Rroxscaffold_2G00153840

heparanase-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
90555720 .. 90558880
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153840.1

Sequence Viewer

Length: 1716 bp
ATGGGTGGCTGGCCGCCACTCTCAGACAGTAAAACCAGGGTTTTATTCAACTCTAATTATTTTGGTCCAAGCCAAAAGCAAAACCCACTTGCAAAAGAGTTGCAGCAGTTGCAACCCACCTCACATTATTCCAACACAGCTACAAAGTTTCTGAAAATGGATTCTCAAATCTGGAGAACAGGGATGTGTTTCTGGGTGTGTTTGTTTGGTTTCTTGAGCTTCATTCATTGTGTGAGTTCAGAAGGAGAGGGAATAGGAGGAGGTAGTACTGAAGGTTTGGTTAGAATTGATGGGAAAGAACCCATTGGGAAAATTGATGAAGATTTTGTTTGTGCAACTTTGGATTGGTGGCCTCCTGAGAAATGTGACTATGGAACTTGCAGCTGGGGCAAGGCTACTCTCCTTAATCTGGATCTAAGTAACACCATCTTATCAAATGCCATAAAGGCTTTTTCACCATTGAAACTTAGACTGGGAGGTACCTTGCAAGATAAAGTCATATATGATACAGAAGACAATAAAGAACCTTGCCCAGTTCCTTTTGTTAAAAATACCACAGCTATGTTTGGATTTAATAAGGGGTGCTTACCCATGAAGAGATGGGATGAATTAAACTCCTTTTTTCTGAGAACAGGGGCTAAGATTATCTTTGGATTAAATGCCCTCCCCGGACGAACTTTACAGAGTGATGGCTCTGCAACTGGAGCTTGGGACTTTACCAATGCCGAATCTTTCATTCGGTACACTGTCAAACAAAACTACTCTATAGCTGGATGGGAGCTAGGGAATGAGCTATGTGGGCGTGGAGTTGGAACAGCAGTAGCAGCAAGTCAGTATGTCGATGATACAGTTTCTCTGCATAAGATAGTACAGAATGTATACAAGGGTGTTGGACCAAAGCCACTAATCTTATCACCTGGAGGGTTCTTTGATGCACCTTGGTTCAAAGAACTTGCAGATAAAACCACCACTTCATTAGATGCGGTCACACACCATATATATAATCTAGGACCAGCAAGTGCATGGGTTGGGGAAGCAGGAGGTGCTTATAACAGTGGTCATCATCTTGTCACGGATGCATTCGTGTTTAGTTTCTGGTATTTGGATCAGCTTGGTATGTCTGCATCTTATGATACCAAAACATATTGCAGACAGACATTGATTGGTGGAAACTATGGTTTACTCAACACTACTACCTTTGTTCCCAATCCAGACTACTACAGTGCTCTTCTTTGGCACCGATTAATGGGAAGAAATGTACTGTCAACAAAGTTTGCTGGACCCAAAAAGATACGTGCTTATACACACTGTGCAAAACAATCTAAAGGGATTGTAGTACTATTGATCAACCTACACAACACCACCATTGTTCAGGCCAAGGTTGCCTTCAACAGTACCTGGAGTTTGCGACATAGACACAAATCTCACAAGTCTCATAGATCACATATGCTGAAGAAGCACCATAGCGGTCTAAGAAGCTCAACAGAAAGAGTGAGAGGTGATACAGAAAGAGAAGAATACCATTTGACACCAAAGGATGGAAATATACAAAGCCAAACCATGCTGCTTAATGGAAACGCTTTGAATGTGGATTCATCTGGGAACATACCTACATTAGAACCTGTTTTTGTAAATTCATCGCAACCGATAATTGTTGCTCCATTTTCAATTGTATTTGTTCACATACCATACGTTGTTCCCCCTGCTTGCAGGTAG

Protein Analysis

571

Amino Acids

63.27

Weight (kDa)

