Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001523

Physical Location & Seq

Genomic Coordinates Reverse (-)

56402372 .. 56404742

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0472900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGAGTTTTGTTATGTATGCTAGAGGTCTTCCCTTAGCTCTTAAAACTTTGGGGTCCTTCTTGTACAAAAGAAGTCTACCATCATGGAGTTCTACATTGGAAAACCTACGGAAAACTCCTGACAAAACAGTTTTTGATTTGCTAAAAGTGAGTTATGATGGACTTGATGAGATGCAGAAGAAAATTTTTCGGGACATCGCTTGTTTCCGCGTGCTGTATCAGAATGAGTCTATGATTGAACAAGTATACAGTTCCGAGTTTTCCTCACGTATTGCAATAGATGTTCTTGCTGAAAGATCTCTCTTAACTATTTCACGCAACCAGATATATATGCATGACTTGATACAAGAAATGGGATGTGAAATTGTTCGTCAAGAGAATGAAGAGCCTGGTGGACGCAGTCGGTTGTGGCTTTGCAACGACATTTTTCATGTATTCACAAAGAAAACGGGAACAGAAGCCATTGAAGGCATATTGTTAGACCTGGTTGAATTAGAAGAGGCAGATTGGAATCTTGAAGCCTTCTCTAAAATGTGTAAACTGAAGCTGCTCTACATTCATAATTTGAGGCTTTCTGTTGGCCCAAGATTGCTTCCTAATTCCTTGAGATTTCTGAGTTGGAGTTGGTATCCTTCAAAATCTCTCCCACCGTGTTTTCAACCGGATGAACTTACTGGACTCAGTTTGGTTCATAGCAATATTGATCACCTCTGGAATGGAATAAAATATTTGGGCAAGTTGAAATCCATTGATCTTAGTTACTCCATAAACTTGACAAAGACCCCAGATTTCACAGTTACTCCAAATCTTGAGAAGTTGGTTCTTGAAGGTTGTACCAATTTAGTTAAGATTCATCCATCCATTGCATTGCTGAAGAGACTCAAAATTTGGAATTTTAGAAACTGCAAAAGTATTAAGAGTCTACCAATAAGTGAAGTAAATATGGAGTTTCTTGAAACATTTGATGTGTCCGGCTGCTCAAAACTGAAAATGATTCCAGAATTTGTGGGGCGAATGAAAAGATTATCAAAGCTTTATTTAGGTGGGACTGCTGTTGAGAAACTGCCTTCATCAATTGAGCAGTTGAGTGAGAGTTTGGTGGAGCTTGATTTGAGTGGAATTGTTATACGAGAGCAGCCATACTCCCGTTTTCTTAAGCAGAATCTCATAGTATCATCTTTTGGCTTATTTCCGAGAAAGAGTCCTCACCCTTTGATTCCTCTGTTAGCTTCCTTGAAGCATTTCTCTTCTTTGACGGAATTAAATCTGAATGACTGTAATCTCAGTGAAGGGGAAATTCCCAATGATATTGATTCTCTGTCCTCCTTAGAGTACTTGGAACTCAGTGGAAACAATTTTGTTAGCCTTCCTGCAAGCATTCATTTGCTTTCTAAGCTTGAATATATTGATTTGGAGAATTGCAAAAGGCTTCAACAATTTCCAGAACCTACTGCAAATGACGTCTTATCTAGAACCGGATTTGGGCTCAATTGCGTCAATTGCCTCAGTATGGTCGGTAATCAAGATGCTAGTTATCTTTTATATGCAGTGCTAAAGCGGTGGATTGAGATTCATATGCAGGAAACCCATCGCCGCCCTCTTGAGTTTTTCCGTCTTGTAATTCCTGGAAGTGAAATTCCTGAGTGGTTCAATAATCAAAGTGTGGGAGGTAGGGTAACTGAGAAGTTACCTTCGGATGCATGTAATAGCAAGTGGATTGGGTTTGCTGTGTGTGCTCTAATTGTACCTCAAGATAATCCGTCTGCCGTTCCTGAAGACCCCGATTTAGATCCTGATACCTGTGAAACAATTTGTTTTTGGAACTATCATGGTATTGATTTTGATGGTGTTGGTATCCCTGTAAAACAATTTGTTTCAGATCACCTTTACTTACTTACTTTGCTAAGCCCTCTCCGGATACCTGAGAACTGTCTGGAGGTTAAGTTTTCCTTCCAAATCACTCGAGCTGTAGGAAGCAACAGATGCATAAAGGTGAAGAAATGTGGGGTCCGGGCACTGTACGAGCACGACAGGGAAGAGCTGATCAGTAAAATGAACCAAACCAAGAGCAGCAGCATTTCTCTCTACGAGGAGGCTATGGATGAAGAAGAAGGTGCCATGGTTAAGGCAGCAACAAGCGGAAGTGGTGGCTCTGACGATGAATATTACTCTGCAGCAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

