Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Reverse (-)

42143902 .. 42146343

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTGGTTGTTTGTTTTTCACCAGTACCAGGTGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCAAGATCTACCTTCTGGTATTTCCTGAAGAAGGTGAAGAAGAGCAATGGCCAAATTGTTGCCATCAATGAGATTTTGGAGAAGAAACCTACTGTTGTTGAGAACTACGGGTATCACAACATGTACAAGGAGTTGTATATGAATCTGATCAATTTCCTTTCTTTCAATGTTAGATATCCTCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

85

Amino Acids

10.24

Weight (kDa)

9.4

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	2 cut(s)	26, 194
AfiI	CCNNNNNNNGG	3 cut(s)	28, 34, 100
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	11, 115
BalI	TGGCCA	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	46
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	216
BglII	AGATCT	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	51, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 34, 100
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	51, 60
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	28, 34, 100
BseMI	GCAATG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	28, 34, 100
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	74, 216
BspANI	GGCC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	51, 60
BssMI	GATC	2 cut(s)	74, 216
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	2 cut(s)	77, 219
BstMBI	GATC	2 cut(s)	74, 216
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	61
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	25, 193
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	2 cut(s)	44, 120
CviKI_1	RGCY	2 cut(s)	44, 120
CviQI	GTAC	2 cut(s)	25, 193
DpnI	GATC	2 cut(s)	76, 218
DpnII	GATC	2 cut(s)	74, 216
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	191, 207, 209
FatI	CATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	216
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	1 cut(s)	211
HphI	GGTGA	2 cut(s)	11, 115
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	91, 94
HpyCH4III	ACNGT	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	74, 216
LguI	GCTCTTC	1 cut(s)	104
LpnPI	CCDG	5 cut(s)	14, 35, 41, 70, 107
LweI	GCATC	1 cut(s)	46
MabI	ACCWGGT	1 cut(s)	27
MalI	GATC	2 cut(s)	76, 218
MboI	GATC	2 cut(s)	74, 216
MboII	GAAGA	4 cut(s)	109, 118, 121, 163
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	2 cut(s)	123, 220
MluNI	TGGCCA	1 cut(s)	120
MnlI	CCTC	2 cut(s)	55, 258
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
NdeII	GATC	2 cut(s)	74, 216
NlaIII	CATG	1 cut(s)	193
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	193
PciI	ACATGT	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	34
PscI	ACATGT	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	2 cut(s)	26, 194
RsaNI	GTAC	2 cut(s)	25, 193
SapI	GCTCTTC	1 cut(s)	104
Sau3AI	GATC	2 cut(s)	74, 216
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	4 cut(s)	33, 83, 105, 160
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	46
Sse9I	AATT	2 cut(s)	123, 220
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	2 cut(s)	123, 220
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	98
XceI	RCATGY	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.