Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001523

Physical Location & Seq

Genomic Coordinates Reverse (-)

13235741 .. 13238884

Gene Structure 3144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G34940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCGTCGATGGGACGAGCTCAATGCCTTCTTTCGCAAAACCGGAACTAAAGTCATCTTCGGGCTGAATGCACTTTCTGGACGTTCCATAAAATCTAACGGTGAAGCCATAGGAGCCTGGAATTACACCAATGCTGAATCGTTCATCCGGTTTACAGCAGAGAACAATTACACCATCGACGGGTGGGAGCTCGGCAATGAGCTGTGTGGAAGTGGTGTTGGTGCACGAGTTGGTGCAAATCAATATGCTATAGACACCATAAATCTGCGAAACATTGTGAACCGGGTTTACAAGAATGTGAGTCCCATGCCGTTGGTGATAGGTCCGGGTGGCTTCTTTGAAGTTGATTGGTTCACAGAATACCTGAACAAAGCAGAAAACTCTCTCAATGCTACTACTCGACATATCTACGATCTCGGTCCAGGAGTCGATGAACATCTGATAGAAAAGATTCTAAACCCTTCATATCTGGACCAAGAGGCAAAAAGTTTTCGCAGTCTCAAGAACATAATCAAAAACTCCTCAACAAAGGCTGTGGCATGGGTTGGTGAGTCCGGTGGTGCCTACAACAGTGGGCGGAATCTTGTCTCTAATGCTTTCGTGTATAGTTTCTGGTACCTGGACCAGCTTGGTATGGCATCGCTTTATGATACAAAAACATACTGTAGACAGTCTCTGATCGGAGGAAACTATGGGCTGCTAAATACTACTAACTTCACACCAAATCCAGACTATTACAGTGCTCTGATCTGGCGACAACTTATGGGAAGAAAGGCATTGTTCACAACCTTTTCCGGAACCAAAAAGATACGTTCGTACACCCATTGTGCAAGACAATCGAAAGGGATCACAGTTTTACTGATGAACCTTGACAATACTACAACGGTTGTAGCGAAAGTAGAGTTAAATAACAGTTTCAGTCTGAGACATACAAAGCACATGAAGTCTTATAAAAGAGCAAGTTCCCAACTTTTTGGGGGTCCTAATGGAGTAATCCAAAGAGAAGAGTACCATTTGACAGCAAAGGATGGAAACCTACACAGTCAGACTATGCTACTCAACGGAAATGCTCTTCAGGTTAATTCGATGGGTGATTTACCTCCTATAGAGCCGATACATATAAATTCAACAGAGCCAATAACAATAGCTCCATATTCCATTGTGTTTGTGCATATGCGGAATGTTGTTGTACCTGCATGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

401

Amino Acids

44.74

Weight (kDa)

