Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004645.1

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

26589 .. 30506

Gene Structure 3918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004645.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ctgaatgagacctgtgcgctgccgtttagtggctggacggaagatttctggtcgggtcttctttgcggtttccgggttcgagaaacgggtctccagcacttcgcggttgcatgttgtgcaggtggagcgaaagtgagagaggcctctgagattgtaaccgtcttctctaaattcgtagacatggttgctctcaagtttcaccagtaccaggtggtgggtagggctctccccaaggatgccgaggacacccccaagatctaccgcatgaagctttggcacaccaatgatgttcgcgccaagtccaagttctggtatttcctgaagaaggtgaaggtgaagaagagcaatggccaaattgttgccatcaatgaggttgtgccagaagcgctcgacaaagctaatttatctgagagagatttgtctgcagttgctgttaccattggtcctggtttaagcctttgtcttcgtggaggacacaatgtactcatccttgctcgtgatcttggtcattatgttgtacaacttgggaccacaatagatgatgccattggtgaggcatatgataagatagcaaaatggcttggtcttgacttgaggagaagtggtgccagctatagaagagctagcccgagagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000408 GO:0002949 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

212

Amino Acids

23.5

Weight (kDa)

9.3

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	2 cut(s)	214, 309
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	104, 294
AciI	CCGC	3 cut(s)	66, 104, 262
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	3 cut(s)	206, 483, 519
AfeI	AGCGCT	1 cut(s)	387
AfiI	CCNNNNNNNGG	5 cut(s)	29, 208, 214, 309, 325
AjnI	CCWGG	2 cut(s)	207, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	4 cut(s)	271, 398, 612, 623
AluI	AGCT	4 cut(s)	271, 398, 612, 623
Alw26I	GTCTC	2 cut(s)	2, 95
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	628
Aor51HI	AGCGCT	1 cut(s)	387
AoxI	GGCC	2 cut(s)	141, 349
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	19, 296, 388
AspS9I	GGNCC	2 cut(s)	443, 528
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	4 cut(s)	191, 340, 346, 563
AsuNHI	GCTAGC	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	2 cut(s)	443, 528
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	3 cut(s)	50, 154, 455
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	7
BciT130I	CCWGG	2 cut(s)	209, 447
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	2, 95
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	2 cut(s)	423, 613
BfoI	RGCGCY	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	3 cut(s)	74, 209, 447
Bme18I	GGWCC	2 cut(s)	443, 528
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	443, 528
BmiI	GGNNCC	2 cut(s)	529, 607
BmrFI	CCNGG	3 cut(s)	74, 209, 447
BmsI	GCATC	2 cut(s)	226, 532
BmtI	GCTAGC	1 cut(s)	627
BpiI	GAAGAC	3 cut(s)	50, 154, 455
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	176, 613
BpuMI	CCSGG	1 cut(s)	74
BsaI	GGTCTC	2 cut(s)	2, 95
BsaJI	CCNNGG	2 cut(s)	231, 240
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 589, 619
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 208, 214, 309, 325
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	209, 447
BseDI	CCNNGG	2 cut(s)	231, 240
BseGI	GGATG	2 cut(s)	241, 486
BseLI	CCNNNNNNNGG	5 cut(s)	29, 208, 214, 309, 325
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	138, 399
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	610
BseXI	GCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	104, 294
BshFI	GGCC	2 cut(s)	143, 351
BshNI	GGYRCC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	5 cut(s)	29, 208, 214, 309, 325
BsmAI	GTCTC	2 cut(s)	2, 95
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	143, 351
Bso31I	GGTCTC	2 cut(s)	2, 95
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	255, 499
BspACI	CCGC	3 cut(s)	66, 104, 262
BspANI	GGCC	2 cut(s)	143, 351
BspCNI	CTCAG	2 cut(s)	139, 400
BspFNI	CGCG	2 cut(s)	104, 294
BspLI	GGNNCC	2 cut(s)	529, 607
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	110
BspOI	GCTAGC	1 cut(s)	627
BspQI	GCTCTTC	2 cut(s)	335, 613
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	2 cut(s)	2, 95
BsrDI	GCAATG	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	231, 240
BssMI	GATC	2 cut(s)	255, 499
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	209, 447
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	335, 613
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	610, 625
BstDEI	CTNAG	2 cut(s)	147, 408
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	241, 486
BstFNI	CGCG	2 cut(s)	104, 294
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	3 cut(s)	19, 296, 388
BstKTI	GATC	2 cut(s)	258, 502
BstMAI	GTCTC	2 cut(s)	2, 95
BstMBI	GATC	2 cut(s)	255, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 125, 385
