Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001523

Physical Location & Seq

Genomic Coordinates Reverse (-)

56404761 .. 56406330

Gene Structure 1570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0473000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGTTGAGCACCCAAGTTGGAGCCTCATCGGGTTCAGCTTTCCCGTGGAAATACGACGTGTTTTTGAGCTTCCGAGGTGAAGACACCCGCAAGGGATTCACAGACTACTTATACCACGAGTTGCAGCGGCAAGGAATCAAGACTTTCAGGGACGATCCACAGCTTGAAAGAGGCACAGCCATCTCTCCGGAGCTGCTCACAGCAATAGAGCAATCGAGGTTTTCGATCGTTGTTCTTTCGCCAAAATATGCTACTTCCACGTGGTGCTTGCTTGAACTGTCTAAGATTCTTGAATGCATGGAGGAGAGGGGAACAATTCTGCCAATCTTTTATGAGGTGGATCCCTCTCATGTGAGAAATTTAAGGGGCAGCTTTGCTGAAGCGTTTCAAGAACATGAAGAGAAGTTTGGGGAAGGTAATAAGGAGGTGGAAGGGTGGAGAGATGTTTTAACCAAAGTGGCCAGTCTCGCTGGATGGACTTCAAAGGATTATAGGTATGAAACAGAGCTTATCAGAGAGATTGTGCAAGCACTGTGGAGCAAAGTGTATCCTAGTCTCGCTGTATTTGATTCCTCAGAGAAGTTAGTGGGAATGGATACTAAGCTGAAGGAAATAGATGTTCTTTTAGATAAAGAAGCAAATGATGTTCGCTTTATAGGGATATGGGGGATGGGTGGTATCGGTAAGACAACCCTTGCTAGACTAGTTTATGGGAAAATCTCACATCAATTTGATGTTTGCATCTTTCTTGATGATGTCAGAAAGGTTTCCACAACCCATGATCTAGCTGATCTACAAAAACGAATTCGTTCCCAAATCTTGAAGGAAGAAGATGTTCAAGTAGGGGATGTTTATAGTGGAATGGCTATGATAAAGAGATGTTTTTGTAATAAAGCTGTTCTTCTAGTTCTTGACAATATGGATCAATCAGAGCAACTGAAAAACTTGGTAGGAGAAAAAGACTGGTTTGGTTTAAGGAGTAGAATCATCATTACAACTAGAAACCAGCGTGTACTAGTCACACTTGGTGTAGAAAAACCATTTGAATTGAAGGGATTAAATGAAGATGAAGCTCTTCAGCTCTTTAGTTGGGAAGCCTTTAAGAAATATGAGCCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

374

Amino Acids

42.83

Weight (kDa)

