Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003367.1

Orthogroup ID

OG0001523

Physical Location & Seq

Genomic Coordinates Forward (+)

22328 .. 24996

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003367.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

atggattctcaaatctggagaacagggatgtgtttctgggtgtgtttgtttggtttcttgagcttcattcattgtgtgaattcagaaggagagggaataggaggaggtagtactgaaggtttggttagaattgatgggaaagaacccattgggaaaattgatgaagattttgtttgtgcaactttggattggtggcctcctgagaaatgtgactatggaacttgcagctggggcaaggcttctctccttaatctggatctaagtaacactatcttatcaaatgctataaaggctatgtttggatttaataaggggtgcttacccatgaagagatgggatgaattaaactccttttttctgagaacaggggctaagattatctttggattaaatgccctccccggacgaactttacagagtgatggctctgcaactggagcttgggactttaccaatgccgaatctttcattcagtacactgtcaaacagaactactctatagctggatgggagctagggaatgagctatgtgggcgtggagttggaacagcagtagcagcaagtcagtatgtcaatgatacagcttctctgcataagatagtacagaatgtatacaagggtgttggaccaaagccactaatcttgtcacccggagggttctttgatgcaccttggttcaaagaacttgcagataaaaccaccacttcattagatgcggtcactcaccatatatataatctagggccaggggttgatcaacaccttattgaaaagattcttgatccggcgtatctggatggtattgctaacacatttagcagccttcgaaacatcctaaagacctctgcaacttcagcaagtgcatgggttggggaagcaggaggtgcttataacagcggtcatcatcttgtcacggatgcatttgtgttcagtttctggtatttggatcagcttggtatgtctgcatcttatgataccaaaacatattgcagacagacattgattggtggaaactatggttttctcaacactactacctttgttcccaatccagactactacagcgctcttctttggcaccgattaatgggaagaaatgtactgtcaacgaggtttgctggacccaaaaagatacgtgcttatacacactgtgcaaaacaatctaaagggattgtagtactattgatcaacctacacaacaccaccattgttcaggccaaggttgccttcaacagtacctggagtttgcgacatagacacaaatctcacaagtctcatagatcacatatgctgaagaagcaccatagcggtctaagaagctcaacagaaagagtgagaggtgatacagaaagagaagaataccatttgacaccaaaggatggaaatatacaaagccaaaccatgctgcttaatggaaacgctttgaatgtggattcatctgggaacatacctacattagaacctatttttgtaaattcatcgcaaccgataattgttgctccattttcaattgtatttgttcacataccatacgttgttccccctgcttgcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

518

Amino Acids

57.21

Weight (kDa)

