Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

23525727 .. 23526644

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGGCTTTGGCACACCAATGATGTTCGCGCCAAGTCCAAGTTCTGGTATTTCCTGAAGAAGGTGAAGAAGGTGAAGAAGCGCAATGGCCAAATTGTTGCCATCAATGAGGATATTTTCTTTTCCATTTTATCGTTTGAATTCATATTAGGCTCTGTTTATGCAGTATTAGCATCTCCTATTTTGGAGAAGAAACCTACTGTTGTTGAGAACTACAGTATTTGGTTGAGGTATCAAAGCAAGACAGGGTATCACAACATGTACAAGGAGTACCGTGACACCACTTTGAATGGGGCTGTGGATCAGATGTGCACTGAGATGGCTTCTCGCCACAGGGTCAGGTTTCCTTGCATCCAAATCATCGAGACTGCCACGATCCCAGCTAAGCTTTGCAAGAGGGAAAGTACCAAGCAATTCCACAATTCCAAGATCAAGTTTCCATTGAACTCTGATGATGCATTTATGTCAGATTATGTTCGAATCCTCATTTTACTAATCGTGCATTGGACTGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

172

Amino Acids

20.28

Weight (kDa)

9.71

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	78 - 123	7.1e-17	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	45
AccII	CGCG	1 cut(s)	30
AclWI	GGATC	2 cut(s)	309, 370
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	3 cut(s)	263, 272, 406
AfiI	CCNNNNNNNGG	2 cut(s)	45, 61
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	140, 289, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	383, 388
AluI	AGCT	2 cut(s)	383, 388
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	309, 370
AoxI	GGCC	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	140
AspLEI	GCGC	2 cut(s)	32, 84
AsuHPI	GGTGA	2 cut(s)	76, 85
AsuII	TTCGAA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	314
BccI	CCATC	2 cut(s)	110, 313
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	214
BlpI	GCTNAGC	1 cut(s)	384
BmsI	GCATC	3 cut(s)	182, 360, 445
Bpu1102I	GCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 61
Bse3DI	GCAATG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	45, 61
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	45, 61
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	3 cut(s)	301, 375, 429
Bsp1720I	GCTNAGC	1 cut(s)	384
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	30
BspPI	GGATC	2 cut(s)	309, 370
BspT104I	TTCGAA	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	261
BssMI	GATC	3 cut(s)	301, 375, 429
Bst4CI	ACNGT	3 cut(s)	202, 218, 275
BstAUI	TGTACA	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	315, 384
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	351
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	32, 84
BstKTI	GATC	3 cut(s)	304, 378, 432
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	3 cut(s)	301, 375, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	314
BstUI	CGCG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	312
CfoI	GCGC	2 cut(s)	32, 84
Csp6I	GTAC	3 cut(s)	262, 271, 405
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	7 cut(s)	7, 90, 153, 296, 323, 383, 388
CviKI_1	RGCY	7 cut(s)	7, 90, 153, 296, 323, 383, 388
CviQI	GTAC	3 cut(s)	262, 271, 405
DdeI	CTNAG	2 cut(s)	315, 384
DpnI	GATC	3 cut(s)	303, 377, 431
DpnII	GATC	3 cut(s)	301, 375, 429
EaeI	YGGCCR	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	1 cut(s)	262
FaiI	YATR	5 cut(s)	146, 162, 260, 464, 474
FatI	CATG	1 cut(s)	258
FokI	GGATG	1 cut(s)	338
GlaI	GCGC	2 cut(s)	31, 83
GsaI	CCCAGC	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	90
HhaI	GCGC	2 cut(s)	32, 84
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	2 cut(s)	30, 82
HinP1I	GCGC	2 cut(s)	30, 82
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	480
HphI	GGTGA	2 cut(s)	76, 85
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	3 cut(s)	306, 451, 469
Hpy188III	TCNNGA	2 cut(s)	55, 364
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	2 cut(s)	55, 64
HpyCH4III	ACNGT	3 cut(s)	202, 218, 275
HpyCH4V	TGCA	6 cut(s)	164, 312, 351, 393, 458, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	315, 384
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	2 cut(s)	30, 82
Kzo9I	GATC	3 cut(s)	301, 375, 429
LpnPI	CCDG	6 cut(s)	31, 68, 231, 319, 325, 393
LweI	GCATC	3 cut(s)	182, 360, 445
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	3 cut(s)	303, 377, 431
MboI	GATC	3 cut(s)	301, 375, 429
MboII	GAAGA	4 cut(s)	70, 79, 88, 202
MhlI	GDGCHC	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	90
MluCI	AATT	4 cut(s)	93, 140, 413, 421
MluNI	TGGCCA	1 cut(s)	90
MnlI	CCTC	4 cut(s)	103, 222, 390, 494
Mox20I	TGGCCA	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	90
MslI	CAYNNNNRTG	2 cut(s)	18, 317
Msp20I	TGGCCA	1 cut(s)	90
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	3 cut(s)	301, 375, 429
NlaIII	CATG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	478
PciI	ACATGT	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	480
PflMI	CCANNNNNTGG	1 cut(s)	45
PscI	ACATGT	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	379
RsaI	GTAC	3 cut(s)	263, 272, 406
RsaNI	GTAC	3 cut(s)	262, 271, 405
RseI	CAYNNNNRTG	2 cut(s)	18, 317
Sau3AI	GATC	3 cut(s)	301, 375, 429
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	7 cut(s)	66, 75, 199, 233, 344, 385, 390
SfaNI	GCATC	3 cut(s)	182, 360, 445
SfcI	CTRYAG	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	478
SmiMI	CAYNNNNRTG	2 cut(s)	18, 317
Sse9I	AATT	4 cut(s)	93, 140, 413, 421
TaaI	ACNGT	3 cut(s)	202, 218, 275
TaqI	TCGA	2 cut(s)	363, 478
TasI	AATT	4 cut(s)	93, 140, 413, 421
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	480
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	45
VneI	GTGCAC	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	262
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.