Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001523

Physical Location & Seq

Genomic Coordinates Forward (+)

1598449 .. 1601575

Gene Structure 3127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG026400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTTTGGATTTAATAAGGGGTGCTTACCCATGAAGAGATGGGATGAATTAAACTCCTTTTTTCTGAGAACAGGGGCTAAGATTATCTTTGGATTAAATGCCCTCCCCGGACGAACTTTACAGAGTGATGGCTCTGCAACTGGAGCTTGGGACTTTACCAATGCCGAATCTTTCATTCGGTACACTGTCAAACACAACTACTCTATAGCTGGATGGGAGCTAGGGAATGAGCTATGTGGGCGTGGAGTTGGAACAGCAGTAGCAGCAAGTCAGTATGTCAATGATACAGCTTCTCTGCATAAGATAGTACAGAATGTATACAAGGGTGTTGGACCAACGCCACTAATCTTATCACCTGGAGGGTTCTTTGATGCACCTTGGTTCAAAGAACTTGCAGATAAAACCACCACTTCATTAGATGCGGTCACTCACCATATATATAATCTAGGGCCAGGGGTTGATCAACACCTTATTGAAAAGATTCTTGATCCGGCGTATCTGGATGGTATTGCTAACACATTTAGCAGCCTTCGAAACATCCTAAAGACCTCTGCAACTTCAGCAAGTGCATGGGTTGGGGAAGCAGGAGGTGCTTATAACAGCGGTCATCATCTTGTCACGGATGCATTCGTGTTCAGCTTCTGGTATTTGGATCAGCTTGGTATGTCTGCATCTTATGATACCAAAACATATTGCAGACAGACATTGATTGGTGGAAACTATGGTTTTCTCAACACTACTACCTTTGTTCCCAATCCAGACTACTACAGCGCTCTTCTTTGGCACCGATTAATGGGAAGAAATGTACTGTCAACGAGGTTTGCTGGACCCAAAAAGATACGTGCTTATACACACTGTGCAAAACAATCTAAAGGGATTGTAGTACTATTGATCAACCTACACAACACCACCATTGTTCAGGCCAAGGTTGCCTTCAACAGTACCTGGAGTTTGCGACATAGACACAAATCTCACAAGTCTCATAGATCACATATGCTGAAGAAGCACCATAGCGGTCTAAGAAGCTCAACAGAAAGAGTGAGAGGTGATACAGAAAGAGAAGAATACCATTTGACACCAAAGGATGGAAATATACAAAGCCAAACCATGCTGCTTAATGGAAACGCTTTGAATGTGGATTCGTCTGGGAACATACCTACATTAGAACCTATTTTTGTAAATTCATCGCAACCGATAATTGTTGCTCCATTTTCAATTGTATTTGTTCACATACCATACGTTGTTCCCCCTGCTTGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

420

Amino Acids

46.47

Weight (kDa)