5.36

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	18 - 192	1.6e-54	TIR domain
TIR_2	PF13676	21 - 117	1.4e-16	TIR domain
NB-ARC	PF00931	203 - 370	7.4e-23	NB-ARC domain
NACHT	PF05729	222 - 364	8.7e-06	NACHT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34940 AT5G34940 AT5G34940 AT5G34940
fragaria_vesca	FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_2g28720 FvH4_2g28720 FvH4_2g28730
malus_domestica	MD02G1019000.v1.1 MD15G1128700.v1.1 MD15G1162800.v1.1
prunus_persica	Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1
pyrus_communis	pycom02g01700 pycom15g11580 pycom15g14640
rosa_chinensis	RchiOBHm_Chr2g0087151 RchiOBHm_Chr6g0297501
rosa_laevigata	RLG00000011589 RLG00000015837
rosa_multiflora	Rmu_sc0003367.1_g000005 Rmu_ssc0000239.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153840 Rroxscaffold_7G00170420
rosa_rugosa	Rorug01G0472900 Rorug01G0473000 Rorug06G0272700 Rorug06G0272800
rosa_samantha	Rh2AG026100 Rh2BG026000 Rh2CG026600 Rh2CG372400 Rh2DG026400 Rh6AG384000 Rh6BG103300 Rh6BG114100 Rh6BG392100 Rh6CG112400 Rh6CG398000 Rh6DG384500
rosa_wichuraiana	Rw2G002090 Rw6G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	2 cut(s)	91, 130
AclWI	GGATC	4 cut(s)	152, 338, 351, 933
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	2 cut(s)	361, 807
AcuI	CTGAAG	3 cut(s)	402, 629, 1064
AcvI	CACGTG	1 cut(s)	264
AdeI	CACNNNGTG	2 cut(s)	267, 1031
AfaI	GTAC	1 cut(s)	1017
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	9 cut(s)	170, 278, 296, 392, 486, 826, 842, 1049, 1054
AhlI	ACTAGT	2 cut(s)	706, 1018
AjiI	CACGTC	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	473, 563
AlwI	GGATC	4 cut(s)	152, 338, 351, 933
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	3 cut(s)	127, 196, 372
ApoI	RAATTY	2 cut(s)	361, 807
Asp700I	GAANNNNTTC	5 cut(s)	387, 769, 811, 837, 1077
AsuHPI	GGTGA	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	119
BbrPI	CACGTG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	139, 183, 384
BccI	CCATC	3 cut(s)	191, 471, 667
BciVI	GTATCC	2 cut(s)	561, 592
BcoDI	GTCTC	2 cut(s)	473, 563
BcuI	ACTAGT	2 cut(s)	706, 1018
BfaI	CTAG	7 cut(s)	555, 702, 707, 788, 908, 1002, 1019
BfuI	GTATCC	2 cut(s)	561, 592
BisI	GCNGC	4 cut(s)	128, 131, 197, 373
BlsI	GCNGC	4 cut(s)	129, 132, 198, 374
BmgBI	CACGTC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	25, 345
BmsI	GCATC	1 cut(s)	753
BpiI	GAAGAC	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	47, 76
BsaWI	WCCGGW	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	465, 971
BseAI	TCCGGA	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	47, 76
BseGI	GGATG	3 cut(s)	482, 678, 856
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	465, 971
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	3 cut(s)	139, 183, 384
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	473, 563
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	6 cut(s)	157, 228, 343, 784, 793, 925
BspACI	CCGC	2 cut(s)	91, 130
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	1 cut(s)	590
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	25, 345
BspPI	GGATC	4 cut(s)	152, 338, 351, 933
BspQI	GCTCTTC	1 cut(s)	1083
BsrI	ACTGG	2 cut(s)	465, 971
BssECI	CCNNGG	2 cut(s)	47, 76
BssMI	GATC	6 cut(s)	157, 228, 343, 784, 793, 925
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	282, 537
Bst6I	CTCTTC	2 cut(s)	396, 1083
BstBAI	YACGTR	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	272, 531
BstDEI	CTNAG	3 cut(s)	285, 577, 603
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	482, 678, 856
BstKTI	GATC	6 cut(s)	160, 231, 346, 787, 796, 928
BstMAI	GTCTC	2 cut(s)	473, 563
BstMBI	GATC	6 cut(s)	157, 228, 343, 784, 793, 925
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	139, 183, 384
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuI	GTATCC	2 cut(s)	561, 592
BsuRI	GGCC	1 cut(s)	464
BtgI	CCRYGG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	482, 678, 856
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	2 cut(s)	272, 531
Csp6I	GTAC	1 cut(s)	1016
CspCI	CAANNNNNGTGG	2 cut(s)	518, 553
CviAII	CATG	4 cut(s)	301, 353, 398, 782
CviQI	GTAC	1 cut(s)	1016
DdeI	CTNAG	3 cut(s)	285, 577, 603