9.21

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	31 - 346	4.6e-152	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34940 AT5G34940 AT5G34940 AT5G34940
fragaria_vesca	FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_2g28720 FvH4_2g28720 FvH4_2g28730
malus_domestica	MD02G1019000.v1.1 MD15G1128700.v1.1 MD15G1162800.v1.1
prunus_persica	Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1
pyrus_communis	pycom02g01700 pycom15g11580 pycom15g14640
rosa_chinensis	RchiOBHm_Chr2g0087151 RchiOBHm_Chr6g0297501
rosa_laevigata	RLG00000011589 RLG00000015837
rosa_multiflora	Rmu_sc0003367.1_g000005 Rmu_ssc0000239.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153840 Rroxscaffold_7G00170420
rosa_rugosa	Rorug01G0472900 Rorug01G0473000 Rorug06G0272700 Rorug06G0272800
rosa_samantha	Rh2AG026100 Rh2BG026000 Rh2CG026600 Rh2CG372400 Rh2DG026400 Rh6AG384000 Rh6BG103300 Rh6BG114100 Rh6BG392100 Rh6CG112400 Rh6CG398000 Rh6DG384500
rosa_wichuraiana	Rw2G002090 Rw6G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
Acc36I	ACCTGC	1 cut(s)	1201
Acc65I	GGTACC	1 cut(s)	615
AccB1I	GGYRCC	2 cut(s)	560, 615
AccI	GTMKAC	1 cut(s)	667
AccIII	TCCGGA	1 cut(s)	794
AciI	CCGC	2 cut(s)	577, 1177
AclWI	GGATC	1 cut(s)	854
AcsI	RAATTY	1 cut(s)	1123
AcuI	CTGAAG	1 cut(s)	1058
AfaI	GTAC	4 cut(s)	617, 818, 1010, 1191
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	341, 1128
AjnI	CCWGG	3 cut(s)	116, 421, 618
AluBI	AGCT	5 cut(s)	19, 190, 202, 628, 1148
AluI	AGCT	5 cut(s)	19, 190, 202, 628, 1148
Alw21I	GWGCWC	4 cut(s)	21, 192, 226, 745
Alw26I	GTCTC	4 cut(s)	503, 592, 678, 919
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	854
AlwNI	CAGNNNCTG	1 cut(s)	676
Aor13HI	TCCGGA	1 cut(s)	794
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	697
ApoI	RAATTY	1 cut(s)	1123
Asp700I	GAANNNNTTC	1 cut(s)	450
Asp718I	GGTACC	1 cut(s)	615
AspS9I	GGNCC	5 cut(s)	323, 419, 472, 622, 980
AsuC2I	CCSGG	2 cut(s)	284, 327
AsuHPI	GGTGA	4 cut(s)	113, 328, 560, 1103
AvaII	GGWCC	5 cut(s)	323, 419, 472, 622, 980
BaeGI	GKGCMC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	800, 833
BanI	GGYRCC	2 cut(s)	560, 615
BanII	GRGCYC	2 cut(s)	21, 192
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	4 cut(s)	21, 192, 226, 745
BbvI	GCAGC	1 cut(s)	684
BccI	CCATC	4 cut(s)	3, 182, 1022, 1081
BceAI	ACGGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	4 cut(s)	5, 39, 819, 853
BciT130I	CCWGG	3 cut(s)	118, 423, 620
BcnI	CCSGG	2 cut(s)	284, 327
BcoDI	GTCTC	4 cut(s)	503, 592, 678, 919
BfmI	CTRYAG	3 cut(s)	249, 664, 1104
BfuAI	ACCTGC	1 cut(s)	1201
BisI	GCNGC	1 cut(s)	698
BlsI	GCNGC	1 cut(s)	699
Bme1390I	CCNGG	5 cut(s)	118, 284, 327, 423, 620
Bme18I	GGWCC	5 cut(s)	323, 419, 472, 622, 980
BmgT120I	GGNCC	5 cut(s)	323, 419, 472, 622, 980
BmiI	GGNNCC	5 cut(s)	115, 562, 617, 799, 981
BmrFI	CCNGG	5 cut(s)	118, 284, 327, 423, 620
BmsI	GCATC	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	2 cut(s)	284, 327
BsaBI	GATNNNNATC	1 cut(s)	435
BsaWI	WCCGGW	4 cut(s)	41, 147, 554, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	1132, 1162
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	794
BseBI	CCWGG	3 cut(s)	118, 423, 620
BseGI	GGATG	2 cut(s)	144, 1033
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	914