9.33

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	1 - 221	5.7e-105	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34940 AT5G34940 AT5G34940 AT5G34940
fragaria_vesca	FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_2g28720 FvH4_2g28720 FvH4_2g28730
malus_domestica	MD02G1019000.v1.1 MD15G1128700.v1.1 MD15G1162800.v1.1
prunus_persica	Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1
pyrus_communis	pycom02g01700 pycom15g11580 pycom15g14640
rosa_chinensis	RchiOBHm_Chr2g0087151 RchiOBHm_Chr6g0297501
rosa_laevigata	RLG00000011589 RLG00000015837
rosa_multiflora	Rmu_sc0003367.1_g000005 Rmu_ssc0000239.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153840 Rroxscaffold_7G00170420
rosa_rugosa	Rorug01G0472900 Rorug01G0473000 Rorug06G0272700 Rorug06G0272800
rosa_samantha	Rh2AG026100 Rh2BG026000 Rh2CG026600 Rh2CG372400 Rh2DG026400 Rh6AG384000 Rh6BG103300 Rh6BG114100 Rh6BG392100 Rh6CG112400 Rh6CG398000 Rh6DG384500
rosa_wichuraiana	Rw2G002090 Rw6G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	1248
AccB1I	GGYRCC	1 cut(s)	783
AccB7I	CCANNNNNTGG	1 cut(s)	1085
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	3 cut(s)	422, 603, 1014
AclWI	GGATC	2 cut(s)	482, 660
AcsI	RAATTY	1 cut(s)	1180
AcuI	CTGAAG	2 cut(s)	543, 1019
AdeI	CACNNNGTG	1 cut(s)	857
AfaI	GTAC	5 cut(s)	182, 309, 807, 885, 943
AfeI	AGCGCT	1 cut(s)	772
AfiI	CCNNNNNNNGG	2 cut(s)	793, 1085
AgsI	TTSAA	5 cut(s)	385, 476, 937, 1132, 1215
AjnI	CCWGG	3 cut(s)	355, 451, 944
AjuI	GAANNNNNNNTTGG	2 cut(s)	917, 949
AluBI	AGCT	8 cut(s)	146, 209, 220, 232, 290, 639, 658, 1026
AluI	AGCT	8 cut(s)	146, 209, 220, 232, 290, 639, 658, 1026
Alw26I	GTCTC	1 cut(s)	984
AlwI	GGATC	2 cut(s)	482, 660
AlwNI	CAGNNNCTG	2 cut(s)	642, 945
Aor51HI	AGCGCT	1 cut(s)	772
AoxI	GGCC	2 cut(s)	449, 921
ApeKI	GCWGC	3 cut(s)	263, 525, 1111
ApoI	RAATTY	1 cut(s)	1180
AseI	ATTAAT	1 cut(s)	791
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	3 cut(s)	332, 449, 827
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	3 cut(s)	345, 422, 1058
AsuII	TTCGAA	1 cut(s)	532
AvaII	GGWCC	2 cut(s)	332, 827
BanI	GGYRCC	1 cut(s)	783
BbvI	GCAGC	3 cut(s)	275, 537, 1098
BccI	CCATC	5 cut(s)	33, 122, 207, 497, 1079
BciT130I	CCWGG	3 cut(s)	357, 453, 946
BclI	TGATCA	2 cut(s)	460, 891
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	984
BfaI	CTAG	2 cut(s)	221, 446
BfmI	CTRYAG	2 cut(s)	204, 766
BfoI	RGCGCY	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	1248
BisI	GCNGC	3 cut(s)	264, 526, 1112
BlsI	GCNGC	3 cut(s)	265, 527, 1113
BmcAI	AGTACT	1 cut(s)	885
Bme1390I	CCNGG	4 cut(s)	108, 357, 453, 946
Bme18I	GGWCC	2 cut(s)	332, 827
BmgT120I	GGNCC	3 cut(s)	332, 449, 827
BmiI	GGNNCC	2 cut(s)	785, 829
BmrFI	CCNGG	4 cut(s)	108, 357, 453, 946
BmsI	GCATC	4 cut(s)	361, 409, 613, 680
BpmI	CTGGAG	3 cut(s)	162, 378, 967
Bpu14I	TTCGAA	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	842
BsaJI	CCNNGG	4 cut(s)	106, 377, 452, 924
Bsc4I	CCNNNNNNNGG	2 cut(s)	793, 1085
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	3 cut(s)	357, 453, 946
BseDI	CCNNGG	4 cut(s)	106, 377, 452, 924
BseGI	GGATG	6 cut(s)	49, 218, 508, 537, 628, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	793, 1085
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	3 cut(s)	275, 537, 1098
BshFI	GGCC	2 cut(s)	451, 923
BshNI	GGYRCC	1 cut(s)	783
BsiSI	CCGG	2 cut(s)	108, 491
