Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

34940156 .. 34941734

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTGTGCAGGTGGAGCGAAAGTGAGAGAGGCCTCCCCAAGTTTCACCAGTACCAGGTGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCCAAGATCTACCGCATGAAGCTTTGGCACACCAATGATGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGGTGAAGGTGAAGGTGAAGGTGAAGAAGAGCAATGGCCAAATTGTTGCCATCAATGAGGTTCAGTCTGGCAAGGCTTCTGAAAAGCTGCTGTTTACGTACTTCTCTTTCCTGGGGTTTGGTGTTTTGGCCATCCTACATGGGCTGCTGACAACTTCCAGGACGAGTAGTTCAATGATTGGCAAGAGACCTATGCTGGGCAGGAAAAAGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

129

Amino Acids

14.82

Weight (kDa)

10.44

Isoelectric Point (pI)

24.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	61, 156
AccII	CGCG	1 cut(s)	141
AciI	CCGC	1 cut(s)	109
AcoI	YGGCCR	2 cut(s)	208, 300
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	2 cut(s)	53, 272
AfiI	CCNNNNNNNGG	5 cut(s)	55, 61, 156, 172, 368
AgsI	TTSAA	1 cut(s)	345
AjnI	CCWGG	3 cut(s)	54, 282, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AloI	GAACNNNNNNTCC	2 cut(s)	325, 357
AluBI	AGCT	2 cut(s)	118, 259
AluI	AGCT	2 cut(s)	118, 259
Alw26I	GTCTC	1 cut(s)	352
AoxI	GGCC	3 cut(s)	31, 208, 300
ApeKI	GCWGC	2 cut(s)	259, 316
AspLEI	GCGC	1 cut(s)	143
AsuHPI	GGTGA	5 cut(s)	38, 187, 193, 199, 205
BalI	TGGCCA	2 cut(s)	210, 302
BanII	GRGCYC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	246, 303
BccI	CCATC	2 cut(s)	230, 311
BciT130I	CCWGG	3 cut(s)	56, 284, 331
BcoDI	GTCTC	1 cut(s)	352
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	2 cut(s)	260, 317
BlsI	GCNGC	2 cut(s)	261, 318
Bme1390I	CCNGG	3 cut(s)	56, 284, 331
BmrFI	CCNGG	3 cut(s)	56, 284, 331
BmsI	GCATC	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	3 cut(s)	78, 87, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 61, 156, 172, 368
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	3 cut(s)	56, 284, 331
BseDI	CCNNGG	3 cut(s)	78, 87, 283
BseGI	GGATG	2 cut(s)	88, 303
BseLI	CCNNNNNNNGG	5 cut(s)	55, 61, 156, 172, 368
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	246, 303
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	33, 210, 302
BslI	CCNNNNNNNGG	5 cut(s)	55, 61, 156, 172, 368
BsmAI	GTCTC	1 cut(s)	352
BsnI	GGCC	3 cut(s)	33, 210, 302
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	3 cut(s)	33, 210, 302
BspFNI	CGCG	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	78, 87, 283
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	3 cut(s)	56, 284, 331
Bst6I	CTCTTC	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	88, 303
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	3 cut(s)	56, 284, 331
BstSCI	CCNGG	3 cut(s)	54, 282, 329
BstSNI	TACGTA	1 cut(s)	270
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	246, 303
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	33, 210, 302
BtsCI	GGATG	2 cut(s)	88, 303
CfoI	GCGC	1 cut(s)	143
CsiI	ACCWGGT	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	52, 271
CviAII	CATG	2 cut(s)	112, 311
CviJI	RGCY	9 cut(s)	33, 71, 118, 210, 248, 259, 302, 316, 386
CviKI_1	RGCY	9 cut(s)	33, 71, 118, 210, 248, 259, 302, 316, 386
CviQI	GTAC	2 cut(s)	52, 271
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
EaeI	YGGCCR	2 cut(s)	208, 300
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco105I	TACGTA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	3 cut(s)	54, 282, 329
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	115, 314
FaiI	YATR	3 cut(s)	113, 312, 365
FatI	CATG	2 cut(s)	111, 310
Fnu4HI	GCNGC	2 cut(s)	260, 317
FokI	GGATG	2 cut(s)	95, 290
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	260, 317
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	260, 317
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	33, 210, 302
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	115, 314
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	116
HphI	GGTGA	5 cut(s)	38, 187, 193, 199, 205
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	5 cut(s)	166, 172, 178, 184, 376
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	115, 314
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	102
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	2 cut(s)	246, 303
LweI	GCATC	1 cut(s)	73
MabI	ACCWGGT	1 cut(s)	54
MaeII	ACGT	1 cut(s)	269
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	3 cut(s)	181, 208, 211
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	2 cut(s)	210, 302
MluCI	AATT	1 cut(s)	213
MluNI	TGGCCA	2 cut(s)	210, 302
MnlI	CCTC	4 cut(s)	23, 44, 82, 223
Mox20I	TGGCCA	2 cut(s)	210, 302
MscI	TGGCCA	2 cut(s)	210, 302
MslI	CAYNNNNRTG	1 cut(s)	129
Msp20I	TGGCCA	2 cut(s)	210, 302
MspR9I	CCNGG	3 cut(s)	56, 284, 331
MvaI	CCWGG	3 cut(s)	56, 284, 331
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	2 cut(s)	115, 314
NmeAIII	GCCGAG	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	194
PflMI	CCANNNNNTGG	2 cut(s)	61, 156
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	261, 318
Ppu21I	YACGTR	1 cut(s)	270
Psp6I	CCWGG	3 cut(s)	54, 282, 329
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	3 cut(s)	54, 282, 329
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	2 cut(s)	53, 272
RsaNI	GTAC	2 cut(s)	52, 271
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	260, 317
Sau3AI	GATC	1 cut(s)	102
ScrFI	CCNGG	3 cut(s)	56, 284, 331
SduI	GDGCHC	1 cut(s)	73
SexAI	ACCWGGT	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	129
SnaBI	TACGTA	1 cut(s)	270
Sse9I	AATT	1 cut(s)	213
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	109
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	54, 282, 329
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	272
TasI	AATT	1 cut(s)	213
TseI	GCWGC	2 cut(s)	259, 316
TspDTI	ATGAA	1 cut(s)	128
Van91I	CCANNNNNTGG	2 cut(s)	61, 156
XagI	CCTNNNNNAGG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.