Rh6CG112400

heparanase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001523
Physical Location & Seq
Reverse (-)
12909902 .. 12916248
6347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG112400.1

Sequence Viewer

Length: 207 bp
ATGATGGCGCTGAGGGACATGATGGCCAGGCAGACGATGGTGAAGAACATTGGGTTGGGGGAAAGGAGGAGGATGACGTTTCCTTTCATATGCCCATGTCAGAGAGAGACAAGCTGGGGCAAGGCTACTCTTCTTAATTTGGATCTAAGTAATAATGTCTTATCAAATGCCATAAAGGCTTTTTCACCATTGAAACTTAGATTGTGA

Protein Analysis

68

Amino Acids

7.8

Weight (kDa)

10.88

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 36 - 68 8.2e-09 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 24
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 26
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 150
AoxI GGCC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 52, 177
BalI TGGCCA 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 11
BccI CCATC 2 cut(s) 16, 31
BciT130I CCWGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 11
BseBI CCWGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 1 cut(s) 26
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 142
BspANI GGCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 150
BssMI GATC 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 11, 146, 197
BstF5I GGATG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 78
CfoI GCGC 1 cut(s) 10
CviAII CATG 2 cut(s) 19, 96
CviJI RGCY 4 cut(s) 26, 114, 125, 179
CviKI_1 RGCY 4 cut(s) 26, 114, 125, 179
DdeI CTNAG 3 cut(s) 11, 146, 197
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 26
FaeI CATG 2 cut(s) 22, 99
FaiI YATR 5 cut(s) 20, 89, 91, 97, 173
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 18, 95
FauNDI CATATG 1 cut(s) 89
FokI GGATG 1 cut(s) 85
GlaI GCGC 1 cut(s) 9
GsaI CCCAGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 1 cut(s) 26
HhaI GCGC 1 cut(s) 10
Hin1II CATG 2 cut(s) 22, 99
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HphI GGTGA 2 cut(s) 52, 177
Hpy188I TCNGA 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 3 cut(s) 11, 146, 197
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 2 cut(s) 22, 99
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 13, 40, 100
MaeII ACGT 1 cut(s) 77
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 55, 122
MflI RGATCY 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 26
MnlI CCTC 3 cut(s) 6, 60, 63
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeI CATATG 1 cut(s) 89
NdeII GATC 1 cut(s) 142
NlaIII CATG 2 cut(s) 22, 99
Psp6I CCWGG 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 114
PspGI CCWGG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 142
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 28
SetI ASST 2 cut(s) 80, 116
SgeI CNNG 7 cut(s) 31, 39, 40, 108, 123, 127, 133
Sse9I AATT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 80
TasI AATT 1 cut(s) 136
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.