Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001523

Physical Location & Seq

Genomic Coordinates Reverse (-)

17773606 .. 17784620

Gene Structure 11015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG114100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGAGTGAAGAGTATCAGTGTGGCACTGGATATGAAGGCCATTTCTGGGTCGATGGGAAGCGGGTTTGGGCCTGGAAGGATTAGAGGGAGTGGGACGCCGCAGATTGGCTGTGGAGCCGATGCGAGGGATGGACTTTGGAAGAGAATGGGGATGTGTATGGATCAGTTGCATTCTATCATGGTTGCTGTGTGGCATTTGCAGAAGGTGTTGTCCAATAACTGGGGCAAGGCTACTCTTCTTAATTTGGATCTAAGTAATAATGTCTTATCAAATGCCATAAAGGCTTTTTCACCATTGAAACTTAGATTAACAGGGGCTAAGATTATCTTTGGATTAAATGCCTTCCTGGGACGAACTTTACAGAGTGATGGCTCTGCAACTGGATCTTGGAACTTTACCAATGCCGAATCTTTCATTCGCTACAATGTCAAACATAACTACTCTATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG5

Protein Analysis

151

Amino Acids

16.22

Weight (kDa)

10.09

Isoelectric Point (pI)

22.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG5_C	PF20649	3 - 81	5e-09	Conserved oligomeric Golgi complex subunit 5, C-terminal
Glyco_hydro_79n	PF03662	74 - 107	1.6e-08	Glycosyl hydrolase family 79, N-terminal domain
Glyco_hydro_79n	PF03662	105 - 150	7.2e-12	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34940 AT5G34940 AT5G34940 AT5G34940
fragaria_vesca	FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_2g28720 FvH4_2g28720 FvH4_2g28730
malus_domestica	MD02G1019000.v1.1 MD15G1128700.v1.1 MD15G1162800.v1.1
prunus_persica	Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1
pyrus_communis	pycom02g01700 pycom15g11580 pycom15g14640
rosa_chinensis	RchiOBHm_Chr2g0087151 RchiOBHm_Chr6g0297501
rosa_laevigata	RLG00000011589 RLG00000015837
rosa_multiflora	Rmu_sc0003367.1_g000005 Rmu_ssc0000239.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153840 Rroxscaffold_7G00170420
rosa_rugosa	Rorug01G0472900 Rorug01G0473000 Rorug06G0272700 Rorug06G0272800
rosa_samantha	Rh2AG026100 Rh2BG026000 Rh2CG026600 Rh2CG372400 Rh2DG026400 Rh6AG384000 Rh6BG103300 Rh6BG114100 Rh6BG392100 Rh6CG112400 Rh6CG398000 Rh6DG384500
rosa_wichuraiana	Rw2G002090 Rw6G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	222
AciI	CCGC	2 cut(s)	63, 101
AclWI	GGATC	3 cut(s)	171, 258, 394
AcyI	GRCGYC	1 cut(s)	98
AfiI	CCNNNNNNNGG	4 cut(s)	48, 107, 126, 222
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	73, 348
AluBI	AGCT	1 cut(s)	452
AluI	AGCT	1 cut(s)	452
AlwI	GGATC	3 cut(s)	171, 258, 394
AoxI	GGCC	2 cut(s)	39, 71
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	285
BccI	CCATC	3 cut(s)	49, 125, 365
BciT130I	CCWGG	2 cut(s)	75, 350
BfmI	CTRYAG	1 cut(s)	447
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	75, 350
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	2 cut(s)	75, 350
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 107, 126, 222
Bse1I	ACTGG	3 cut(s)	33, 227, 388
BseBI	CCWGG	2 cut(s)	75, 350
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	136, 159
BseLI	CCNNNNNNNGG	4 cut(s)	48, 107, 126, 222
BseNI	ACTGG	3 cut(s)	33, 227, 388
BshFI	GGCC	2 cut(s)	41, 73
BslFI	GGGAC	2 cut(s)	109, 366
BslI	CCNNNNNNNGG	4 cut(s)	48, 107, 126, 222
BsmFI	GGGAC	2 cut(s)	109, 366
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	41, 73
Bsp143I	GATC	3 cut(s)	163, 250, 386
