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	168, 419, 427
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	208, 224, 281
TaqI	TCGA	1 cut(s)	484
TasI	AATT	3 cut(s)	168, 419, 427
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	2 cut(s)	537, 550
Tru9I	TTAA	2 cut(s)	537, 550
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
VneI	GTGCAC	1 cut(s)	316
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	268
Zsp2I	ATGCAT	2 cut(s)	466, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.