DpnI	GATC	6 cut(s)	159, 230, 345, 786, 795, 927
DpnII	GATC	6 cut(s)	157, 228, 343, 784, 793, 925
DraIII	CACNNNGTG	2 cut(s)	267, 1031
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	396, 1083
EarI	CTCTTC	2 cut(s)	396, 1083
Eco57I	CTGAAG	3 cut(s)	402, 629, 1064
Eco72I	CACGTG	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	807
EcoT22I	ATGCAT	1 cut(s)	302
FaeI	CATG	4 cut(s)	304, 356, 401, 785
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	4 cut(s)	300, 352, 397, 781
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	4 cut(s)	128, 131, 197, 373
FokI	GGATG	3 cut(s)	489, 685, 863
Fsp4HI	GCNGC	4 cut(s)	128, 131, 197, 373
FspBI	CTAG	7 cut(s)	555, 702, 707, 788, 908, 1002, 1019
GluI	GCNGC	4 cut(s)	128, 131, 197, 373
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	4 cut(s)	304, 356, 401, 785
HinfI	GANTC	5 cut(s)	99, 138, 289, 572, 987
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	1016
Hpy188I	TCNGA	5 cut(s)	77, 518, 580, 764, 934
Hpy188III	TCNNGA	7 cut(s)	142, 191, 293, 392, 752, 823, 914
Hpy8I	GTNNAC	1 cut(s)	1016
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	5 cut(s)	410, 428, 604, 820, 1048
HpyCH4III	ACNGT	2 cut(s)	282, 537
HpyCH4IV	ACGT	2 cut(s)	60, 263
HpyCH4V	TGCA	4 cut(s)	127, 300, 529, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	3 cut(s)	285, 577, 603
HpySE526I	ACGT	2 cut(s)	60, 263
Hsp92II	CATG	4 cut(s)	304, 356, 401, 785
Kpn2I	TCCGGA	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	157, 228, 343, 784, 793, 925
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	3 cut(s)	23, 193, 540
LpnPI	CCDG	6 cut(s)	136, 204, 459, 478, 952, 1022
Lsp1109I	GCAGC	3 cut(s)	139, 183, 384
LweI	GCATC	1 cut(s)	753
MaeI	CTAG	7 cut(s)	555, 702, 707, 788, 908, 1002, 1019
MaeII	ACGT	2 cut(s)	60, 263
MaeIII	GTNAC	1 cut(s)	1021
MalI	GATC	6 cut(s)	159, 230, 345, 786, 795, 927
MboI	GATC	6 cut(s)	157, 228, 343, 784, 793, 925
MboII	GAAGA	7 cut(s)	95, 413, 842, 845, 896, 1070, 1079
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	5 cut(s)	318, 361, 731, 807, 1049
MluNI	TGGCCA	1 cut(s)	464
Mox20I	TGGCCA	1 cut(s)	464
Mph1103I	ATGCAT	1 cut(s)	302
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	5 cut(s)	387, 769, 811, 837, 1077
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	5 cut(s)	365, 452, 977, 1061, 1104
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	6 cut(s)	157, 228, 343, 784, 793, 925
NlaIII	CATG	4 cut(s)	304, 356, 401, 785
NlaIV	GGNNCC	2 cut(s)	25, 345
NmuCI	GTSAC	1 cut(s)	1021
NsiI	ATGCAT	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	1083
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	5 cut(s)	387, 769, 811, 837, 1077
PfeI	GAWTC	5 cut(s)	99, 138, 289, 572, 987
PkrI	GCNGC	4 cut(s)	129, 132, 198, 374
Ple19I	CGATCG	1 cut(s)	231
PmaCI	CACGTG	1 cut(s)	264
PmlI	CACGTG	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	264
PspCI	CACGTG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	25, 345
PsuI	RGATCY	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	1 cut(s)	1017
RsaNI	GTAC	1 cut(s)	1016
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	5 cut(s)	365, 452, 977, 1061, 1104
SatI	GCNGC	4 cut(s)	128, 131, 197, 373
Sau3AI	GATC	6 cut(s)	157, 228, 343, 784, 793, 925
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	753
SpeI	ACTAGT	2 cut(s)	706, 1018
Sse9I	AATT	5 cut(s)	318, 361, 731, 807, 1049
SsiI	CCGC	2 cut(s)	91, 130
SspMI	CTAG	7 cut(s)	555, 702, 707, 788, 908, 1002, 1019
TaaI	ACNGT	2 cut(s)	282, 537
TaiI	ACGT	2 cut(s)	63, 266
TaqI	TCGA	2 cut(s)	218, 227
TasI	AATT	5 cut(s)	318, 361, 731, 807, 1049
TatI	WGTACW	1 cut(s)	1015
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	5 cut(s)	99, 138, 289, 572, 987
Tru1I	TTAA	5 cut(s)	365, 452, 977, 1061, 1104
Tru9I	TTAA	5 cut(s)	365, 452, 977, 1061, 1104
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	3 cut(s)	127, 196, 372
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	4 cut(s)	414, 516, 1080, 1086
TspRI	CASTG	1 cut(s)	540
XapI	RAATTY	2 cut(s)	361, 807
XmnI	GAANNNNTTC	5 cut(s)	387, 769, 811, 837, 1077
XspI	CTAG	7 cut(s)	555, 702, 707, 788, 908, 1002, 1019
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.