728

Amino Acids

82.55

Weight (kDa)

5.53

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_ROQ1	PF23282	57 - 125	2e-13	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	270 - 374	1e-06	Leucine-rich repeat region
LRR_13	PF23286	317 - 490	4.1e-11	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	407 - 482	8.8e-08	Leucine-rich repeat region
C-JID	PF20160	541 - 679	7.9e-15	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34940 AT5G34940 AT5G34940 AT5G34940
fragaria_vesca	FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_2g28720 FvH4_2g28720 FvH4_2g28730
malus_domestica	MD02G1019000.v1.1 MD15G1128700.v1.1 MD15G1162800.v1.1
prunus_persica	Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1
pyrus_communis	pycom02g01700 pycom15g11580 pycom15g14640
rosa_chinensis	RchiOBHm_Chr2g0087151 RchiOBHm_Chr6g0297501
rosa_laevigata	RLG00000011589 RLG00000015837
rosa_multiflora	Rmu_sc0003367.1_g000005 Rmu_ssc0000239.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153840 Rroxscaffold_7G00170420
rosa_rugosa	Rorug01G0472900 Rorug01G0473000 Rorug06G0272700 Rorug06G0272800
rosa_samantha	Rh2AG026100 Rh2BG026000 Rh2CG026600 Rh2CG372400 Rh2DG026400 Rh6AG384000 Rh6BG103300 Rh6BG114100 Rh6BG392100 Rh6CG112400 Rh6CG398000 Rh6DG384500
rosa_wichuraiana	Rw2G002090 Rw6G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1464
AccB1I	GGYRCC	1 cut(s)	2114
AccI	GTMKAC	3 cut(s)	76, 246, 922
AccII	CGCG	1 cut(s)	210
AccIII	TCCGGA	1 cut(s)	1914
AciI	CCGC	4 cut(s)	208, 1558, 1594, 2139
AclWI	GGATC	1 cut(s)	1784
AcsI	RAATTY	6 cut(s)	183, 885, 892, 1001, 1296, 1635
AcuI	CTGAAG	3 cut(s)	563, 893, 1794
AcyI	GRCGYC	1 cut(s)	1461
AfaI	GTAC	5 cut(s)	65, 835, 1334, 1746, 2021
AfiI	CCNNNNNNNGG	2 cut(s)	1482, 1510
AflII	CTTAAG	1 cut(s)	1154
AjnI	CCWGG	3 cut(s)	388, 483, 1624
AluBI	AGCT	8 cut(s)	38, 547, 1033, 1105, 1229, 1396, 1967, 2041
AluI	AGCT	8 cut(s)	38, 547, 1033, 1105, 1229, 1396, 1967, 2041
Alw21I	GWGCWC	2 cut(s)	1738, 2028
Alw26I	GTCTC	1 cut(s)	871
AlwI	GGATC	1 cut(s)	1784
Ama87I	CYCGRG	1 cut(s)	1962
Aor13HI	TCCGGA	1 cut(s)	1914
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	7 cut(s)	547, 975, 1135, 2070, 2073, 2129, 2174
