Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

47407894 .. 47409253

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57998

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTTGCTCTCAAGTTTCACCAGTACCAGATGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCCAAGATCTTCCGCATGAAGCTTTGGCACACCAATGATGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGGTGAAGGTGAAGAAGAGCAATGGCCAAATTGTTGCCATCAATGAGGTTCAGTCTGGCAAGGCTTCTGAAAAGCTGTTGTTTACGTACTTCCCTTTCCTGGGACGAGTAGTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

87

Amino Acids

10.21

Weight (kDa)

10.21

Isoelectric Point (pI)

14.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	26, 233
AfiI	CCNNNNNNNGG	5 cut(s)	34, 129, 145, 244, 245
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AloI	GAACNNNNNNTCC	1 cut(s)	240
AluBI	AGCT	2 cut(s)	91, 220
AluI	AGCT	2 cut(s)	91, 220
AoxI	GGCC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	11, 160, 166
BalI	TGGCCA	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	46
BccI	CCATC	2 cut(s)	25, 191
BciT130I	CCWGG	1 cut(s)	245
BglII	AGATCT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	51, 60, 244
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 129, 145, 244, 245
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	51, 60, 244
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	5 cut(s)	34, 129, 145, 244, 245
BseMI	GCAATG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	171
BslI	CCNNNNNNNGG	5 cut(s)	34, 129, 145, 244, 245
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	51, 60, 244
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSNI	TACGTA	1 cut(s)	231
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	25, 232
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	5 cut(s)	44, 91, 171, 209, 220
CviKI_1	RGCY	5 cut(s)	44, 91, 171, 209, 220
CviQI	GTAC	2 cut(s)	25, 232
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco105I	TACGTA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FatI	CATG	1 cut(s)	84
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	46
GlaI	GCGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	89
HphI	GGTGA	3 cut(s)	11, 160, 166
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	139, 145
HpyCH4IV	ACGT	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	155
LpnPI	CCDG	7 cut(s)	35, 41, 115, 152, 186, 230, 257
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	230
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	70, 154, 169, 172
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	171
MnlI	CCTC	2 cut(s)	55, 184
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	114
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	88
NmeAIII	GCCGAG	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	155
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
Ppu21I	YACGTR	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	2 cut(s)	26, 233
RsaNI	GTAC	2 cut(s)	25, 232
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	6 cut(s)	93, 150, 156, 195, 222, 233
SfaNI	GCATC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SnaBI	TACGTA	1 cut(s)	231
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	233
TasI	AATT	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	101
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
XagI	CCTNNNNNAGG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.