Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001523

Physical Location & Seq

Genomic Coordinates Forward (+)

1015825 .. 1017161

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGTTCTGATATCTTGCAAATGGGATTCATTTTCTGGGTTTCTTTTAGTTTCTTGGTTTGTACTGTAAATTCGAAGGTGGGGTTTGGAGGAGGAGGTGTGGAAGGTACAGTCCGCATCAATGGCAGAGACGCCATTGCCAAAATCGACGACGATTTTATTTGTGCAACTCTTGATTGGTGGCCACCTGAGAAATGCGACTATGGTACATGCAGCTGGGGTCGTGCTTCTCTCCTCAATCTGGATCTAAACAACACTATCTTGTTAAATGCTATAAAGGCTTTCTCACCATTGAAACTTAGATTGGGTGGCACATTGCAAGATAAGGTGATATATGCTACACCAGATAACAAGCAAAGCTGTGATGCTTTTCAAAAAAGCACTTCTGAGATGTTTGGTTTCACTCAGGGCTGCTTGCCTATGAATAGATGGGATGAATTAAGCTCCTTTTTTCAGAAAGCAGGGGCTAAGATTATCTTCGGATTAAATGCTCTCACCGGACGAGCAATTAATTCGAACGGTACTGCAACTGGAGATTGGGACTACACCAATTCGGAGTCTTTCATCCGTTACAGCGTAAAAAACAACTACACCGTACATGGTTGGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

205

Amino Acids

22.57

Weight (kDa)