8.88

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 92 - 339 6.5e-116 Glycosyl hydrolase family 79, N-terminal domain
Glyco_hydro_79n PF03662 339 - 372 2.1e-15 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1050
Acc36I ACCTGC 1 cut(s) 1701
Acc65I GGTACC 1 cut(s) 479
AccB1I GGYRCC 2 cut(s) 479, 1236
AccB7I CCANNNNNTGG 1 cut(s) 1538
AccI GTMKAC 1 cut(s) 879
AciI CCGC 3 cut(s) 14, 983, 1467
AclWI GGATC 2 cut(s) 420, 1113
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 1 cut(s) 1633
AcuI CTGAAG 2 cut(s) 291, 1472
AdeI CACNNNGTG 1 cut(s) 1310
AfaI GTAC 7 cut(s) 268, 481, 743, 870, 1260, 1338, 1396
AfiI CCNNNNNNNGG 3 cut(s) 409, 1246, 1538
AgsI TTSAA 6 cut(s) 49, 463, 946, 1390, 1585, 1668
AjnI CCWGG 3 cut(s) 35, 916, 1397
AjuI GAANNNNNNNTTGG 2 cut(s) 1370, 1402
Alw21I GWGCWC 1 cut(s) 1228
Alw26I GTCTC 1 cut(s) 1437
AlwI GGATC 2 cut(s) 420, 1113
AlwNI CAGNNNCTG 1 cut(s) 1398
AoxI GGCC 3 cut(s) 11, 350, 1374
ApeKI GCWGC 4 cut(s) 103, 381, 824, 1564
ApoI RAATTY 1 cut(s) 1633
AseI ATTAAT 1 cut(s) 1244
Asp718I GGTACC 1 cut(s) 479
AspS9I GGNCC 4 cut(s) 65, 893, 1010, 1280
AsuC2I CCSGG 1 cut(s) 669
AsuHPI GGTGA 3 cut(s) 447, 906, 1511
AvaII GGWCC 4 cut(s) 65, 893, 1010, 1280
BanI GGYRCC 2 cut(s) 479, 1236
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 1228
BbvI GCAGC 4 cut(s) 115, 393, 836, 1551
BccI CCATC 6 cut(s) 284, 434, 594, 683, 768, 1532
BciT130I CCWGG 3 cut(s) 37, 918, 1399
BclI TGATCA 1 cut(s) 1344
BcnI CCSGG 1 cut(s) 669
BcoDI GTCTC 1 cut(s) 1437
BfaI CTAG 2 cut(s) 782, 1007
BfmI CTRYAG 2 cut(s) 765, 1219
BfuAI ACCTGC 1 cut(s) 1701
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 5 cut(s) 14, 104, 382, 825, 1565
BlsI GCNGC 5 cut(s) 15, 105, 383, 826, 1566
BmcAI AGTACT 2 cut(s) 268, 1338
Bme1390I CCNGG 4 cut(s) 37, 669, 918, 1399
Bme18I GGWCC 4 cut(s) 65, 893, 1010, 1280
BmgT120I GGNCC 4 cut(s) 65, 893, 1010, 1280
BmiI GGNNCC 3 cut(s) 481, 1238, 1282
BmrFI CCNGG 4 cut(s) 37, 669, 918, 1399
BmrI ACTGGG 2 cut(s) 482, 527
BmsI GCATC 4 cut(s) 922, 970, 1066, 1133
BmuI ACTGGG 2 cut(s) 482, 527
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 4 cut(s) 193, 723, 939, 1420
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 669
BsaAI YACGTR 1 cut(s) 1295
BsaJI CCNNGG 4 cut(s) 36, 667, 938, 1377
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 1246, 1538
Bse1I ACTGG 3 cut(s) 477, 533, 706
BseBI CCWGG 3 cut(s) 37, 918, 1399
BseDI CCNNGG 4 cut(s) 36, 667, 938, 1377
BseGI GGATG 5 cut(s) 189, 610, 779, 1081, 1543
BseLI CCNNNNNNNGG 3 cut(s) 409, 1246, 1538
BseMII CTCAG 3 cut(s) 36, 348, 617
BseNI ACTGG 3 cut(s) 477, 533, 706
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 4 cut(s) 115, 393, 836, 1551
BseYI CCCAGC 1 cut(s) 384
BshFI GGCC 3 cut(s) 13, 352, 1376