BseRI	GAGGAG	1 cut(s)	511
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	684
BshNI	GGYRCC	2 cut(s)	560, 615
BsiHKAI	GWGCWC	4 cut(s)	21, 192, 226, 745
BsiSI	CCGG	6 cut(s)	42, 148, 283, 326, 555, 795
BslFI	GGGAC	2 cut(s)	26, 288
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	4 cut(s)	503, 592, 678, 919
BsmFI	GGGAC	2 cut(s)	26, 288
BsmI	GAATGC	1 cut(s)	73
Bsp1286I	GDGCHC	4 cut(s)	21, 192, 226, 745
Bsp13I	TCCGGA	1 cut(s)	794
Bsp143I	GATC	4 cut(s)	412, 678, 747, 846
BspACI	CCGC	2 cut(s)	577, 1177
BspCNI	CTCAG	1 cut(s)	915
BspEI	TCCGGA	1 cut(s)	794
BspLI	GGNNCC	5 cut(s)	115, 562, 617, 799, 981
BspMI	ACCTGC	1 cut(s)	1201
BspPI	GGATC	1 cut(s)	854
BspQI	GCTCTTC	1 cut(s)	1077
BspT107I	GGYRCC	2 cut(s)	560, 615
BsrDI	GCAATG	1 cut(s)	202
BssMI	GATC	4 cut(s)	412, 678, 747, 846
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	3 cut(s)	118, 423, 620
Bst4CI	ACNGT	9 cut(s)	101, 572, 665, 672, 740, 853, 886, 914, 1043
Bst6I	CTCTTC	2 cut(s)	999, 1077
BstDEI	CTNAG	1 cut(s)	923
BstF5I	GGATG	2 cut(s)	144, 1033
BstKTI	GATC	4 cut(s)	415, 681, 750, 849
BstMAI	GTCTC	4 cut(s)	503, 592, 678, 919
BstMBI	GATC	4 cut(s)	412, 678, 747, 846
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	3 cut(s)	118, 423, 620
BstNSI	RCATGY	1 cut(s)	1200
BstSCI	CCNGG	5 cut(s)	116, 282, 325, 421, 618
BstSFI	CTRYAG	3 cut(s)	249, 664, 1104
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	684
BstXI	CCANNNNNNTGG	2 cut(s)	313, 974
BtgZI	GCGATG	1 cut(s)	624
BtsCI	GGATG	2 cut(s)	144, 1033
BtsIMutI	CAGTG	2 cut(s)	577, 745
BveI	ACCTGC	1 cut(s)	1201
CaiI	CAGNNNCTG	1 cut(s)	676
Cfr13I	GGNCC	5 cut(s)	323, 419, 472, 622, 980
Csp6I	GTAC	4 cut(s)	616, 817, 1009, 1190
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	4 cut(s)	307, 540, 940, 1197
CviQI	GTAC	4 cut(s)	616, 817, 1009, 1190
DdeI	CTNAG	1 cut(s)	923
DpnI	GATC	4 cut(s)	414, 680, 749, 848
DpnII	GATC	4 cut(s)	412, 678, 747, 846
Eam1104I	CTCTTC	2 cut(s)	999, 1077
EarI	CTCTTC	2 cut(s)	999, 1077
EciI	GGCGGA	1 cut(s)	592
Ecl136II	GAGCTC	2 cut(s)	19, 190
Eco24I	GRGCYC	2 cut(s)	21, 192
Eco47I	GGWCC	5 cut(s)	323, 419, 472, 622, 980
Eco53kI	GAGCTC	2 cut(s)	19, 190
Eco57I	CTGAAG	1 cut(s)	1058
EcoICRI	GAGCTC	2 cut(s)	19, 190
EcoO109I	RGGNCCY	1 cut(s)	980
EcoRII	CCWGG	3 cut(s)	116, 421, 618
EcoT38I	GRGCYC	2 cut(s)	21, 192
FaeI	CATG	4 cut(s)	310, 543, 943, 1200
FaqI	GGGAC	2 cut(s)	26, 288
FatI	CATG	4 cut(s)	306, 539, 939, 1196
FauNDI	CATATG	1 cut(s)	1173
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	1 cut(s)	698
FokI	GGATG	2 cut(s)	131, 1040
FriOI	GRGCYC	2 cut(s)	21, 192
Fsp4HI	GCNGC	1 cut(s)	698
GluI	GCNGC	1 cut(s)	698
HapII	CCGG	6 cut(s)	42, 148, 283, 326, 555, 795
Hin1II	CATG	4 cut(s)	310, 543, 943, 1200
HinfI	GANTC	6 cut(s)	137, 301, 426, 451, 551, 580
HpaII	CCGG	6 cut(s)	42, 148, 283, 326, 555, 795
HphI	GGTGA	4 cut(s)	113, 328, 560, 1103
Hpy166II	GTNNAC	8 cut(s)	153, 224, 280, 289, 354, 668, 783, 819
Hpy188I	TCNGA	6 cut(s)	441, 678, 683, 747, 924, 1047
Hpy188III	TCNNGA	5 cut(s)	78, 470, 502, 728, 795
Hpy8I	GTNNAC	8 cut(s)	153, 224, 280, 289, 354, 668, 783, 819
Hpy99I	CGWCG	2 cut(s)	9, 182
HpyAV	CCTTC	2 cut(s)	37, 471
HpyCH4III	ACNGT	9 cut(s)	101, 572, 665, 672, 740, 853, 886, 914, 1043
HpyCH4IV	ACGT	2 cut(s)	82, 811
