Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

83532124 .. 83532411

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35219

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTACAAGGAGTACCGTGACACCACTCTGAATGGGGATGTGGATCAGATGTGCACTGAGATGGCTTCACGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCGAGACTGCCACGATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGAACTCTAATGATGCATTTATGTCAGATTATGTTCGAATCCTCATTTTAGGTATGCATTGGATTAGAAACAGAACAACATTGCCAGTTAAGAAATGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

95

Amino Acids

11.2

Weight (kDa)

9.55

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	1 - 37	8.2e-11	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	51, 112
AfaI	GTAC	3 cut(s)	5, 14, 148
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	2 cut(s)	125, 130
AluI	AGCT	2 cut(s)	125, 130
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	51, 112
ApaLI	GTGCAC	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	126
BmsI	GCATC	2 cut(s)	102, 187
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	42
BseGI	GGATG	2 cut(s)	43, 93
BseJI	GATNNNNATC	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	43, 117, 171
Bsp1720I	GCTNAGC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	49
BspPI	GGATC	2 cut(s)	51, 112
BspT104I	TTCGAA	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	3 cut(s)	43, 117, 171
Bst4CI	ACNGT	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	57, 126
BstF5I	GGATG	2 cut(s)	43, 93
BstKTI	GATC	3 cut(s)	46, 120, 174
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	43, 117, 171
BstSLI	GKGCMC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	43, 93
BtsIMutI	CAGTG	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	4, 13, 147
CviJI	RGCY	3 cut(s)	65, 125, 130
CviKI_1	RGCY	3 cut(s)	65, 125, 130
CviQI	GTAC	3 cut(s)	4, 13, 147
DdeI	CTNAG	2 cut(s)	57, 126
DpnI	GATC	3 cut(s)	45, 119, 173
DpnII	GATC	3 cut(s)	43, 117, 171
EcoT22I	ATGCAT	2 cut(s)	202, 243
FaiI	YATR	3 cut(s)	206, 216, 239
FokI	GGATG	2 cut(s)	50, 80
GsaI	CCCAGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	30, 48, 211
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	5 cut(s)	54, 93, 135, 200, 241
HpyF3I	CTNAG	2 cut(s)	57, 126
Kzo9I	GATC	3 cut(s)	43, 117, 171
LpnPI	CCDG	4 cut(s)	61, 67, 135, 282
LweI	GCATC	2 cut(s)	102, 187
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	45, 119, 173
MboI	GATC	3 cut(s)	43, 117, 171
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	155, 163
MnlI	CCTC	2 cut(s)	132, 236
Mph1103I	ATGCAT	2 cut(s)	202, 243
MseI	TTAA	2 cut(s)	273, 286
MslI	CAYNNNNRTG	1 cut(s)	59
NdeII	GATC	3 cut(s)	43, 117, 171
NmuCI	GTSAC	1 cut(s)	17
NsiI	ATGCAT	2 cut(s)	202, 243
NspV	TTCGAA	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	121
RsaI	GTAC	3 cut(s)	5, 14, 148
RsaNI	GTAC	3 cut(s)	4, 13, 147
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	273, 286
Sau3AI	GATC	3 cut(s)	43, 117, 171
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	4 cut(s)	86, 127, 132, 238
SfaNI	GCATC	2 cut(s)	102, 187
SfuI	TTCGAA	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	155, 163
TaaI	ACNGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	105, 220
TasI	AATT	2 cut(s)	155, 163
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	2 cut(s)	273, 286
Tru9I	TTAA	2 cut(s)	273, 286
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspRI	CASTG	1 cut(s)	61
VneI	GTGCAC	1 cut(s)	52
Zsp2I	ATGCAT	2 cut(s)	202, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.