Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Reverse (-)

9349603 .. 9352630

Gene Structure 3028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTTCCACCTATTAAAACAGGGATTGATCTGATCATAGTATCATACAAGACTTCTAGTTGTTTAGATGGTGCATTAGAGCGAAAGCTAGAGAGAGAGAGAGAGGCGTCAGAGATCGTAGCCGTCTTCTCTAAATTGGCAGACATGGTCGCTCTCAAGTTTCACCAGTACCAGGTGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCCAAGATCTACCGCATGAAGCTTTGGCACACCAATGAGGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGCTGAAGAAGGTCAAGAAGAGCAATGGCCAAATGCTTGCCATCAATGAGATTTTTGAGAAGAAACCTACTGTTGTTGAGAACTATGGTATTTGGTTGAGGTATCAAAGCAGGACAGGGTATCACAACATGTACAAGGAGTACCGTGACACCACTCTGAATGGGGCTGTGGATCAGATGTACACTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACGGCCACTATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGATTTCCAGGAAGGTCAGGCCACCAACCAGGAAGTTGAAGACCACATACAAGGCATCAAGGCCCAACTTGTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

226

Amino Acids

26.54

Weight (kDa)

10.09

Isoelectric Point (pI)

24.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	55 - 176	2e-23	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	178, 273
AccII	CGCG	1 cut(s)	258
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	468
AcoI	YGGCCR	2 cut(s)	316, 528
AcuI	CTGAAG	2 cut(s)	305, 314
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	5 cut(s)	170, 422, 431, 470, 565
AfiI	CCNNNNNNNGG	3 cut(s)	172, 178, 273
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	3 cut(s)	171, 608, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	88, 235, 292, 542, 547
AluI	AGCT	5 cut(s)	88, 235, 292, 542, 547
AlwI	GGATC	1 cut(s)	468
AoxI	GGCC	4 cut(s)	316, 528, 620, 662
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	663
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	632, 664
BbsI	GAAGAC	2 cut(s)	118, 647
BccI	CCATC	3 cut(s)	62, 338, 472
BceAI	ACGGC	2 cut(s)	107, 543
BciT130I	CCWGG	3 cut(s)	173, 610, 631
BclI	TGATCA	1 cut(s)	33
BfaI	CTAG	2 cut(s)	57, 89
BglII	AGATCT	1 cut(s)	219
BlpI	GCTNAGC	1 cut(s)	543
Bme1390I	CCNGG	3 cut(s)	173, 610, 631
BmgT120I	GGNCC	1 cut(s)	663
BmrFI	CCNGG	3 cut(s)	173, 610, 631
BmsI	GCATC	3 cut(s)	190, 519, 665
BpiI	GAAGAC	2 cut(s)	118, 647
Bpu1102I	GCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	195, 204
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 178, 273
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	3 cut(s)	173, 610, 631
BseDI	CCNNGG	2 cut(s)	195, 204
BseGI	GGATG	2 cut(s)	205, 510
BseLI	CCNNNNNNNGG	3 cut(s)	172, 178, 273
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	4 cut(s)	318, 530, 622, 664
BslI	CCNNNNNNNGG	3 cut(s)	172, 178, 273
BsnI	GGCC	4 cut(s)	318, 530, 622, 664
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	2 cut(s)	420, 468
Bsp143I	GATC	6 cut(s)	28, 33, 114, 219, 460, 588
Bsp1720I	GCTNAGC	1 cut(s)	543
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	4 cut(s)	318, 530, 622, 664
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	319
BsrGI	TGTACA	2 cut(s)	420, 468
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	195, 204
BssMI	GATC	6 cut(s)	28, 33, 114, 219, 460, 588
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	3 cut(s)	173, 610, 631
Bst4CI	ACNGT	2 cut(s)	361, 434
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	107
BstAUI	TGTACA	2 cut(s)	420, 468
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	474, 543
BstF5I	GGATG	2 cut(s)	205, 510
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	6 cut(s)	31, 36, 117, 222, 463, 591
BstMBI	GATC	6 cut(s)	28, 33, 114, 219, 460, 588
BstNI	CCWGG	3 cut(s)	173, 610, 631
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	171, 608, 629
BstUI	CGCG	1 cut(s)	258