BspACI	CCGC	2 cut(s)	63, 101
BspANI	GGCC	2 cut(s)	41, 73
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	3 cut(s)	171, 258, 394
BsrI	ACTGG	3 cut(s)	33, 227, 388
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	3 cut(s)	163, 250, 386
BssNI	GRCGYC	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	75, 350
Bst6I	CTCTTC	3 cut(s)	5, 137, 243
BstACI	GRCGYC	1 cut(s)	98
BstDEI	CTNAG	3 cut(s)	254, 305, 321
BstF5I	GGATG	2 cut(s)	136, 159
BstKTI	GATC	3 cut(s)	166, 253, 389
BstMBI	GATC	3 cut(s)	163, 250, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	75, 350
BstSCI	CCNGG	2 cut(s)	73, 348
BstSFI	CTRYAG	1 cut(s)	447
BstX2I	RGATCY	2 cut(s)	250, 386
BstYI	RGATCY	2 cut(s)	250, 386
BsuRI	GGCC	2 cut(s)	41, 73
BtsCI	GGATG	2 cut(s)	136, 159
BtsIMutI	CAGTG	2 cut(s)	25, 26
Cfr13I	GGNCC	1 cut(s)	71
CseI	GACGC	1 cut(s)	106
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	9 cut(s)	41, 73, 111, 119, 233, 287, 320, 375, 452
CviKI_1	RGCY	9 cut(s)	41, 73, 111, 119, 233, 287, 320, 375, 452
DdeI	CTNAG	3 cut(s)	254, 305, 321
DpnI	GATC	3 cut(s)	165, 252, 388
DpnII	GATC	3 cut(s)	163, 250, 386
Eam1104I	CTCTTC	3 cut(s)	5, 137, 243
EarI	CTCTTC	3 cut(s)	5, 137, 243
EcoRII	CCWGG	2 cut(s)	73, 348
FaeI	CATG	1 cut(s)	184
FaiI	YATR	6 cut(s)	35, 161, 182, 281, 438, 449
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	109, 366
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	143, 166
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	41, 73
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	1 cut(s)	410
HphI	GGTGA	1 cut(s)	285
HpyAV	CCTTC	4 cut(s)	31, 72, 199, 355
HpyCH4V	TGCA	3 cut(s)	172, 202, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	3 cut(s)	254, 305, 321
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	163, 250, 386
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	9 cut(s)	14, 33, 60, 87, 208, 300, 335, 362, 369
LweI	GCATC	1 cut(s)	112
MalI	GATC	3 cut(s)	165, 252, 388
MboI	GATC	3 cut(s)	163, 250, 386
MboII	GAAGA	3 cut(s)	22, 154, 230
MflI	RGATCY	2 cut(s)	250, 386
MluCI	AATT	1 cut(s)	244
MnlI	CCTC	2 cut(s)	80, 120
MseI	TTAA	3 cut(s)	243, 311, 338
MspR9I	CCNGG	2 cut(s)	75, 350
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	2 cut(s)	75, 350
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	3 cut(s)	163, 250, 386
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	410
PflMI	CCANNNNNTGG	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	73, 348
PspGI	CCWGG	2 cut(s)	73, 348
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	250, 386
SaqAI	TTAA	3 cut(s)	243, 311, 338
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	3 cut(s)	163, 250, 386
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	75, 350
SetI	ASST	2 cut(s)	210, 454
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	447
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	2 cut(s)	63, 101
StyD4I	CCNGG	2 cut(s)	73, 348
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	244
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	3 cut(s)	243, 311, 338
Tru9I	TTAA	3 cut(s)	243, 311, 338
TscAI	CASTG	2 cut(s)	25, 33
TspDTI	ATGAA	2 cut(s)	50, 406
TspRI	CASTG	2 cut(s)	25, 33
Van91I	CCANNNNNTGG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.