BshNI GGYRCC 2 cut(s) 479, 1236
BsiHKAI GWGCWC 1 cut(s) 1228
BsiSI CCGG 1 cut(s) 669
BslFI GGGAC 1 cut(s) 725
BslI CCNNNNNNNGG 3 cut(s) 409, 1246, 1538
BsmAI GTCTC 1 cut(s) 1437
BsmFI GGGAC 1 cut(s) 725
BsmI GAATGC 1 cut(s) 1079
BsnI GGCC 3 cut(s) 13, 352, 1376
Bsp1286I GDGCHC 1 cut(s) 1228
Bsp143I GATC 4 cut(s) 412, 1105, 1344, 1439
BspACI CCGC 3 cut(s) 14, 983, 1467
BspANI GGCC 3 cut(s) 13, 352, 1376
BspCNI CTCAG 3 cut(s) 35, 349, 618
BspLI GGNNCC 3 cut(s) 481, 1238, 1282
BspMI ACCTGC 1 cut(s) 1701
BspPI GGATC 2 cut(s) 420, 1113
BspQI GCTCTTC 1 cut(s) 1233
BspT107I GGYRCC 2 cut(s) 479, 1236
BsrI ACTGG 3 cut(s) 477, 533, 706
BssECI CCNNGG 4 cut(s) 36, 667, 938, 1377
BssMI GATC 4 cut(s) 412, 1105, 1344, 1439
BssNAI GTATAC 1 cut(s) 880
BssT1I CCWWGG 2 cut(s) 938, 1377
Bst1107I GTATAC 1 cut(s) 880
Bst2UI CCWGG 3 cut(s) 37, 918, 1399
Bst4CI ACNGT 8 cut(s) 29, 748, 850, 1055, 1223, 1263, 1310, 1394
Bst6I CTCTTC 2 cut(s) 590, 1233
BstAPI GCANNNNNTGC 2 cut(s) 109, 1043
BstBAI YACGTR 1 cut(s) 1295
BstC8I GCNNGC 2 cut(s) 11, 1708
BstDEI CTNAG 7 cut(s) 22, 357, 416, 467, 626, 639, 1472
BstF5I GGATG 5 cut(s) 189, 610, 779, 1081, 1543
BstKTI GATC 4 cut(s) 415, 1108, 1347, 1442
BstMAI GTCTC 1 cut(s) 1437
BstMBI GATC 4 cut(s) 412, 1105, 1344, 1439
BstMWI GCNNNNNNNGC 9 cut(s) 109, 387, 446, 704, 799, 824, 1043, 1382, 1456
BstNI CCWGG 3 cut(s) 37, 918, 1399
BstSCI CCNGG 4 cut(s) 35, 667, 916, 1397
BstSFI CTRYAG 2 cut(s) 765, 1219
BstV1I GCAGC 4 cut(s) 115, 393, 836, 1551
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BstZ17I GTATAC 1 cut(s) 880
BsuRI GGCC 3 cut(s) 13, 352, 1376
BtgZI GCGATG 1 cut(s) 1623
BtsCI GGATG 5 cut(s) 189, 610, 779, 1081, 1543
BtsIMutI CAGTG 4 cut(s) 744, 1060, 1228, 1306
BveI ACCTGC 1 cut(s) 1701
Cac8I GCNNGC 2 cut(s) 11, 1708
CaiI CAGNNNCTG 1 cut(s) 1398
Cfr13I GGNCC 4 cut(s) 65, 893, 1010, 1280
Csp6I GTAC 7 cut(s) 267, 480, 742, 869, 1259, 1337, 1395
CviAII CATG 3 cut(s) 592, 1023, 1561
CviQI GTAC 7 cut(s) 267, 480, 742, 869, 1259, 1337, 1395
DdeI CTNAG 7 cut(s) 22, 357, 416, 467, 626, 639, 1472
DpnI GATC 4 cut(s) 414, 1107, 1346, 1441
DpnII GATC 4 cut(s) 412, 1105, 1344, 1439
DraIII CACNNNGTG 1 cut(s) 1310
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 590, 1233
EarI CTCTTC 2 cut(s) 590, 1233
Eco130I CCWWGG 2 cut(s) 938, 1377
Eco47I GGWCC 4 cut(s) 65, 893, 1010, 1280
Eco57I CTGAAG 2 cut(s) 291, 1472
EcoRII CCWGG 3 cut(s) 35, 916, 1397
EcoT14I CCWWGG 2 cut(s) 938, 1377
EcoT22I ATGCAT 1 cut(s) 1081
ErhI CCWWGG 2 cut(s) 938, 1377
FaeI CATG 3 cut(s) 595, 1026, 1564
FalI AAGNNNNNCTT 6 cut(s) 569, 601, 632, 664, 1370, 1402
FaqI GGGAC 1 cut(s) 725
FatI CATG 3 cut(s) 591, 1022, 1560
FauNDI CATATG 1 cut(s) 1446
FbaI TGATCA 1 cut(s) 1344
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 5 cut(s) 14, 104, 382, 825, 1565