BstV2I	GAAGAC	2 cut(s)	118, 647
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	4 cut(s)	318, 530, 622, 664
BtsCI	GGATG	2 cut(s)	205, 510
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	663
CseI	GACGC	1 cut(s)	96
CsiI	ACCWGGT	1 cut(s)	171
Csp6I	GTAC	5 cut(s)	169, 421, 430, 469, 564
CviAII	CATG	3 cut(s)	145, 229, 418
CviQI	GTAC	5 cut(s)	169, 421, 430, 469, 564
DdeI	CTNAG	2 cut(s)	474, 543
DpnI	GATC	6 cut(s)	30, 35, 116, 221, 462, 590
DpnII	GATC	6 cut(s)	28, 33, 114, 219, 460, 588
EaeI	YGGCCR	2 cut(s)	316, 528
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	305, 314
EcoRII	CCWGG	3 cut(s)	171, 608, 629
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	148, 232, 421
FaiI	YATR	7 cut(s)	38, 46, 146, 230, 375, 419, 649
FatI	CATG	3 cut(s)	144, 228, 417
FbaI	TGATCA	1 cut(s)	33
FokI	GGATG	2 cut(s)	212, 497
FriOI	GRGCYC	1 cut(s)	190
FspBI	CTAG	2 cut(s)	57, 89
GlaI	GCGC	1 cut(s)	259
GsaI	CCCAGC	1 cut(s)	542
HaeIII	GGCC	4 cut(s)	318, 530, 622, 664
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	148, 232, 421
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	2 cut(s)	233, 545
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	4 cut(s)	33, 112, 447, 465
Hpy188III	TCNNGA	3 cut(s)	283, 304, 523
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	2 cut(s)	292, 607
HpyCH4III	ACNGT	2 cut(s)	361, 434
HpyCH4V	TGCA	3 cut(s)	74, 510, 552
HpyF3I	CTNAG	2 cut(s)	474, 543
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	148, 232, 421
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	28, 33, 114, 219, 460, 588
LguI	GCTCTTC	1 cut(s)	302
LweI	GCATC	3 cut(s)	190, 519, 665
MabI	ACCWGGT	1 cut(s)	171
MaeI	CTAG	2 cut(s)	57, 89
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	6 cut(s)	30, 35, 116, 221, 462, 590
MboI	GATC	6 cut(s)	28, 33, 114, 219, 460, 588
MboII	GAAGA	6 cut(s)	118, 298, 307, 319, 361, 652
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	3 cut(s)	134, 572, 580
MluNI	TGGCCA	1 cut(s)	318
MnlI	CCTC	5 cut(s)	97, 199, 244, 381, 549
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	2 cut(s)	246, 476
Msp20I	TGGCCA	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	173, 610, 631
MvaI	CCWGG	3 cut(s)	173, 610, 631
MvnI	CGCG	1 cut(s)	258
NdeII	GATC	6 cut(s)	28, 33, 114, 219, 460, 588
NlaIII	CATG	3 cut(s)	148, 232, 421
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	421
PciI	ACATGT	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	2 cut(s)	178, 273
PfoI	TCCNGGA	1 cut(s)	608
PscI	ACATGT	1 cut(s)	417
Psp6I	CCWGG	3 cut(s)	171, 608, 629
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	3 cut(s)	171, 608, 629
PspPI	GGNCC	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	219
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	5 cut(s)	170, 422, 431, 470, 565
RsaNI	GTAC	5 cut(s)	169, 421, 430, 469, 564
RseI	CAYNNNNRTG	2 cut(s)	246, 476
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	6 cut(s)	28, 33, 114, 219, 460, 588
Sau96I	GGNCC	1 cut(s)	663
ScrFI	CCNGG	3 cut(s)	173, 610, 631
SduI	GDGCHC	1 cut(s)	190
SexAI	ACCWGGT	1 cut(s)	171
SfaNI	GCATC	3 cut(s)	190, 519, 665
SmiMI	CAYNNNNRTG	2 cut(s)	246, 476
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	134, 572, 580
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	57, 89
StyD4I	CCNGG	3 cut(s)	171, 608, 629
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	361, 434
TasI	AATT	3 cut(s)	134, 572, 580
TatI	WGTACW	2 cut(s)	420, 468
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	478
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	2 cut(s)	178, 273
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	2 cut(s)	57, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.