Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

12176058 .. 12178206

Gene Structure 2149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1135800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTGTTTTCAGGTTTCACCAGTACCAGGTGGTGGGGAGAGCCCTCCCGACTGAGAAGGATGAGCACCCCAAGATCTACCGGATGAAGCTCTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTCTTGAGGAAGTTGAAGAAAGTGAAGAAAAGCAATGGACAAGTTTTGGCCATCAATGAGATTTTTGAGAAATATCCTACTACCATCAAGAACTATGGGATTTGGCTTCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAGTACCGAGACACAACTCTCAACGGTGCTGTTGAAGCGATGTACACTGAGTTGGCATCTCGTCACAGGGTGAGGTTTCCGTGCATCCAAATCATCAAGACAGCTACCATCCCTGCAAAACTCTGCAAGAGGGAGAGCACCAAGCAGTTCCATAACTCCAAGATCAAGTTCCCGTTGGTGTTCAGGAAGGTTAGGCCCCCAAGCAGGAAGCTCAAGACGACATACAAGGCGTCCAGGCCCAACCTCTTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010154 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0022414 GO:0022625 GO:0022626 GO:0030054 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040007 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044706 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055044 GO:0060560 GO:0061458 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

179

Amino Acids

21.33

Weight (kDa)

10.42

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	7 - 128	2.1e-23	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	512
AdeI	CACNNNGTG	1 cut(s)	352
AfaI	GTAC	5 cut(s)	26, 134, 278, 287, 326
AfiI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 486
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	151, 317
AjnI	CCWGG	2 cut(s)	27, 515
AjuI	GAANNNNNNNTTGG	4 cut(s)	110, 142, 434, 466
AluBI	AGCT	3 cut(s)	91, 386, 493
AluI	AGCT	3 cut(s)	91, 386, 493
Alw21I	GWGCWC	2 cut(s)	69, 422
Alw26I	GTCTC	1 cut(s)	285
AoxI	GGCC	4 cut(s)	96, 183, 476, 518
AspS9I	GGNCC	4 cut(s)	96, 109, 477, 519
AsuHPI	GGTGA	2 cut(s)	11, 364
AvaII	GGWCC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	69, 422
BccI	CCATC	3 cut(s)	194, 227, 398
BciT130I	CCWGG	2 cut(s)	29, 517
BcoDI	GTCTC	1 cut(s)	285
BglII	AGATCT	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	29, 517
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	4 cut(s)	96, 109, 477, 519
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	2 cut(s)	29, 517
BmsI	GCATC	2 cut(s)	347, 375
BpuEI	CTTGAG	2 cut(s)	160, 479
BsaHI	GRCGYC	1 cut(s)	512
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 486
Bse1I	ACTGG	2 cut(s)	22, 265
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	29, 517
BseGI	GGATG	4 cut(s)	67, 90, 366, 390
BseLI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 486
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	45, 321
BseNI	ACTGG	2 cut(s)	22, 265
BshFI	GGCC	4 cut(s)	98, 185, 478, 520
BsiHKAI	GWGCWC	2 cut(s)	69, 422
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	4 cut(s)	28, 34, 129, 486
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	4 cut(s)	98, 185, 478, 520
Bsp1286I	GDGCHC	3 cut(s)	46, 69, 422
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	2 cut(s)	75, 444
BspANI	GGCC	4 cut(s)	98, 185, 478, 520
BspCNI	CTCAG	2 cut(s)	46, 322
BspLI	GGNNCC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	2 cut(s)	22, 265
BssMI	GATC	2 cut(s)	75, 444
BssNI	GRCGYC	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	29, 517
Bst4CI	ACNGT	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	512
BstAUI	TGTACA	2 cut(s)	276, 324
BstDEI	CTNAG	2 cut(s)	54, 330
BstF5I	GGATG	4 cut(s)	67, 90, 366, 390
BstKTI	GATC	2 cut(s)	78, 447
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	2 cut(s)	75, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	29, 517
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	27, 515
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	98, 185, 478, 520
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	4 cut(s)	67, 90, 366, 390
BtsIMutI	CAGTG	1 cut(s)	327
Cfr13I	GGNCC	4 cut(s)	96, 109, 477, 519
CseI	GACGC	1 cut(s)	501
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	5 cut(s)	25, 133, 277, 286, 325
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	5 cut(s)	25, 133, 277, 286, 325
DdeI	CTNAG	2 cut(s)	54, 330
DpnI	GATC	2 cut(s)	77, 446
DpnII	GATC	2 cut(s)	75, 444
DraIII	CACNNNGTG	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	27, 515
EcoRV	GATATC	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	1 cut(s)	277
FaiI	YATR	5 cut(s)	231, 275, 435, 505, 533
FatI	CATG	1 cut(s)	273
FokI	GGATG	4 cut(s)	74, 97, 353, 377
FriOI	GRGCYC	1 cut(s)	46
HaeIII	GGCC	4 cut(s)	98, 185, 478, 520
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	1 cut(s)	277
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	11, 364
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	6 cut(s)	49, 139, 223, 379, 466, 496
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	52, 463
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	366, 398, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	54, 330
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	75, 444
LweI	GCATC	2 cut(s)	347, 375
MabI	ACCWGGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	2 cut(s)	77, 446
MboI	GATC	2 cut(s)	75, 444
MboII	GAAGA	2 cut(s)	163, 172
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	3 cut(s)	46, 69, 422
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
MnlI	CCTC	6 cut(s)	56, 100, 135, 348, 405, 536
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	29, 517
MvaI	CCWGG	2 cut(s)	29, 517
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	2 cut(s)	75, 444
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	479
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	27, 515
PspGI	CCWGG	2 cut(s)	27, 515
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	4 cut(s)	96, 109, 477, 519
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	5 cut(s)	26, 134, 278, 287, 326
RsaNI	GTAC	5 cut(s)	25, 133, 277, 286, 325
Sau3AI	GATC	2 cut(s)	75, 444
Sau96I	GGNCC	4 cut(s)	96, 109, 477, 519
ScrFI	CCNGG	2 cut(s)	29, 517
SduI	GDGCHC	3 cut(s)	46, 69, 422
SetI	ASST	9 cut(s)	17, 33, 93, 111, 359, 388, 474, 495, 528
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	347, 375
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	139, 494
SmoI	CTYRAG	2 cut(s)	139, 494
StyD4I	CCNGG	2 cut(s)	27, 515
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	244
TatI	WGTACW	2 cut(s)	276, 324
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	2 cut(s)	101, 351
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.