ApoI	RAATTY	6 cut(s)	183, 885, 892, 1001, 1296, 1635
ArsI	GACNNNNNNTTYG	2 cut(s)	870, 902
Asp700I	GAANNNNTTC	2 cut(s)	366, 1241
AspS9I	GGNCC	3 cut(s)	54, 581, 2008
AsuC2I	CCSGG	1 cut(s)	2012
AsuHPI	GGTGA	4 cut(s)	698, 1199, 1874, 2005
AvaI	CYCGRG	1 cut(s)	1962
AvaII	GGWCC	2 cut(s)	54, 2008
BaeGI	GKGCMC	1 cut(s)	2017
BanI	GGYRCC	1 cut(s)	2114
BanII	GRGCYC	1 cut(s)	1488
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
BbsI	GAAGAC	2 cut(s)	20, 1782
Bbv12I	GWGCWC	2 cut(s)	1738, 2028
BbvI	GCAGC	6 cut(s)	534, 962, 1147, 2082, 2085, 2141
BccI	CCATC	5 cut(s)	88, 152, 865, 1596, 1838
BceAI	ACGGC	1 cut(s)	1751
BciT130I	CCWGG	3 cut(s)	390, 485, 1626
BciVI	GTATCC	3 cut(s)	639, 1865, 1911
BclI	TGATCA	2 cut(s)	703, 2043
BcnI	CCSGG	1 cut(s)	2012
BcoDI	GTCTC	1 cut(s)	871
BfaI	CTAG	3 cut(s)	21, 1470, 1530
BfmI	CTRYAG	2 cut(s)	1968, 2172
BfrI	CTTAAG	1 cut(s)	1154
BfuI	GTATCC	3 cut(s)	639, 1865, 1911
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	8 cut(s)	548, 976, 1136, 1594, 2071, 2074, 2130, 2175
BlpI	GCTNAGC	1 cut(s)	1904
BlsI	GCNGC	8 cut(s)	549, 977, 1137, 1595, 2072, 2075, 2131, 2176
BmcAI	AGTACT	1 cut(s)	1334
Bme1390I	CCNGG	4 cut(s)	390, 485, 1626, 2012
Bme18I	GGWCC	2 cut(s)	54, 2008
BmeT110I	CYCGRG	1 cut(s)	1962
BmgT120I	GGNCC	3 cut(s)	54, 581, 2008
BmiI	GGNNCC	3 cut(s)	55, 2009, 2116
BmrFI	CCNGG	4 cut(s)	390, 485, 1626, 2012
BmsI	GCATC	4 cut(s)	162, 1516, 1687, 1973
BpiI	GAAGAC	2 cut(s)	20, 1782
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpmI	CTGGAG	1 cut(s)	1955
Bpu10I	CCTNAGC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	1904
BpuEI	CTTGAG	4 cut(s)	625, 830, 1622, 1734
BpuMI	CCSGG	1 cut(s)	2012
BsaAI	YACGTR	1 cut(s)	269
BsaBI	GATNNNNATC	2 cut(s)	510, 1788
BsaHI	GRCGYC	1 cut(s)	1461
BsaJI	CCNNGG	1 cut(s)	2118
BsaWI	WCCGGW	3 cut(s)	661, 1475, 1914
BsaXI	ACNNNNNCTCC	6 cut(s)	784, 814, 1659, 1689, 1928, 1958
Bsc4I	CCNNNNNNNGG	2 cut(s)	1482, 1510
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	2 cut(s)	861, 866
Bse8I	GATNNNNATC	2 cut(s)	510, 1788
BseAI	TCCGGA	1 cut(s)	1914
BseBI	CCWGG	3 cut(s)	390, 485, 1626
BseDI	CCNNGG	1 cut(s)	2118
BseGI	GGATG	6 cut(s)	362, 670, 853, 857, 1702, 2107
BseJI	GATNNNNATC	2 cut(s)	510, 1788
BseLI	CCNNNNNNNGG	2 cut(s)	1482, 1510
BseMI	GCAATG	2 cut(s)	861, 866