8.51

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34940 AT5G34940 AT5G34940 AT5G34940
fragaria_vesca	FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_2g28720 FvH4_2g28720 FvH4_2g28730
malus_domestica	MD02G1019000.v1.1 MD15G1128700.v1.1 MD15G1162800.v1.1
prunus_persica	Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1
pyrus_communis	pycom02g01700 pycom15g11580 pycom15g14640
rosa_chinensis	RchiOBHm_Chr2g0087151 RchiOBHm_Chr6g0297501
rosa_laevigata	RLG00000011589 RLG00000015837
rosa_multiflora	Rmu_sc0003367.1_g000005 Rmu_ssc0000239.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153840 Rroxscaffold_7G00170420
rosa_rugosa	Rorug01G0472900 Rorug01G0473000 Rorug06G0272700 Rorug06G0272800
rosa_samantha	Rh2AG026100 Rh2BG026000 Rh2CG026600 Rh2CG372400 Rh2DG026400 Rh6AG384000 Rh6BG103300 Rh6BG114100 Rh6BG392100 Rh6CG112400 Rh6CG398000 Rh6DG384500
rosa_wichuraiana	Rw2G002090 Rw6G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	891
Acc36I	ACCTGC	1 cut(s)	1542
AccB1I	GGYRCC	1 cut(s)	1077
AccB7I	CCANNNNNTGG	1 cut(s)	1379
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	3 cut(s)	716, 897, 1308
AclWI	GGATC	3 cut(s)	264, 776, 954
AcsI	RAATTY	2 cut(s)	79, 1474
AcuI	CTGAAG	3 cut(s)	135, 837, 1313
AdeI	CACNNNGTG	1 cut(s)	1151
AfaI	GTAC	6 cut(s)	112, 476, 603, 1101, 1179, 1237
AfeI	AGCGCT	1 cut(s)	1066
AfiI	CCNNNNNNNGG	3 cut(s)	253, 1087, 1379
AgsI	TTSAA	5 cut(s)	679, 770, 1231, 1426, 1509
AjnI	CCWGG	2 cut(s)	745, 1238
AjuI	GAANNNNNNNTTGG	2 cut(s)	1211, 1243
AluBI	AGCT	9 cut(s)	63, 228, 440, 503, 514, 526, 584, 952, 1320
AluI	AGCT	9 cut(s)	63, 228, 440, 503, 514, 526, 584, 952, 1320
Alw26I	GTCTC	1 cut(s)	1278
AlwI	GGATC	3 cut(s)	264, 776, 954
AlwNI	CAGNNNCTG	2 cut(s)	936, 1239
Aor51HI	AGCGCT	1 cut(s)	1066
AoxI	GGCC	3 cut(s)	194, 743, 1215
ApeKI	GCWGC	4 cut(s)	225, 557, 819, 1405
ApoI	RAATTY	2 cut(s)	79, 1474
AseI	ATTAAT	1 cut(s)	1085
Asp700I	GAANNNNTTC	1 cut(s)	774
AspLEI	GCGC	1 cut(s)	1067
AspS9I	GGNCC	3 cut(s)	626, 743, 1121
AsuC2I	CCSGG	2 cut(s)	402, 651
AsuHPI	GGTGA	3 cut(s)	639, 716, 1352
AsuII	TTCGAA	1 cut(s)	826
AvaII	GGWCC	2 cut(s)	626, 1121
BanI	GGYRCC	1 cut(s)	1077
BbvI	GCAGC	4 cut(s)	237, 569, 831, 1392
BccI	CCATC	6 cut(s)	128, 327, 416, 501, 791, 1373
BciT130I	CCWGG	2 cut(s)	747, 1240
BclI	TGATCA	2 cut(s)	754, 1185
BcnI	CCSGG	2 cut(s)	402, 651
BcoDI	GTCTC	1 cut(s)	1278
BfaI	CTAG	2 cut(s)	515, 740
BfmI	CTRYAG	2 cut(s)	498, 1060
BfoI	RGCGCY	1 cut(s)	1068
BfuAI	ACCTGC	1 cut(s)	1542
BisI	GCNGC	4 cut(s)	226, 558, 820, 1406
BlsI	GCNGC	4 cut(s)	227, 559, 821, 1407
BmcAI	AGTACT	2 cut(s)	112, 1179
Bme1390I	CCNGG	4 cut(s)	402, 651, 747, 1240
Bme18I	GGWCC	2 cut(s)	626, 1121
BmgT120I	GGNCC	3 cut(s)	626, 743, 1121
BmiI	GGNNCC	2 cut(s)	1079, 1123
BmrFI	CCNGG	4 cut(s)	402, 651, 747, 1240