5.82

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34940 AT5G34940 AT5G34940 AT5G34940
fragaria_vesca	FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_2g28720 FvH4_2g28720 FvH4_2g28730
malus_domestica	MD02G1019000.v1.1 MD15G1128700.v1.1 MD15G1162800.v1.1
prunus_persica	Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1
pyrus_communis	pycom02g01700 pycom15g11580 pycom15g14640
rosa_chinensis	RchiOBHm_Chr2g0087151 RchiOBHm_Chr6g0297501
rosa_laevigata	RLG00000011589 RLG00000015837
rosa_multiflora	Rmu_sc0003367.1_g000005 Rmu_ssc0000239.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153840 Rroxscaffold_7G00170420
rosa_rugosa	Rorug01G0472900 Rorug01G0473000 Rorug06G0272700 Rorug06G0272800
rosa_samantha	Rh2AG026100 Rh2BG026000 Rh2CG026600 Rh2CG372400 Rh2DG026400 Rh6AG384000 Rh6BG103300 Rh6BG114100 Rh6BG392100 Rh6CG112400 Rh6CG398000 Rh6DG384500
rosa_wichuraiana	Rw2G002090 Rw6G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	5 cut(s)	64, 109, 208, 523, 597
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	295, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	3 cut(s)	216, 360, 444
AluI	AGCT	3 cut(s)	216, 360, 444
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	213, 411
ApoI	RAATTY	1 cut(s)	70
AseI	ATTAAT	1 cut(s)	510
AsuHPI	GGTGA	3 cut(s)	279, 340, 487
AsuII	TTCGAA	2 cut(s)	74, 515
BalI	TGGCCA	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	225, 398
BccI	CCATC	1 cut(s)	423
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BcoDI	GTCTC	1 cut(s)	123
BisI	GCNGC	2 cut(s)	214, 412
BlsI	GCNGC	2 cut(s)	215, 413
BmsI	GCATC	2 cut(s)	126, 355
BpmI	CTGGAG	1 cut(s)	552
Bpu14I	TTCGAA	2 cut(s)	74, 515
BsaHI	GRCGYC	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	2 cut(s)	135, 314
BseGI	GGATG	2 cut(s)	439, 564
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	2 cut(s)	135, 314
BseMII	CTCAG	3 cut(s)	180, 378, 419
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	3 cut(s)	105, 108, 224
BseXI	GCAGC	2 cut(s)	225, 398
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	498
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	184
Bsp119I	TTCGAA	2 cut(s)	74, 515
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	3 cut(s)	181, 379, 418
BspPI	GGATC	1 cut(s)	252
BspT104I	TTCGAA	2 cut(s)	74, 515
BsrDI	GCAATG	2 cut(s)	135, 314
BsrI	ACTGG	1 cut(s)	535
BssMI	GATC	1 cut(s)	244
BssNI	GRCGYC	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	67, 112, 521, 595
BstACI	GRCGYC	1 cut(s)	132
BstBI	TTCGAA	2 cut(s)	74, 515
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	5 cut(s)	189, 299, 387, 405, 468
BstF5I	GGATG	2 cut(s)	439, 564
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 278
BstNSI	RCATGY	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	225, 398
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	439, 564
Cac8I	GCNNGC	1 cut(s)	416
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	5 cut(s)	63, 108, 207, 522, 596
CviAII	CATG	2 cut(s)	210, 599
CviJI	RGCY	7 cut(s)	184, 216, 281, 360, 411, 444, 467
CviKI_1	RGCY	7 cut(s)	184, 216, 281, 360, 411, 444, 467
CviQI	GTAC	5 cut(s)	63, 108, 207, 522, 596
DdeI	CTNAG	5 cut(s)	189, 299, 387, 405, 468
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	2 cut(s)	213, 602
FaiI	YATR	7 cut(s)	204, 211, 275, 334, 336, 422, 600
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	2 cut(s)	209, 598
Fnu4HI	GCNGC	2 cut(s)	214, 412
FokI	GGATG	2 cut(s)	446, 551
Fsp4HI	GCNGC	2 cut(s)	214, 412
GluI	GCNGC	2 cut(s)	214, 412
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	498
HgaI	GACGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	213, 602
HinfI	GANTC	2 cut(s)	27, 557
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	3 cut(s)	279, 340, 487
Hpy188I	TCNGA	5 cut(s)	10, 388, 456, 482, 556
Hpy188III	TCNNGA	2 cut(s)	173, 242
Hpy99I	CGWCG	2 cut(s)	152, 155
HpyAV	CCTTC	2 cut(s)	70, 98
HpyCH4III	ACNGT	4 cut(s)	67, 112, 521, 595
HpyCH4V	TGCA	5 cut(s)	19, 167, 213, 319, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 278
HpyF3I	CTNAG	5 cut(s)	189, 299, 387, 405, 468
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	213, 602
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	9 cut(s)	22, 201, 202, 227, 357, 392, 447, 511, 516
Lsp1109I	GCAGC	2 cut(s)	225, 398
LweI	GCATC	2 cut(s)	126, 355
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	469
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	5 cut(s)	70, 437, 507, 511, 550
MluNI	TGGCCA	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	4 cut(s)	83, 86, 89, 245
Mox20I	TGGCCA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	4 cut(s)	266, 440, 485, 510
Msp20I	TGGCCA	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	123, 278
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	213, 602
NspI	RCATGY	1 cut(s)	213
NspV	TTCGAA	2 cut(s)	74, 515
PfeI	GAWTC	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	215, 413
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PshBI	ATTAAT	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	5 cut(s)	64, 109, 208, 523, 597
RsaNI	GTAC	5 cut(s)	63, 108, 207, 522, 596
SaqAI	TTAA	4 cut(s)	266, 440, 485, 510
SatI	GCNGC	2 cut(s)	214, 412
Sau3AI	GATC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	566
SetI	ASST	8 cut(s)	81, 100, 109, 190, 218, 330, 362, 446
SfaNI	GCATC	2 cut(s)	126, 355
SfuI	TTCGAA	2 cut(s)	74, 515
Sse9I	AATT	5 cut(s)	70, 437, 507, 511, 550
SsiI	CCGC	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	67, 112, 521, 595
TaqI	TCGA	3 cut(s)	74, 147, 515
TasI	AATT	5 cut(s)	70, 437, 507, 511, 550
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	4 cut(s)	266, 440, 485, 510
Tru9I	TTAA	4 cut(s)	266, 440, 485, 510
TseI	GCWGC	2 cut(s)	213, 411
TspDTI	ATGAA	4 cut(s)	19, 437, 450, 553
TspGWI	ACGGA	1 cut(s)	557
VspI	ATTAAT	1 cut(s)	510
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.