HpyCH4V	TGCA	6 cut(s)	71, 224, 236, 830, 1171, 1196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	923
HpySE526I	ACGT	2 cut(s)	82, 811
Hsp92II	CATG	4 cut(s)	310, 543, 943, 1200
Kpn2I	TCCGGA	1 cut(s)	794
KpnI	GGTACC	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	412, 678, 747, 846
LguI	GCTCTTC	1 cut(s)	1077
LmnI	GCTCC	3 cut(s)	113, 187, 1153
Lsp1109I	GCAGC	1 cut(s)	684
LweI	GCATC	1 cut(s)	647
MaeII	ACGT	2 cut(s)	82, 811
MalI	GATC	4 cut(s)	414, 680, 749, 848
MboI	GATC	4 cut(s)	412, 678, 747, 846
MboII	GAAGA	4 cut(s)	49, 780, 1016, 1064
MhlI	GDGCHC	4 cut(s)	21, 192, 226, 745
MluCI	AATT	4 cut(s)	121, 166, 1081, 1123
MlyI	GAGTC	3 cut(s)	310, 435, 560
MnlI	CCTC	4 cut(s)	472, 532, 677, 1110
MroI	TCCGGA	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	3 cut(s)	905, 1080, 1204
MspI	CCGG	6 cut(s)	42, 148, 283, 326, 555, 795
MspR9I	CCNGG	5 cut(s)	118, 284, 327, 423, 620
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	3 cut(s)	118, 423, 620
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	2 cut(s)	284, 327
NdeI	CATATG	1 cut(s)	1173
NdeII	GATC	4 cut(s)	412, 678, 747, 846
NlaIII	CATG	4 cut(s)	310, 543, 943, 1200
NlaIV	GGNNCC	5 cut(s)	115, 562, 617, 799, 981
NmeAIII	GCCGAG	1 cut(s)	171
NspI	RCATGY	1 cut(s)	1200
PciSI	GCTCTTC	1 cut(s)	1077
PcsI	WCGNNNNNNNCGW	1 cut(s)	890
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	137, 451, 580
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	699
PleI	GAGTC	3 cut(s)	309, 434, 559
PpsI	GAGTC	3 cut(s)	309, 434, 559
PpuMI	RGGWCCY	1 cut(s)	980
PsiI	TTATAA	1 cut(s)	951
Psp124BI	GAGCTC	2 cut(s)	21, 192
Psp5II	RGGWCCY	1 cut(s)	980
Psp6I	CCWGG	3 cut(s)	116, 421, 618
PspGI	CCWGG	3 cut(s)	116, 421, 618
PspN4I	GGNNCC	5 cut(s)	115, 562, 617, 799, 981
PspPI	GGNCC	5 cut(s)	323, 419, 472, 622, 980
PspPPI	RGGWCCY	1 cut(s)	980
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
PstNI	CAGNNNCTG	1 cut(s)	676
RsaI	GTAC	4 cut(s)	617, 818, 1010, 1191
RsaNI	GTAC	4 cut(s)	616, 817, 1009, 1190
SacI	GAGCTC	2 cut(s)	21, 192
SapI	GCTCTTC	1 cut(s)	1077
SaqAI	TTAA	3 cut(s)	905, 1080, 1204
SatI	GCNGC	1 cut(s)	698
Sau3AI	GATC	4 cut(s)	412, 678, 747, 846
Sau96I	GGNCC	5 cut(s)	323, 419, 472, 622, 980
SchI	GAGTC	3 cut(s)	310, 435, 560
ScrFI	CCNGG	5 cut(s)	118, 284, 327, 423, 620
SduI	GDGCHC	4 cut(s)	21, 192, 226, 745
SfaNI	GCATC	1 cut(s)	647
SfcI	CTRYAG	3 cut(s)	249, 664, 1104
SinI	GGWCC	5 cut(s)	323, 419, 472, 622, 980
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	4 cut(s)	121, 166, 1081, 1123
SsiI	CCGC	2 cut(s)	577, 1177
SstI	GAGCTC	2 cut(s)	21, 192
StyD4I	CCNGG	5 cut(s)	116, 282, 325, 421, 618
TaaI	ACNGT	9 cut(s)	101, 572, 665, 672, 740, 853, 886, 914, 1043
TaiI	ACGT	2 cut(s)	85, 814
TaqI	TCGA	6 cut(s)	7, 177, 400, 429, 839, 1085
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	4 cut(s)	121, 166, 1081, 1123
TfiI	GAWTC	3 cut(s)	137, 451, 580
Tru1I	TTAA	3 cut(s)	905, 1080, 1204
Tru9I	TTAA	3 cut(s)	905, 1080, 1204
TscAI	CASTG	2 cut(s)	577, 745
TseI	GCWGC	1 cut(s)	697
TspDTI	ATGAA	5 cut(s)	133, 447, 453, 878, 956
TspGWI	ACGGA	1 cut(s)	1077
TspRI	CASTG	2 cut(s)	577, 745
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	5 cut(s)	323, 419, 472, 622, 980
XapI	RAATTY	1 cut(s)	1123
XceI	RCATGY	1 cut(s)	1200
XmiI	GTMKAC	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.