BmsI	GCATC	4 cut(s)	655, 703, 907, 974
BpmI	CTGGAG	3 cut(s)	37, 456, 1261
Bpu14I	TTCGAA	1 cut(s)	826
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	2 cut(s)	402, 651
BsaAI	YACGTR	1 cut(s)	1136
BsaJI	CCNNGG	4 cut(s)	400, 671, 746, 1218
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 1087, 1379
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	747, 1240
BseDI	CCNNGG	4 cut(s)	400, 671, 746, 1218
BseGI	GGATG	7 cut(s)	33, 343, 512, 802, 831, 922, 1384
BseLI	CCNNNNNNNGG	3 cut(s)	253, 1087, 1379
BseMII	CTCAG	2 cut(s)	192, 350
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	4 cut(s)	237, 569, 831, 1392
BseYI	CCCAGC	1 cut(s)	228
BshFI	GGCC	3 cut(s)	196, 745, 1217
BshNI	GGYRCC	1 cut(s)	1077
BsiSI	CCGG	3 cut(s)	402, 651, 785
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	253, 1087, 1379
BsmAI	GTCTC	1 cut(s)	1278
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	196, 745, 1217
Bsp119I	TTCGAA	1 cut(s)	826
Bsp143I	GATC	6 cut(s)	256, 754, 781, 946, 1185, 1280
BspACI	CCGC	3 cut(s)	716, 897, 1308
BspANI	GGCC	3 cut(s)	196, 745, 1217
BspCNI	CTCAG	2 cut(s)	193, 351
BspLI	GGNNCC	2 cut(s)	1079, 1123
BspMI	ACCTGC	1 cut(s)	1542
BspPI	GGATC	3 cut(s)	264, 776, 954
BspQI	GCTCTTC	1 cut(s)	1074
BspT104I	TTCGAA	1 cut(s)	826
BspT107I	GGYRCC	1 cut(s)	1077
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	4 cut(s)	400, 671, 746, 1218
BssMI	GATC	6 cut(s)	256, 754, 781, 946, 1185, 1280
BssNAI	GTATAC	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	671, 1218
Bst1107I	GTATAC	1 cut(s)	613
Bst2UI	CCWGG	2 cut(s)	747, 1240
Bst4CI	ACNGT	4 cut(s)	481, 1104, 1151, 1235
Bst6I	CTCTTC	2 cut(s)	323, 1074
BstAPI	GCANNNNNTGC	1 cut(s)	884
BstBAI	YACGTR	1 cut(s)	1136
BstBI	TTCGAA	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	1549
BstDEI	CTNAG	5 cut(s)	201, 260, 359, 372, 1313
BstF5I	GGATG	7 cut(s)	33, 343, 512, 802, 831, 922, 1384
BstH2I	RGCGCY	1 cut(s)	1068
BstHHI	GCGC	1 cut(s)	1067
BstKTI	GATC	6 cut(s)	259, 757, 784, 949, 1188, 1283
BstMAI	GTCTC	1 cut(s)	1278
BstMBI	GATC	6 cut(s)	256, 754, 781, 946, 1185, 1280
BstMWI	GCNNNNNNNGC	9 cut(s)	231, 290, 437, 532, 557, 854, 884, 1223, 1297
BstNI	CCWGG	2 cut(s)	747, 1240
BstSCI	CCNGG	4 cut(s)	400, 649, 745, 1238
BstSFI	CTRYAG	2 cut(s)	498, 1060
BstV1I	GCAGC	4 cut(s)	237, 569, 831, 1392
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZ17I	GTATAC	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	196, 745, 1217
BtgZI	GCGATG	1 cut(s)	1464
BtsCI	GGATG	7 cut(s)	33, 343, 512, 802, 831, 922, 1384
BtsIMutI	CAGTG	2 cut(s)	477, 1147
BveI	ACCTGC	1 cut(s)	1542
Cac8I	GCNNGC	1 cut(s)	1549
CaiI	CAGNNNCTG	2 cut(s)	936, 1239
CfoI	GCGC	1 cut(s)	1067
Cfr13I	GGNCC	3 cut(s)	626, 743, 1121
Csp6I	GTAC	6 cut(s)	111, 475, 602, 1100, 1178, 1236
CspCI	CAANNNNNGTGG	2 cut(s)	624, 659
