Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Reverse (-)

34850276 .. 34861333

Gene Structure 11058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG158800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTCGCTCTCAAGTTTCACCAGTACCAGGTGGTGGGTAGGGCTCTCCCCAAGGATGCCGAGGACACCCCCAAGATCTACCGCATGAAGCTTTGGCACACCAATGATGTTCGCCCCAAGTCTAAGTTCTGGTATTTCCTGAAGAAGGTGAAGATGGTGAAGAAGAGCAATGGCCAAATTGTTGCCATCAATGAGATTTTGGAGAAGAAACCTACTGTTGTTGAGAACTACGGTATTTGGTTGAGGTATCAAAGCAGGACAGGGTATCACAACATGTACAAGGAGTACCATGACACCAGTCTGAATGGGGCTGTGGATCAGATGTGCACTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACTACCATGATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGAACTCTGATGATGCATTTATGTCAGATTATGTTCGAATCCTCATTTTAGCAGAGAAGGTAGTGGAGAAGCTGGTGGACTTGAATATTGATTTCTTGAAGAACATATATCCTAAGATCGAGTTGGAAGGCCCTCGTCTTTGCTTCTTGTATAATGGGTTTTGCGGAGCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

210

Amino Acids

24.69

Weight (kDa)

9.54

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	7 - 127	1.5e-19	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AciI	CCGC	2 cut(s)	82, 621
AclWI	GGATC	2 cut(s)	324, 385
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	4 cut(s)	26, 278, 287, 421
AfiI	CCNNNNNNNGG	3 cut(s)	28, 34, 145
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	460, 541, 556
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	5 cut(s)	91, 398, 403, 529, 626
AluI	AGCT	5 cut(s)	91, 398, 403, 529, 626
Alw21I	GWGCWC	2 cut(s)	329, 628
Alw44I	GTGCAC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	324, 385
AoxI	GGCC	2 cut(s)	172, 586
ApaLI	GTGCAC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	11, 160, 169
AsuII	TTCGAA	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	46, 628
Bbv12I	GWGCWC	2 cut(s)	329, 628
BccI	CCATC	3 cut(s)	148, 194, 328
BciT130I	CCWGG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	587
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	3 cut(s)	46, 375, 460
BoxI	GACNNNNGTC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	493
BsaJI	CCNNGG	2 cut(s)	51, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 34, 145
Bse1I	ACTGG	2 cut(s)	22, 297
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	51, 60
BseGI	GGATG	2 cut(s)	61, 366
BseLI	CCNNNNNNNGG	3 cut(s)	28, 34, 145
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	22, 297
BseSI	GKGCMC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	394
BshFI	GGCC	2 cut(s)	174, 588
BsiHKAI	GWGCWC	2 cut(s)	329, 628
BslI	CCNNNNNNNGG	3 cut(s)	28, 34, 145
BsnI	GGCC	2 cut(s)	174, 588
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	3 cut(s)	46, 329, 628
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	5 cut(s)	75, 316, 390, 444, 573
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	2 cut(s)	82, 621
BspANI	GGCC	2 cut(s)	174, 588
BspCNI	CTCAG	1 cut(s)	322
BspPI	GGATC	2 cut(s)	324, 385
BspQI	GCTCTTC	1 cut(s)	158
BspT104I	TTCGAA	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	22, 297
BssECI	CCNNGG	2 cut(s)	51, 60
BssMI	GATC	5 cut(s)	75, 316, 390, 444, 573
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	217, 233
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	493
BstDEI	CTNAG	4 cut(s)	123, 330, 399, 570
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	61, 366
BstKTI	GATC	5 cut(s)	78, 319, 393, 447, 576