BseMII	CTCAG	8 cut(s)	605, 694, 1297, 1357, 1519, 1632, 1671, 1914
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	1 cut(s)	2105
BseSI	GKGCMC	1 cut(s)	2017
BseXI	GCAGC	6 cut(s)	534, 962, 1147, 2082, 2085, 2141
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	582
BshNI	GGYRCC	1 cut(s)	2114
BsiHKAI	GWGCWC	2 cut(s)	1738, 2028
BsiHKCI	CYCGRG	1 cut(s)	1962
BsiSI	CCGG	5 cut(s)	662, 972, 1476, 1915, 2011
BslFI	GGGAC	2 cut(s)	206, 1060
BslI	CCNNNNNNNGG	2 cut(s)	1482, 1510
BsmAI	GTCTC	1 cut(s)	871
BsmFI	GGGAC	2 cut(s)	206, 1060
BsmI	GAATGC	1 cut(s)	1377
BsnI	GGCC	1 cut(s)	582
BsoBI	CYCGRG	1 cut(s)	1962
Bsp1286I	GDGCHC	4 cut(s)	1488, 1738, 2017, 2028
Bsp13I	TCCGGA	1 cut(s)	1914
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	6 cut(s)	296, 703, 751, 1789, 1879, 2043
Bsp1720I	GCTNAGC	1 cut(s)	1904
Bsp19I	CCATGG	1 cut(s)	2118
BspACI	CCGC	4 cut(s)	208, 1558, 1594, 2139
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	8 cut(s)	606, 693, 1296, 1356, 1518, 1633, 1672, 1915
BspEI	TCCGGA	1 cut(s)	1914
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	3 cut(s)	55, 2009, 2116
BspMAI	CTGCAG	1 cut(s)	2176
BspPI	GGATC	1 cut(s)	1784
BspQI	GCTCTTC	2 cut(s)	378, 2031
BspT107I	GGYRCC	1 cut(s)	2114
BspTI	CTTAAG	1 cut(s)	1154
BsrDI	GCAATG	2 cut(s)	861, 866
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	679
BssECI	CCNNGG	1 cut(s)	2118
BssMI	GATC	6 cut(s)	296, 703, 751, 1789, 1879, 2043
BssNAI	GTATAC	1 cut(s)	247
BssNI	GRCGYC	1 cut(s)	1461
BssT1I	CCWWGG	1 cut(s)	2118
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	3 cut(s)	390, 485, 1626
Bst4CI	ACNGT	7 cut(s)	130, 251, 651, 796, 1277, 1931, 2019
Bst6I	CTCTTC	5 cut(s)	378, 492, 869, 1252, 2031
BstACI	GRCGYC	1 cut(s)	1461
BstAFI	CTTAAG	1 cut(s)	1154
BstAPI	GCANNNNNTGC	1 cut(s)	1983
BstAUI	TGTACA	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	212, 1375
BstDSI	CCRYGG	1 cut(s)	2118
BstF5I	GGATG	6 cut(s)	362, 670, 853, 857, 1702, 2107
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	6 cut(s)	299, 706, 754, 1792, 1882, 2046
BstMAI	GTCTC	1 cut(s)	871
BstMBI	GATC	6 cut(s)	296, 703, 751, 1789, 1879, 2043
BstMWI	GCNNNNNNNGC	4 cut(s)	1393, 1500, 1733, 1983
BstNI	CCWGG	3 cut(s)	390, 485, 1626
BstNSI	RCATGY	1 cut(s)	1704
BstSCI	CCNGG	4 cut(s)	388, 483, 1624, 2010
BstSFI	CTRYAG	2 cut(s)	1968, 2172
BstSLI	GKGCMC	1 cut(s)	2017