BstNI	CCWGG	2 cut(s)	209, 447
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	3 cut(s)	72, 207, 445
BstSFI	CTRYAG	2 cut(s)	423, 613
BstUI	CGCG	2 cut(s)	104, 294
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	3 cut(s)	50, 154, 455
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	143, 351
BtsCI	GGATG	2 cut(s)	241, 486
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	610, 625
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	3 cut(s)	19, 296, 388
Cfr13I	GGNCC	2 cut(s)	443, 528
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	3 cut(s)	205, 482, 518
CviAII	CATG	3 cut(s)	111, 181, 265
CviQI	GTAC	3 cut(s)	205, 482, 518
DdeI	CTNAG	2 cut(s)	147, 408
DpnI	GATC	2 cut(s)	257, 501
DpnII	GATC	2 cut(s)	255, 499
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	2 cut(s)	335, 613
EarI	CTCTTC	2 cut(s)	335, 613
Eco130I	CCWWGG	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	2 cut(s)	2, 95
Eco47I	GGWCC	2 cut(s)	443, 528
Eco47III	AGCGCT	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	628
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	207, 445
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	114, 184, 268
FaiI	YATR	7 cut(s)	112, 182, 266, 513, 559, 561, 615
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	3 cut(s)	110, 180, 264
FauNDI	CATATG	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	248, 473
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	3 cut(s)	18, 295, 387
GluI	GCNGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	143, 351
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	3 cut(s)	19, 296, 388
Hin1II	CATG	3 cut(s)	114, 184, 268
Hin6I	GCGC	3 cut(s)	17, 294, 386
HinP1I	GCGC	3 cut(s)	17, 294, 386
HindIII	AAGCTT	1 cut(s)	269
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	4 cut(s)	191, 340, 346, 563
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	148, 409
Hpy188III	TCNNGA	4 cut(s)	80, 319, 497, 587
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	2 cut(s)	319, 325
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	110, 119, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 125, 385
HpyF3I	CTNAG	2 cut(s)	147, 408
Hsp92II	CATG	3 cut(s)	114, 184, 268
HspAI	GCGC	3 cut(s)	17, 294, 386
Kzo9I	GATC	2 cut(s)	255, 499
LguI	GCTCTTC	2 cut(s)	335, 613
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	2 cut(s)	226, 532
MabI	ACCWGGT	1 cut(s)	207
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	154, 433
MalI	GATC	2 cut(s)	257, 501
MboI	GATC	2 cut(s)	255, 499
MboII	GAAGA	8 cut(s)	50, 53, 154, 334, 349, 352, 455, 630
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	3 cut(s)	170, 354, 400
MluNI	TGGCCA	1 cut(s)	351
MnlI	CCTC	8 cut(s)	133, 154, 235, 364, 464, 547, 588, 626
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	74, 209, 447
MvaI	CCWGG	2 cut(s)	209, 447
MvnI	CGCG	2 cut(s)	104, 294
MwoI	GCNNNNNNNGC	3 cut(s)	116, 125, 385
NciI	CCSGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	2 cut(s)	255, 499
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	3 cut(s)	114, 184, 268
NlaIV	GGNNCC	2 cut(s)	529, 607
NmeAIII	GCCGAG	1 cut(s)	265
NspI	RCATGY	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	110
PceI	AGGCCT	1 cut(s)	143
PciSI	GCTCTTC	2 cut(s)	335, 613
PflMI	CCANNNNNTGG	2 cut(s)	214, 309
PkrI	GCNGC	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	207, 445
PspGI	CCWGG	2 cut(s)	207, 445
PspN4I	GGNNCC	2 cut(s)	529, 607
PspPI	GGNCC	2 cut(s)	443, 528
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	3 cut(s)	206, 483, 519
RsaNI	GTAC	3 cut(s)	205, 482, 518
RseI	CAYNNNNRTG	1 cut(s)	282
SapI	GCTCTTC	2 cut(s)	335, 613
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	255, 499
Sau96I	GGNCC	2 cut(s)	443, 528
ScrFI	CCNGG	3 cut(s)	74, 209, 447
SduI	GDGCHC	1 cut(s)	226
SexAI	ACCWGGT	1 cut(s)	207
SfaNI	GCATC	2 cut(s)	226, 532
SfcI	CTRYAG	2 cut(s)	423, 613
SinI	GGWCC	2 cut(s)	443, 528
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	191, 592
SmoI	CTYRAG	2 cut(s)	191, 592
Sse9I	AATT	3 cut(s)	170, 354, 400
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	3 cut(s)	66, 104, 262
SspMI	CTAG	1 cut(s)	624
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	3 cut(s)	72, 207, 445
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	79, 390
TasI	AATT	3 cut(s)	170, 354, 400
TatI	WGTACW	2 cut(s)	481, 517
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	53
Van91I	CCANNNNNTGG	2 cut(s)	214, 309
VpaK11BI	GGWCC	2 cut(s)	443, 528
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.