Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000256.1

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Reverse (-)

10280 .. 11517

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000256.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggtcgctctcaagtttcaccagtaccaggtggtgggtagggctctccccaaggatgccgaggacacccccaagatctaccgcatgaagctttggcacaccaatgaggttcgcgccaagtccaagttctggtatttcctgaagaagctgaagaaggtcaagaagagcaatggccaaatgcttgccatcaatgagatttttgagaagaaacctactgttgttgagaactacggtatttggttgaggtatcaaagcaggatagggtatcacaacatgtacaaggagtaccgtgacaccactctgaatggggctgtggatcagatgtacactgagatggcttctcgccacagggtcaggtttccttgcatccaaatcatcaagactgccaccatcccggctaagctttgcaagagggaaagtaccaagcaattccacaattccaagatcaagtttccattgatttccaggaaggtcaggccaccgaccaggaagttgaagaccacgtacaaggcatcaaggcccaacttgtttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

178

Amino Acids

21.23

Weight (kDa)

10.33

Isoelectric Point (pI)

24.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	34, 129
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	2 cut(s)	161, 170
AfaI	GTAC	6 cut(s)	26, 278, 287, 326, 421, 506
AfiI	CCNNNNNNNGG	3 cut(s)	28, 34, 129
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	496
AjnI	CCWGG	3 cut(s)	27, 464, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	91, 148, 403
AluI	AGCT	3 cut(s)	91, 148, 403
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	3 cut(s)	172, 476, 518
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	519
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BbsI	GAAGAC	1 cut(s)	503
BccI	CCATC	3 cut(s)	194, 328, 398
BciT130I	CCWGG	3 cut(s)	29, 466, 487
BcnI	CCSGG	1 cut(s)	395
BglII	AGATCT	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	399
Bme1390I	CCNGG	4 cut(s)	29, 395, 466, 487
BmgT120I	GGNCC	1 cut(s)	519
BmrFI	CCNGG	4 cut(s)	29, 395, 466, 487
BmsI	GCATC	3 cut(s)	46, 375, 521
BpiI	GAAGAC	1 cut(s)	503
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	51, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 34, 129
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	3 cut(s)	29, 466, 487
BseDI	CCNNGG	2 cut(s)	51, 60
BseGI	GGATG	3 cut(s)	61, 366, 390
BseLI	CCNNNNNNNGG	3 cut(s)	28, 34, 129
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	174, 478, 520
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	3 cut(s)	28, 34, 129
BsnI	GGCC	3 cut(s)	174, 478, 520
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	2 cut(s)	276, 324
Bsp143I	GATC	3 cut(s)	75, 316, 444
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	3 cut(s)	174, 478, 520
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	114
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	2 cut(s)	276, 324
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	51, 60
BssMI	GATC	3 cut(s)	75, 316, 444
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	29, 466, 487
Bst4CI	ACNGT	3 cut(s)	217, 233, 290
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	2 cut(s)	276, 324
BstBAI	YACGTR	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	330, 399
BstF5I	GGATG	3 cut(s)	61, 366, 390
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	78, 319, 447
BstMBI	GATC	3 cut(s)	75, 316, 444
BstNI	CCWGG	3 cut(s)	29, 466, 487
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	4 cut(s)	27, 393, 464, 485
BstUI	CGCG	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	174, 478, 520
BtsCI	GGATG	3 cut(s)	61, 366, 390
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	519
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	6 cut(s)	25, 277, 286, 325, 420, 505
CviAII	CATG	2 cut(s)	85, 274
CviQI	GTAC	6 cut(s)	25, 277, 286, 325, 420, 505
DdeI	CTNAG	2 cut(s)	330, 399
DpnI	GATC	3 cut(s)	77, 318, 446
DpnII	GATC	3 cut(s)	75, 316, 444
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	161, 170
EcoRII	CCWGG	3 cut(s)	27, 464, 485
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	88, 277
FaiI	YATR	2 cut(s)	86, 275
FatI	CATG	2 cut(s)	84, 273
FokI	GGATG	3 cut(s)	68, 353, 377
FriOI	GRGCYC	1 cut(s)	46
GlaI	GCGC	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	174, 478, 520
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	88, 277
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	2 cut(s)	89, 401
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	303, 321
Hpy188III	TCNNGA	3 cut(s)	139, 160, 379
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	148, 463
HpyCH4III	ACNGT	3 cut(s)	217, 233, 290
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	2 cut(s)	366, 408
HpyF3I	CTNAG	2 cut(s)	330, 399
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	2 cut(s)	88, 277
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	75, 316, 444
LguI	GCTCTTC	1 cut(s)	158
LweI	GCATC	3 cut(s)	46, 375, 521
MabI	ACCWGGT	1 cut(s)	27
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	3 cut(s)	77, 318, 446
MboI	GATC	3 cut(s)	75, 316, 444
MboII	GAAGA	5 cut(s)	154, 163, 175, 217, 508
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	2 cut(s)	428, 436
MluNI	TGGCCA	1 cut(s)	174
MnlI	CCTC	4 cut(s)	55, 100, 237, 405
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	102, 332
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	4 cut(s)	29, 395, 466, 487
MvaI	CCWGG	3 cut(s)	29, 466, 487
MvnI	CGCG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	3 cut(s)	75, 316, 444
NlaIII	CATG	2 cut(s)	88, 277
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	158
PflMI	CCANNNNNTGG	2 cut(s)	34, 129
PfoI	TCCNGGA	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	504
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	3 cut(s)	27, 464, 485
PspGI	CCWGG	3 cut(s)	27, 464, 485
PspPI	GGNCC	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	6 cut(s)	26, 278, 287, 326, 421, 506
RsaNI	GTAC	6 cut(s)	25, 277, 286, 325, 420, 505
RseI	CAYNNNNRTG	2 cut(s)	102, 332
SapI	GCTCTTC	1 cut(s)	158
Sau3AI	GATC	3 cut(s)	75, 316, 444
Sau96I	GGNCC	1 cut(s)	519
ScrFI	CCNGG	4 cut(s)	29, 395, 466, 487
SduI	GDGCHC	1 cut(s)	46
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	3 cut(s)	46, 375, 521
SmiMI	CAYNNNNRTG	2 cut(s)	102, 332
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	428, 436
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	4 cut(s)	27, 393, 464, 485
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	217, 233, 290
TaiI	ACGT	1 cut(s)	506
TasI	AATT	2 cut(s)	428, 436
TatI	WGTACW	2 cut(s)	276, 324
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	2 cut(s)	34, 129
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.