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	6 cut(s)	534, 962, 1147, 2082, 2085, 2141
BstV2I	GAAGAC	2 cut(s)	20, 1782
BstX2I	RGATCY	2 cut(s)	296, 1789
BstYI	RGATCY	2 cut(s)	296, 1789
BstZ17I	GTATAC	1 cut(s)	247
BsuI	GTATCC	3 cut(s)	639, 1865, 1911
BsuRI	GGCC	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	2118
BtgZI	GCGATG	2 cut(s)	181, 1574
BtsCI	GGATG	6 cut(s)	362, 670, 853, 857, 1702, 2107
BtsI	GCAGTG	1 cut(s)	1554
BtsIMutI	CAGTG	4 cut(s)	1291, 1351, 1554, 2015
Cac8I	GCNNGC	2 cut(s)	212, 1375
Cfr13I	GGNCC	3 cut(s)	54, 581, 2008
CseI	GACGC	2 cut(s)	405, 1483
CsiI	ACCWGGT	1 cut(s)	483
Csp6I	GTAC	5 cut(s)	64, 834, 1333, 1745, 2020
CviAII	CATG	6 cut(s)	84, 335, 431, 1701, 1829, 2119
CviQI	GTAC	5 cut(s)	64, 834, 1333, 1745, 2020
DpnI	GATC	6 cut(s)	298, 705, 753, 1791, 1881, 2045
DpnII	GATC	6 cut(s)	296, 703, 751, 1789, 1879, 2043
Eam1104I	CTCTTC	5 cut(s)	378, 492, 869, 1252, 2031
EarI	CTCTTC	5 cut(s)	378, 492, 869, 1252, 2031
Eco130I	CCWWGG	1 cut(s)	2118
Eco24I	GRGCYC	1 cut(s)	1488
Eco47I	GGWCC	2 cut(s)	54, 2008
Eco57I	CTGAAG	3 cut(s)	563, 893, 1794
Eco88I	CYCGRG	1 cut(s)	1962
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRII	CCWGG	3 cut(s)	388, 483, 1624
EcoT14I	CCWWGG	1 cut(s)	2118
EcoT22I	ATGCAT	3 cut(s)	336, 1702, 1988
EcoT38I	GRGCYC	1 cut(s)	1488
ErhI	CCWWGG	1 cut(s)	2118
FaeI	CATG	6 cut(s)	87, 338, 434, 1704, 1832, 2122
FalI	AAGNNNNNCTT	2 cut(s)	1934, 1966
FaqI	GGGAC	2 cut(s)	206, 1060
FatI	CATG	6 cut(s)	83, 334, 430, 1700, 1828, 2118
FauNDI	CATATG	1 cut(s)	1575
FbaI	TGATCA	2 cut(s)	703, 2043
FblI	GTMKAC	3 cut(s)	76, 246, 922
Fnu4HI	GCNGC	8 cut(s)	548, 976, 1136, 1594, 2071, 2074, 2130, 2175
FokI	GGATG	6 cut(s)	369, 677, 840, 844, 1709, 2114
FriOI	GRGCYC	1 cut(s)	1488
Fsp4HI	GCNGC	8 cut(s)	548, 976, 1136, 1594, 2071, 2074, 2130, 2175
FspBI	CTAG	3 cut(s)	21, 1470, 1530
GluI	GCNGC	8 cut(s)	548, 976, 1136, 1594, 2071, 2074, 2130, 2175
GsuI	CTGGAG	1 cut(s)	1955
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	5 cut(s)	662, 972, 1476, 1915, 2011
HgaI	GACGC	2 cut(s)	405, 1483
Hin1I	GRCGYC	1 cut(s)	1461
Hin1II	CATG	6 cut(s)	87, 338, 434, 1704, 1832, 2122
HindIII	AAGCTT	2 cut(s)	1031, 1394
HpaII	CCGG	5 cut(s)	662, 972, 1476, 1915, 2011
HphI	GGTGA	4 cut(s)	698, 1199, 1874, 2005
Hpy166II	GTNNAC	5 cut(s)	77, 247, 395, 539, 923