CviAII	CATG	3 cut(s)	325, 864, 1402
CviQI	GTAC	6 cut(s)	111, 475, 602, 1100, 1178, 1236
DdeI	CTNAG	5 cut(s)	201, 260, 359, 372, 1313
DpnI	GATC	6 cut(s)	258, 756, 783, 948, 1187, 1282
DpnII	GATC	6 cut(s)	256, 754, 781, 946, 1185, 1280
DraIII	CACNNNGTG	1 cut(s)	1151
Eam1104I	CTCTTC	2 cut(s)	323, 1074
EarI	CTCTTC	2 cut(s)	323, 1074
Eco130I	CCWWGG	2 cut(s)	671, 1218
Eco47I	GGWCC	2 cut(s)	626, 1121
Eco47III	AGCGCT	1 cut(s)	1066
Eco57I	CTGAAG	3 cut(s)	135, 837, 1313
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	745, 1238
EcoT14I	CCWWGG	2 cut(s)	671, 1218
EcoT22I	ATGCAT	1 cut(s)	922
ErhI	CCWWGG	2 cut(s)	671, 1218
FaeI	CATG	3 cut(s)	328, 867, 1405
FalI	AAGNNNNNCTT	6 cut(s)	302, 334, 365, 397, 1211, 1243
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	324, 863, 1401
FauNDI	CATATG	1 cut(s)	1287
FbaI	TGATCA	2 cut(s)	754, 1185
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	4 cut(s)	226, 558, 820, 1406
FokI	GGATG	7 cut(s)	40, 350, 519, 809, 818, 929, 1391
Fsp4HI	GCNGC	4 cut(s)	226, 558, 820, 1406
FspBI	CTAG	2 cut(s)	515, 740
GlaI	GCGC	1 cut(s)	1066
GluI	GCNGC	4 cut(s)	226, 558, 820, 1406
GsaI	CCCAGC	1 cut(s)	232
GsuI	CTGGAG	3 cut(s)	37, 456, 1261
HaeII	RGCGCY	1 cut(s)	1068
HaeIII	GGCC	3 cut(s)	196, 745, 1217
HapII	CCGG	3 cut(s)	402, 651, 785
HhaI	GCGC	1 cut(s)	1067
Hin1II	CATG	3 cut(s)	328, 867, 1405
Hin6I	GCGC	1 cut(s)	1065
HinP1I	GCGC	1 cut(s)	1065
HincII	GTYRAC	1 cut(s)	1107
HindII	GTYRAC	1 cut(s)	1107
HinfI	GANTC	4 cut(s)	5, 461, 775, 1433
HpaII	CCGG	3 cut(s)	402, 651, 785
HphI	GGTGA	3 cut(s)	639, 716, 1352
Hpy166II	GTNNAC	4 cut(s)	477, 613, 1107, 1522
Hpy188I	TCNGA	2 cut(s)	85, 360
Hpy188III	TCNNGA	7 cut(s)	16, 58, 200, 254, 779, 794, 1052
Hpy8I	GTNNAC	4 cut(s)	477, 613, 1107, 1522
HpyAV	CCTTC	4 cut(s)	80, 110, 833, 1237
HpyCH4III	ACNGT	4 cut(s)	481, 1104, 1151, 1235
HpyCH4IV	ACGT	2 cut(s)	1135, 1533
HpyF10VI	GCNNNNNNNGC	9 cut(s)	231, 290, 437, 532, 557, 854, 884, 1223, 1297
HpyF3I	CTNAG	5 cut(s)	201, 260, 359, 372, 1313
HpySE526I	ACGT	2 cut(s)	1135, 1533
Hsp92II	CATG	3 cut(s)	328, 867, 1405
HspAI	GCGC	1 cut(s)	1065
Ksp22I	TGATCA	2 cut(s)	754, 1185
Kzo9I	GATC	6 cut(s)	256, 754, 781, 946, 1185, 1280
LguI	GCTCTTC	1 cut(s)	1074
LmnI	GCTCC	3 cut(s)	437, 511, 1504
Lsp1109I	GCAGC	4 cut(s)	237, 569, 831, 1392
LweI	GCATC	4 cut(s)	655, 703, 907, 974
MaeI	CTAG	2 cut(s)	515, 740
MaeII	ACGT	2 cut(s)	1135, 1533
MaeIII	GTNAC	5 cut(s)	209, 263, 645, 718, 910
MalI	GATC	6 cut(s)	258, 756, 783, 948, 1187, 1282
MboI	GATC	6 cut(s)	256, 754, 781, 946, 1185, 1280
MboII	GAAGA	6 cut(s)	176, 340, 1061, 1104, 1306, 1367
MfeI	CAATTG	1 cut(s)	1509
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	7 cut(s)	79, 129, 156, 341, 1474, 1491, 1509
MmeI	TCCRAC	2 cut(s)	523, 604
Mph1103I	ATGCAT	1 cut(s)	922
MroXI	GAANNNNTTC	1 cut(s)	774
