Rh2CG372400

heparanase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001523
Physical Location & Seq
Reverse (-)
50531158 .. 50538837
7680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG372400.1

Sequence Viewer

Length: 276 bp
ATGTTTTTCTGTTATGGCATTCACATGATTCTTATCAAAGAAGGAAAGGGAATAGGAGGAGGTAGTACTGAAGGTTTGGTTAGAATTGATGGGAAAGAAACCATTGGGAAAATTGATAAAGATTTTGTTTGTGCAACTTTGGATTGGTGGCCTCCTGAGAAATGTGACTATGGAACTTGCAGCTGGGGCAAGGCTACTCTTCTTAATCTGGATCTAAGTAATACTGTCTTATCAAATGCCATAAAGGCTTTTTCACCATTGAAACTTAGATTGTGA

Protein Analysis

91

Amino Acids

10.01

Weight (kDa)

7.64

Isoelectric Point (pI)

13.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 25 - 91 6.8e-31 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 67
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
AlwI GGATC 1 cut(s) 219
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 246
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 83
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmcAI AGTACT 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 32
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 192
BseYI CCCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 211
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 219
BssMI GATC 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 156, 215, 266
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 186, 245
BstV1I GCAGC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 66
CviAII CATG 1 cut(s) 25
CviJI RGCY 4 cut(s) 151, 183, 194, 248
CviKI_1 RGCY 4 cut(s) 151, 183, 194, 248
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 3 cut(s) 156, 215, 266
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 90
FaeI CATG 1 cut(s) 28
FaiI YATR 4 cut(s) 15, 26, 171, 242
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 151
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 28
HphI GGTGA 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 155, 209
HpyAV CCTTC 2 cut(s) 35, 65
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 134, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 245
HpyF3I CTNAG 3 cut(s) 156, 215, 266
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 3 cut(s) 168, 169, 194
Lsp1109I GCAGC 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 191
MflI RGATCY 1 cut(s) 211
MluCI AATT 2 cut(s) 84, 111
MnlI CCTC 3 cut(s) 50, 53, 162
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 186, 245
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 164
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 183
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 67
SetI ASST 3 cut(s) 64, 76, 185
SgeI CNNG 6 cut(s) 37, 167, 189, 196, 202, 221
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 2 cut(s) 84, 111
TaaI ACNGT 1 cut(s) 226
TasI AATT 2 cut(s) 84, 111
TatI WGTACW 1 cut(s) 65
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.