Hpy188I	TCNGA	8 cut(s)	222, 256, 615, 1194, 1269, 1696, 1879, 2155
Hpy8I	GTNNAC	5 cut(s)	77, 247, 395, 539, 923
HpyCH4III	ACNGT	7 cut(s)	130, 251, 651, 796, 1277, 1931, 2019
HpyCH4IV	ACGT	2 cut(s)	268, 1461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1393, 1500, 1733, 1983
HpySE526I	ACGT	2 cut(s)	268, 1461
Hsp92I	GRCGYC	1 cut(s)	1461
Hsp92II	CATG	6 cut(s)	87, 338, 434, 1704, 1832, 2122
Kpn2I	TCCGGA	1 cut(s)	1914
Ksp22I	TGATCA	2 cut(s)	703, 2043
Kzo9I	GATC	6 cut(s)	296, 703, 751, 1789, 1879, 2043
LguI	GCTCTTC	2 cut(s)	378, 2031
LmnI	GCTCC	1 cut(s)	1102
Lsp1109I	GCAGC	6 cut(s)	534, 962, 1147, 2082, 2085, 2141
LweI	GCATC	4 cut(s)	162, 1516, 1687, 1973
MabI	ACCWGGT	1 cut(s)	483
MaeI	CTAG	3 cut(s)	21, 1470, 1530
MaeII	ACGT	2 cut(s)	268, 1461
MaeIII	GTNAC	4 cut(s)	758, 796, 1675, 1686
MalI	GATC	6 cut(s)	298, 705, 753, 1791, 1881, 2045
MboI	GATC	6 cut(s)	296, 703, 751, 1789, 1879, 2043
MfeI	CAATTG	3 cut(s)	1074, 1489, 1498
MflI	RGATCY	2 cut(s)	296, 1789
MhlI	GDGCHC	4 cut(s)	1488, 1738, 2017, 2028
MlyI	GAGTC	5 cut(s)	236, 672, 873, 928, 1210
MmeI	TCCRAC	1 cut(s)	599
Mph1103I	ATGCAT	3 cut(s)	336, 1702, 1988
MroI	TCCGGA	1 cut(s)	1914
MroXI	GAANNNNTTC	2 cut(s)	366, 1241
MseI	TTAA	8 cut(s)	42, 305, 846, 915, 1155, 1262, 1941, 2124
MslI	CAYNNNNRTG	1 cut(s)	1991
MspCI	CTTAAG	1 cut(s)	1154
MspI	CCGG	5 cut(s)	662, 972, 1476, 1915, 2011
MspR9I	CCNGG	4 cut(s)	390, 485, 1626, 2012
MunI	CAATTG	3 cut(s)	1074, 1489, 1498
Mva1269I	GAATGC	1 cut(s)	1377
MvaI	CCWGG	3 cut(s)	390, 485, 1626
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	4 cut(s)	1393, 1500, 1733, 1983
NciI	CCSGG	1 cut(s)	2012
NcoI	CCATGG	1 cut(s)	2118
NdeI	CATATG	1 cut(s)	1575
NdeII	GATC	6 cut(s)	296, 703, 751, 1789, 1879, 2043
NlaIII	CATG	6 cut(s)	87, 338, 434, 1704, 1832, 2122
NlaIV	GGNNCC	3 cut(s)	55, 2009, 2116
NsiI	ATGCAT	3 cut(s)	336, 1702, 1988
NspI	RCATGY	1 cut(s)	1704
PaeR7I	CTCGAG	1 cut(s)	1962
PciSI	GCTCTTC	2 cut(s)	378, 2031
PctI	GAATGC	1 cut(s)	1377
PdmI	GAANNNNTTC	2 cut(s)	366, 1241
PfeI	GAWTC	7 cut(s)	511, 850, 994, 1162, 1216, 1313, 1570
PflFI	GACNNNGTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	1624
PkrI	GCNGC	8 cut(s)	549, 977, 1137, 1595, 2072, 2075, 2131, 2176
PleI	GAGTC	5 cut(s)	235, 672, 873, 927, 1209
PpsI	GAGTC	5 cut(s)	235, 672, 873, 927, 1209
Ppu21I	YACGTR	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	388, 483, 1624