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	793, 1085
BsmAI	GTCTC	1 cut(s)	984
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	451, 923
Bsp119I	TTCGAA	1 cut(s)	532
Bsp143I	GATC	5 cut(s)	460, 487, 652, 891, 986
BspACI	CCGC	3 cut(s)	422, 603, 1014
BspANI	GGCC	2 cut(s)	451, 923
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	785, 829
BspMI	ACCTGC	1 cut(s)	1248
BspPI	GGATC	2 cut(s)	482, 660
BspQI	GCTCTTC	1 cut(s)	780
BspT104I	TTCGAA	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	106, 377, 452, 924
BssMI	GATC	5 cut(s)	460, 487, 652, 891, 986
BssNAI	GTATAC	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	377, 924
Bst1107I	GTATAC	1 cut(s)	319
Bst2UI	CCWGG	3 cut(s)	357, 453, 946
Bst4CI	ACNGT	4 cut(s)	187, 810, 857, 941
Bst6I	CTCTTC	2 cut(s)	29, 780
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	1255
BstDEI	CTNAG	3 cut(s)	65, 78, 1019
BstF5I	GGATG	6 cut(s)	49, 218, 508, 537, 628, 1090
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	5 cut(s)	463, 490, 655, 894, 989
BstMAI	GTCTC	1 cut(s)	984
BstMBI	GATC	5 cut(s)	460, 487, 652, 891, 986
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 238, 263, 560, 590, 929, 1003
BstNI	CCWGG	3 cut(s)	357, 453, 946
BstSCI	CCNGG	4 cut(s)	106, 355, 451, 944
BstSFI	CTRYAG	2 cut(s)	204, 766
BstV1I	GCAGC	3 cut(s)	275, 537, 1098
BstZ17I	GTATAC	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	451, 923
BtgZI	GCGATG	1 cut(s)	1170
BtsCI	GGATG	6 cut(s)	49, 218, 508, 537, 628, 1090
BtsIMutI	CAGTG	2 cut(s)	183, 853
BveI	ACCTGC	1 cut(s)	1248
Cac8I	GCNNGC	1 cut(s)	1255
CaiI	CAGNNNCTG	2 cut(s)	642, 945
CfoI	GCGC	1 cut(s)	773
Cfr13I	GGNCC	3 cut(s)	332, 449, 827
Csp6I	GTAC	5 cut(s)	181, 308, 806, 884, 942
CviAII	CATG	3 cut(s)	31, 570, 1108
CviQI	GTAC	5 cut(s)	181, 308, 806, 884, 942
DdeI	CTNAG	3 cut(s)	65, 78, 1019
DpnI	GATC	5 cut(s)	462, 489, 654, 893, 988
DpnII	GATC	5 cut(s)	460, 487, 652, 891, 986
DraIII	CACNNNGTG	1 cut(s)	857
Eam1104I	CTCTTC	2 cut(s)	29, 780
EarI	CTCTTC	2 cut(s)	29, 780
Eco130I	CCWWGG	2 cut(s)	377, 924
Eco47I	GGWCC	2 cut(s)	332, 827
Eco47III	AGCGCT	1 cut(s)	772
Eco57I	CTGAAG	2 cut(s)	543, 1019
EcoRII	CCWGG	3 cut(s)	355, 451, 944
EcoT14I	CCWWGG	2 cut(s)	377, 924
EcoT22I	ATGCAT	1 cut(s)	628
ErhI	CCWWGG	2 cut(s)	377, 924
FaeI	CATG	3 cut(s)	34, 573, 1111
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 71, 103, 917, 949
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	30, 569, 1107
FauNDI	CATATG	1 cut(s)	993
FbaI	TGATCA	2 cut(s)	460, 891
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	264, 526, 1112
FokI	GGATG	6 cut(s)	56, 225, 515, 524, 635, 1097
Fsp4HI	GCNGC	3 cut(s)	264, 526, 1112
FspBI	CTAG	2 cut(s)	221, 446
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	3 cut(s)	264, 526, 1112
GsuI	CTGGAG	3 cut(s)	162, 378, 967
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	2 cut(s)	451, 923
HapII	CCGG	2 cut(s)	108, 491
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	3 cut(s)	34, 573, 1111
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HinfI	GANTC	3 cut(s)	167, 481, 1139
HpaII	CCGG	2 cut(s)	108, 491
HphI	GGTGA	3 cut(s)	345, 422, 1058
Hpy166II	GTNNAC	4 cut(s)	183, 319, 813, 1228
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	485, 500, 758
Hpy8I	GTNNAC	4 cut(s)	183, 319, 813, 1228
HpyAV	CCTTC	2 cut(s)	539, 943
HpyCH4III	ACNGT	4 cut(s)	187, 810, 857, 941
HpyCH4IV	ACGT	2 cut(s)	841, 1239
