Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Reverse (-)

31432723 .. 31433650

Gene Structure 928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAAGCTTTGGCACACCAATGATGTTCGCCCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGGTGGCAATGGCCAAATTGTTGCCATCAATGAGGTTTTCTGCGGAATTGTACTATTTTGTAATCATTTTGGAGAAGAAACCTACTGTTGTTGAGAACTACGGTATTTGGTTGAGGTATCAAAGCAGGACAGGGTATCACAACATGTACAAGGAGTACCGTGACACCAGTCTGAATGGGGCTGTGGATCAGATGTGCACTGAGATGGCTTCTCGCCATAGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACTGCCACGATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGAACTCTGATGATGCATTTATGTCGGATTATGTTCGAATCCTCATTTTAGGTATGCATTGGATTAGAAACAGAACAACATTGCCGGTTAAGAAATGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

163

Amino Acids

19.45

Weight (kDa)

9.95

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	55 - 105	9.2e-17	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	45
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	255, 316
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	4 cut(s)	113, 209, 218, 352
AfiI	CCNNNNNNNGG	2 cut(s)	45, 61
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	7, 329, 334
AluI	AGCT	3 cut(s)	7, 329, 334
Alw21I	GWGCWC	1 cut(s)	260
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	255, 316
AoxI	GGCC	1 cut(s)	72
ApaLI	GTGCAC	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	260
BccI	CCATC	2 cut(s)	94, 259
BcgI	CGANNNNNNTGC	2 cut(s)	393, 427
BlpI	GCTNAGC	1 cut(s)	330
BmsI	GCATC	2 cut(s)	306, 391
BoxI	GACNNNNGTC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 61
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	2 cut(s)	75, 467
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	45, 61
BseMI	GCAATG	2 cut(s)	75, 467
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	260
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	45, 61
BsnI	GGCC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	247, 321, 375
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	253
BspPI	GGATC	2 cut(s)	255, 316
BspT104I	TTCGAA	1 cut(s)	424
BsrDI	GCAATG	2 cut(s)	75, 467
BsrFI	RCCGGY	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	472
BssMI	GATC	3 cut(s)	247, 321, 375
Bst4CI	ACNGT	3 cut(s)	148, 164, 221
BstAUI	TGTACA	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	261, 330
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	3 cut(s)	250, 324, 378
BstMBI	GATC	3 cut(s)	247, 321, 375
BstNSI	RCATGY	1 cut(s)	208
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	472
Csp6I	GTAC	4 cut(s)	112, 208, 217, 351
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	6 cut(s)	7, 74, 242, 269, 329, 334
CviKI_1	RGCY	6 cut(s)	7, 74, 242, 269, 329, 334
CviQI	GTAC	4 cut(s)	112, 208, 217, 351
DdeI	CTNAG	2 cut(s)	261, 330
DpnI	GATC	3 cut(s)	249, 323, 377
DpnII	GATC	3 cut(s)	247, 321, 375
EaeI	YGGCCR	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoT22I	ATGCAT	2 cut(s)	406, 447
FaeI	CATG	1 cut(s)	208
FaiI	YATR	5 cut(s)	206, 279, 410, 420, 443
FatI	CATG	1 cut(s)	204
FokI	GGATG	1 cut(s)	284
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	1 cut(s)	208
HindIII	AAGCTT	2 cut(s)	5, 332
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	4 cut(s)	234, 252, 397, 415
Hpy188III	TCNNGA	2 cut(s)	55, 310
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	148, 164, 221
HpyCH4V	TGCA	5 cut(s)	258, 297, 339, 404, 445
HpyF3I	CTNAG	2 cut(s)	261, 330
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	247, 321, 375
LpnPI	CCDG	8 cut(s)	31, 68, 172, 177, 241, 271, 339, 486
LweI	GCATC	2 cut(s)	306, 391
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	249, 323, 377
MboI	GATC	3 cut(s)	247, 321, 375
MboII	GAAGA	2 cut(s)	70, 148
MhlI	GDGCHC	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	4 cut(s)	77, 107, 359, 367
MluNI	TGGCCA	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	87, 168, 336, 440
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	2 cut(s)	406, 447
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	2 cut(s)	477, 490
MslI	CAYNNNNRTG	2 cut(s)	18, 263
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	1 cut(s)	473
NdeII	GATC	3 cut(s)	247, 321, 375
NlaIII	CATG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	2 cut(s)	406, 447
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	424
PciI	ACATGT	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	45
PscI	ACATGT	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	325
RsaI	GTAC	4 cut(s)	113, 209, 218, 352
RsaNI	GTAC	4 cut(s)	112, 208, 217, 351
RseI	CAYNNNNRTG	2 cut(s)	18, 263
SaqAI	TTAA	2 cut(s)	477, 490
Sau3AI	GATC	3 cut(s)	247, 321, 375
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	9 cut(s)	9, 66, 98, 145, 179, 290, 331, 336, 442
SfaNI	GCATC	2 cut(s)	306, 391
SfuI	TTCGAA	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	18, 263
Sse9I	AATT	4 cut(s)	77, 107, 359, 367
SsiI	CCGC	1 cut(s)	104
TaaI	ACNGT	3 cut(s)	148, 164, 221
TaqI	TCGA	1 cut(s)	424
TasI	AATT	4 cut(s)	77, 107, 359, 367
TatI	WGTACW	2 cut(s)	111, 207
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	2 cut(s)	477, 490
Tru9I	TTAA	2 cut(s)	477, 490
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	45
VneI	GTGCAC	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	208
Zsp2I	ATGCAT	2 cut(s)	406, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.