MseI	TTAA	6 cut(s)	249, 306, 344, 389, 1085, 1410
MspA1I	CMGCKG	2 cut(s)	228, 897
MspI	CCGG	3 cut(s)	402, 651, 785
MspR9I	CCNGG	4 cut(s)	402, 651, 747, 1240
MunI	CAATTG	1 cut(s)	1509
MvaI	CCWGG	2 cut(s)	747, 1240
MwoI	GCNNNNNNNGC	9 cut(s)	231, 290, 437, 532, 557, 854, 884, 1223, 1297
NciI	CCSGG	2 cut(s)	402, 651
NdeI	CATATG	1 cut(s)	1287
NdeII	GATC	6 cut(s)	256, 754, 781, 946, 1185, 1280
NlaIII	CATG	3 cut(s)	328, 867, 1405
NlaIV	GGNNCC	2 cut(s)	1079, 1123
NmuCI	GTSAC	4 cut(s)	209, 645, 718, 910
NsiI	ATGCAT	1 cut(s)	922
NspV	TTCGAA	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	1074
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	4 cut(s)	5, 461, 775, 1433
PflMI	CCANNNNNTGG	1 cut(s)	1379
PkrI	GCNGC	4 cut(s)	227, 559, 821, 1407
Ppu21I	YACGTR	1 cut(s)	1136
PshBI	ATTAAT	1 cut(s)	1085
PsiI	TTATAA	1 cut(s)	891
Psp6I	CCWGG	2 cut(s)	745, 1238
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	2 cut(s)	745, 1238
PspN4I	GGNNCC	2 cut(s)	1079, 1123
PspPI	GGNCC	3 cut(s)	626, 743, 1121
PstNI	CAGNNNCTG	2 cut(s)	936, 1239
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	228
RsaI	GTAC	6 cut(s)	112, 476, 603, 1101, 1179, 1237
RsaNI	GTAC	6 cut(s)	111, 475, 602, 1100, 1178, 1236
SapI	GCTCTTC	1 cut(s)	1074
SaqAI	TTAA	6 cut(s)	249, 306, 344, 389, 1085, 1410
SatI	GCNGC	4 cut(s)	226, 558, 820, 1406
Sau3AI	GATC	6 cut(s)	256, 754, 781, 946, 1185, 1280
Sau96I	GGNCC	3 cut(s)	626, 743, 1121
ScaI	AGTACT	2 cut(s)	112, 1179
ScrFI	CCNGG	4 cut(s)	402, 651, 747, 1240
SfaNI	GCATC	4 cut(s)	655, 703, 907, 974
SfcI	CTRYAG	2 cut(s)	498, 1060
SfuI	TTCGAA	1 cut(s)	826
SinI	GGWCC	2 cut(s)	626, 1121
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	7 cut(s)	79, 129, 156, 341, 1474, 1491, 1509
SsiI	CCGC	3 cut(s)	716, 897, 1308
SspMI	CTAG	2 cut(s)	515, 740
StyD4I	CCNGG	4 cut(s)	400, 649, 745, 1238
StyI	CCWWGG	2 cut(s)	671, 1218
TaaI	ACNGT	4 cut(s)	481, 1104, 1151, 1235
TaiI	ACGT	2 cut(s)	1138, 1536
TaqI	TCGA	1 cut(s)	826
TasI	AATT	7 cut(s)	79, 129, 156, 341, 1474, 1491, 1509
TatI	WGTACW	5 cut(s)	110, 474, 601, 1099, 1177
TfiI	GAWTC	4 cut(s)	5, 461, 775, 1433
Tru1I	TTAA	6 cut(s)	249, 306, 344, 389, 1085, 1410
Tru9I	TTAA	6 cut(s)	249, 306, 344, 389, 1085, 1410
TscAI	CASTG	2 cut(s)	484, 1154
TseFI	GTSAC	4 cut(s)	209, 645, 718, 910
TseI	GCWGC	4 cut(s)	225, 557, 819, 1405
Tsp45I	GTSAC	4 cut(s)	209, 645, 718, 910
TspDTI	ATGAA	9 cut(s)	55, 59, 177, 341, 354, 457, 696, 1425, 1467
TspGWI	ACGGA	1 cut(s)	929
TspRI	CASTG	2 cut(s)	484, 1154
Van91I	CCANNNNNTGG	1 cut(s)	1379
VpaK11BI	GGWCC	2 cut(s)	626, 1121
VspI	ATTAAT	1 cut(s)	1085
XapI	RAATTY	2 cut(s)	79, 1474
XmiI	GTMKAC	1 cut(s)	612
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	2 cut(s)	515, 740
ZrmI	AGTACT	2 cut(s)	112, 1179
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.