BstMBI	GATC	5 cut(s)	75, 316, 390, 444, 573
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	174, 588
BtsCI	GGATG	2 cut(s)	61, 366
BtsIMutI	CAGTG	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	587
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	4 cut(s)	25, 277, 286, 420
CviAII	CATG	4 cut(s)	85, 274, 290, 388
CviQI	GTAC	4 cut(s)	25, 277, 286, 420
DdeI	CTNAG	4 cut(s)	123, 330, 399, 570
DpnI	GATC	5 cut(s)	77, 318, 392, 446, 575
DpnII	GATC	5 cut(s)	75, 316, 390, 444, 573
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	46, 628
Eco53kI	GAGCTC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	626
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	475
EcoT38I	GRGCYC	2 cut(s)	46, 628
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	88, 277, 293, 391
FaiI	YATR	9 cut(s)	86, 275, 291, 389, 479, 489, 563, 565, 609
FatI	CATG	4 cut(s)	84, 273, 289, 387
FokI	GGATG	2 cut(s)	68, 353
FriOI	GRGCYC	2 cut(s)	46, 628
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	174, 588
Hin1II	CATG	4 cut(s)	88, 277, 293, 391
HindIII	AAGCTT	2 cut(s)	89, 401
HinfI	GANTC	1 cut(s)	495
HphI	GGTGA	3 cut(s)	11, 160, 169
Hpy166II	GTNNAC	2 cut(s)	327, 535
Hpy188I	TCNGA	4 cut(s)	303, 321, 466, 484
Hpy188III	TCNNGA	3 cut(s)	139, 379, 553
Hpy8I	GTNNAC	2 cut(s)	327, 535
HpyAV	CCTTC	3 cut(s)	139, 508, 578
HpyCH4III	ACNGT	2 cut(s)	217, 233
HpyCH4V	TGCA	4 cut(s)	327, 366, 408, 473
HpyF3I	CTNAG	4 cut(s)	123, 330, 399, 570
Hsp92II	CATG	4 cut(s)	88, 277, 293, 391
Kzo9I	GATC	5 cut(s)	75, 316, 390, 444, 573
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	623, 631
LweI	GCATC	3 cut(s)	46, 375, 460
MabI	ACCWGGT	1 cut(s)	27
MalI	GATC	5 cut(s)	77, 318, 392, 446, 575
MboI	GATC	5 cut(s)	75, 316, 390, 444, 573
MboII	GAAGA	6 cut(s)	154, 163, 172, 175, 217, 568
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	3 cut(s)	46, 329, 628
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	3 cut(s)	177, 428, 436
MluNI	TGGCCA	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	5 cut(s)	55, 237, 405, 509, 600
Mox20I	TGGCCA	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	102, 332
Msp20I	TGGCCA	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
NdeII	GATC	5 cut(s)	75, 316, 390, 444, 573
NlaIII	CATG	4 cut(s)	88, 277, 293, 391
NmeAIII	GCCGAG	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	493
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	495
PflMI	CCANNNNNTGG	1 cut(s)	34
PscI	ACATGT	1 cut(s)	273
PshAI	GACNNNNGTC	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	4 cut(s)	26, 278, 287, 421
RsaNI	GTAC	4 cut(s)	25, 277, 286, 420
RseI	CAYNNNNRTG	2 cut(s)	102, 332
SacI	GAGCTC	1 cut(s)	628
SapI	GCTCTTC	1 cut(s)	158
Sau3AI	GATC	5 cut(s)	75, 316, 390, 444, 573
Sau96I	GGNCC	1 cut(s)	587
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	3 cut(s)	46, 329, 628
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	3 cut(s)	46, 375, 460
SfuI	TTCGAA	1 cut(s)	493
SmiMI	CAYNNNNRTG	2 cut(s)	102, 332
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	177, 428, 436
SsiI	CCGC	2 cut(s)	82, 621
SspI	AATATT	1 cut(s)	544
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	217, 233
TaqI	TCGA	2 cut(s)	493, 576
TasI	AATT	3 cut(s)	177, 428, 436
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	495
TscAI	CASTG	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.