PspGI	CCWGG	3 cut(s)	388, 483, 1624
PspN4I	GGNNCC	3 cut(s)	55, 2009, 2116
PspPI	GGNCC	3 cut(s)	54, 581, 2008
PspPPI	RGGWCCY	1 cut(s)	54
PspXI	VCTCGAGB	1 cut(s)	1962
PstI	CTGCAG	1 cut(s)	2176
PsuI	RGATCY	2 cut(s)	296, 1789
PsyI	GACNNNGTC	1 cut(s)	399
RsaI	GTAC	5 cut(s)	65, 835, 1334, 1746, 2021
RsaNI	GTAC	5 cut(s)	64, 834, 1333, 1745, 2020
RseI	CAYNNNNRTG	1 cut(s)	1991
SapI	GCTCTTC	2 cut(s)	378, 2031
SaqAI	TTAA	8 cut(s)	42, 305, 846, 915, 1155, 1262, 1941, 2124
SatI	GCNGC	8 cut(s)	548, 976, 1136, 1594, 2071, 2074, 2130, 2175
Sau3AI	GATC	6 cut(s)	296, 703, 751, 1789, 1879, 2043
Sau96I	GGNCC	3 cut(s)	54, 581, 2008
ScaI	AGTACT	1 cut(s)	1334
SchI	GAGTC	5 cut(s)	236, 672, 873, 928, 1210
ScrFI	CCNGG	4 cut(s)	390, 485, 1626, 2012
SduI	GDGCHC	4 cut(s)	1488, 1738, 2017, 2028
SexAI	ACCWGGT	1 cut(s)	483
SfaNI	GCATC	4 cut(s)	162, 1516, 1687, 1973
SfcI	CTRYAG	2 cut(s)	1968, 2172
Sfr274I	CTCGAG	1 cut(s)	1962
SinI	GGWCC	2 cut(s)	54, 2008
SlaI	CTCGAG	1 cut(s)	1962
SmiMI	CAYNNNNRTG	1 cut(s)	1991
SmlI	CTYRAG	6 cut(s)	604, 809, 1154, 1601, 1749, 1962
SmoI	CTYRAG	6 cut(s)	604, 809, 1154, 1601, 1749, 1962
SsiI	CCGC	4 cut(s)	208, 1558, 1594, 2139
SspI	AATATT	3 cut(s)	700, 728, 2165
SspMI	CTAG	3 cut(s)	21, 1470, 1530
StyD4I	CCNGG	4 cut(s)	388, 483, 1624, 2010
StyI	CCWWGG	1 cut(s)	2118
TaaI	ACNGT	7 cut(s)	130, 251, 651, 796, 1277, 1931, 2019
TaiI	ACGT	2 cut(s)	271, 1464
TaqI	TCGA	1 cut(s)	1963
TatI	WGTACW	2 cut(s)	63, 1332
TauI	GCSGC	1 cut(s)	1596
TfiI	GAWTC	7 cut(s)	511, 850, 994, 1162, 1216, 1313, 1570
Tru1I	TTAA	8 cut(s)	42, 305, 846, 915, 1155, 1262, 1941, 2124
Tru9I	TTAA	8 cut(s)	42, 305, 846, 915, 1155, 1262, 1941, 2124
TscAI	CASTG	4 cut(s)	1291, 1351, 1554, 2022
TseI	GCWGC	7 cut(s)	547, 975, 1135, 2070, 2073, 2129, 2174
TspGWI	ACGGA	4 cut(s)	124, 1271, 1601, 1749
TspRI	CASTG	4 cut(s)	1291, 1351, 1554, 2022
Tth111I	GACNNNGTC	1 cut(s)	399
Vha464I	CTTAAG	1 cut(s)	1154
VpaK11BI	GGWCC	2 cut(s)	54, 2008
XapI	RAATTY	6 cut(s)	183, 885, 892, 1001, 1296, 1635
XbaI	TCTAGA	1 cut(s)	1469
XceI	RCATGY	1 cut(s)	1704
XhoI	CTCGAG	1 cut(s)	1962
XmiI	GTMKAC	3 cut(s)	76, 246, 922
XmnI	GAANNNNTTC	2 cut(s)	366, 1241
XspI	CTAG	3 cut(s)	21, 1470, 1530
ZraI	GACGTC	1 cut(s)	1462
ZrmI	AGTACT	1 cut(s)	1334
Zsp2I	ATGCAT	3 cut(s)	336, 1702, 1988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.