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 238, 263, 560, 590, 929, 1003
HpyF3I	CTNAG	3 cut(s)	65, 78, 1019
HpySE526I	ACGT	2 cut(s)	841, 1239
Hsp92II	CATG	3 cut(s)	34, 573, 1111
HspAI	GCGC	1 cut(s)	771
Ksp22I	TGATCA	2 cut(s)	460, 891
Kzo9I	GATC	5 cut(s)	460, 487, 652, 891, 986
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	3 cut(s)	143, 217, 1210
Lsp1109I	GCAGC	3 cut(s)	275, 537, 1098
LweI	GCATC	4 cut(s)	361, 409, 613, 680
MaeI	CTAG	2 cut(s)	221, 446
MaeII	ACGT	2 cut(s)	841, 1239
MaeIII	GTNAC	2 cut(s)	424, 616
MalI	GATC	5 cut(s)	462, 489, 654, 893, 988
MboI	GATC	5 cut(s)	460, 487, 652, 891, 986
MboII	GAAGA	5 cut(s)	46, 767, 810, 1012, 1073
MfeI	CAATTG	1 cut(s)	1215
MluCI	AATT	4 cut(s)	47, 1180, 1197, 1215
MmeI	TCCRAC	2 cut(s)	229, 310
MnlI	CCTC	6 cut(s)	113, 353, 559, 581, 810, 1037
Mph1103I	ATGCAT	1 cut(s)	628
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	5 cut(s)	12, 50, 95, 791, 1116
MspA1I	CMGCKG	1 cut(s)	603
MspI	CCGG	2 cut(s)	108, 491
MspR9I	CCNGG	4 cut(s)	108, 357, 453, 946
MunI	CAATTG	1 cut(s)	1215
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	3 cut(s)	357, 453, 946
MwoI	GCNNNNNNNGC	7 cut(s)	143, 238, 263, 560, 590, 929, 1003
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	1 cut(s)	993
NdeII	GATC	5 cut(s)	460, 487, 652, 891, 986
NlaIII	CATG	3 cut(s)	34, 573, 1111
NlaIV	GGNNCC	2 cut(s)	785, 829
NmuCI	GTSAC	2 cut(s)	424, 616
NsiI	ATGCAT	1 cut(s)	628
NspV	TTCGAA	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	780
PctI	GAATGC	1 cut(s)	626
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	3 cut(s)	167, 481, 1139
PflMI	CCANNNNNTGG	1 cut(s)	1085
PkrI	GCNGC	3 cut(s)	265, 527, 1113
Ppu21I	YACGTR	1 cut(s)	842
PshBI	ATTAAT	1 cut(s)	791
PsiI	TTATAA	1 cut(s)	597
Psp6I	CCWGG	3 cut(s)	355, 451, 944
PspGI	CCWGG	3 cut(s)	355, 451, 944
PspN4I	GGNNCC	2 cut(s)	785, 829
PspPI	GGNCC	3 cut(s)	332, 449, 827
PstNI	CAGNNNCTG	2 cut(s)	642, 945
RsaI	GTAC	5 cut(s)	182, 309, 807, 885, 943
RsaNI	GTAC	5 cut(s)	181, 308, 806, 884, 942
SapI	GCTCTTC	1 cut(s)	780
SaqAI	TTAA	5 cut(s)	12, 50, 95, 791, 1116
SatI	GCNGC	3 cut(s)	264, 526, 1112
Sau3AI	GATC	5 cut(s)	460, 487, 652, 891, 986
Sau96I	GGNCC	3 cut(s)	332, 449, 827
ScaI	AGTACT	1 cut(s)	885
ScrFI	CCNGG	4 cut(s)	108, 357, 453, 946
SfaNI	GCATC	4 cut(s)	361, 409, 613, 680
SfcI	CTRYAG	2 cut(s)	204, 766
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	2 cut(s)	332, 827
Sse9I	AATT	4 cut(s)	47, 1180, 1197, 1215
SsiI	CCGC	3 cut(s)	422, 603, 1014
SspMI	CTAG	2 cut(s)	221, 446
StyD4I	CCNGG	4 cut(s)	106, 355, 451, 944
StyI	CCWWGG	2 cut(s)	377, 924
TaaI	ACNGT	4 cut(s)	187, 810, 857, 941
TaiI	ACGT	2 cut(s)	844, 1242
TaqI	TCGA	1 cut(s)	532
TasI	AATT	4 cut(s)	47, 1180, 1197, 1215
TatI	WGTACW	3 cut(s)	307, 805, 883
TfiI	GAWTC	3 cut(s)	167, 481, 1139
Tru1I	TTAA	5 cut(s)	12, 50, 95, 791, 1116
Tru9I	TTAA	5 cut(s)	12, 50, 95, 791, 1116
TscAI	CASTG	2 cut(s)	190, 860
TseFI	GTSAC	2 cut(s)	424, 616
TseI	GCWGC	3 cut(s)	263, 525, 1111
Tsp45I	GTSAC	2 cut(s)	424, 616
TspDTI	ATGAA	5 cut(s)	47, 60, 163, 402, 1173
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	2 cut(s)	190, 860
Van91I	CCANNNNNTGG	1 cut(s)	1085
VpaK11BI	GGWCC	2 cut(s)	332, 827
VspI	ATTAAT	1 cut(s)	791
XapI	RAATTY	1 cut(s)	1180
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	2 cut(s)	221, 446
ZrmI	AGTACT	1 cut(s)	885
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.