FokI GGATG 5 cut(s) 196, 617, 786, 1088, 1550
Fsp4HI GCNGC 5 cut(s) 14, 104, 382, 825, 1565
FspBI CTAG 2 cut(s) 782, 1007
GluI GCNGC 5 cut(s) 14, 104, 382, 825, 1565
GsaI CCCAGC 1 cut(s) 388
GsuI CTGGAG 4 cut(s) 193, 723, 939, 1420
HaeIII GGCC 3 cut(s) 13, 352, 1376
HapII CCGG 1 cut(s) 669
Hin1II CATG 3 cut(s) 595, 1026, 1564
HincII GTYRAC 1 cut(s) 1266
HindII GTYRAC 1 cut(s) 1266
HinfI GANTC 3 cut(s) 161, 728, 1592
HpaII CCGG 1 cut(s) 669
HphI GGTGA 3 cut(s) 447, 906, 1511
Hpy166II GTNNAC 5 cut(s) 744, 880, 1181, 1266, 1681
Hpy188I TCNGA 4 cut(s) 25, 153, 241, 627
Hpy188III TCNNGA 5 cut(s) 172, 214, 356, 410, 1211
Hpy8I GTNNAC 5 cut(s) 744, 880, 1181, 1266, 1681
HpyAV CCTTC 3 cut(s) 236, 266, 1396
HpyCH4III ACNGT 8 cut(s) 29, 748, 850, 1055, 1223, 1263, 1310, 1394
HpyCH4IV ACGT 2 cut(s) 1294, 1692
HpyF10VI GCNNNNNNNGC 9 cut(s) 109, 387, 446, 704, 799, 824, 1043, 1382, 1456
HpyF3I CTNAG 7 cut(s) 22, 357, 416, 467, 626, 639, 1472
HpySE526I ACGT 2 cut(s) 1294, 1692
Hsp92II CATG 3 cut(s) 595, 1026, 1564
KpnI GGTACC 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 1344
Kzo9I GATC 4 cut(s) 412, 1105, 1344, 1439
LguI GCTCTTC 1 cut(s) 1233
LmnI GCTCC 3 cut(s) 704, 778, 1663
Lsp1109I GCAGC 4 cut(s) 115, 393, 836, 1551
LweI GCATC 4 cut(s) 922, 970, 1066, 1133
MaeI CTAG 2 cut(s) 782, 1007
MaeII ACGT 2 cut(s) 1294, 1692
MaeIII GTNAC 4 cut(s) 365, 419, 985, 1069
MalI GATC 4 cut(s) 414, 1107, 1346, 1441
MboI GATC 4 cut(s) 412, 1105, 1344, 1439
MboII GAAGA 7 cut(s) 332, 524, 607, 1220, 1263, 1465, 1526
MfeI CAATTG 1 cut(s) 1668
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 1228
MluCI AATT 7 cut(s) 55, 285, 312, 608, 1633, 1650, 1668
MmeI TCCRAC 3 cut(s) 156, 790, 871
Mph1103I ATGCAT 1 cut(s) 1081
MseI TTAA 7 cut(s) 405, 546, 573, 611, 656, 1244, 1569
MslI CAYNNNNRTG 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 384
MspI CCGG 1 cut(s) 669
MspR9I CCNGG 4 cut(s) 37, 669, 918, 1399
MunI CAATTG 1 cut(s) 1668
Mva1269I GAATGC 1 cut(s) 1079
MvaI CCWGG 3 cut(s) 37, 918, 1399
MwoI GCNNNNNNNGC 9 cut(s) 109, 387, 446, 704, 799, 824, 1043, 1382, 1456
NciI CCSGG 1 cut(s) 669
NdeI CATATG 1 cut(s) 1446
NdeII GATC 4 cut(s) 412, 1105, 1344, 1439
NlaIII CATG 3 cut(s) 595, 1026, 1564
NlaIV GGNNCC 3 cut(s) 481, 1238, 1282
NmuCI GTSAC 3 cut(s) 365, 985, 1069
NsiI ATGCAT 1 cut(s) 1081
PciSI GCTCTTC 1 cut(s) 1233
PctI GAATGC 1 cut(s) 1079
PfeI GAWTC 3 cut(s) 161, 728, 1592
PflMI CCANNNNNTGG 1 cut(s) 1538
PkrI GCNGC 5 cut(s) 15, 105, 383, 826, 1566
Ppu21I YACGTR 1 cut(s) 1295
PshBI ATTAAT 1 cut(s) 1244
PsiI TTATAA 1 cut(s) 1050
Psp6I CCWGG 3 cut(s) 35, 916, 1397
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 3 cut(s) 35, 916, 1397
PspN4I GGNNCC 3 cut(s) 481, 1238, 1282
PspPI GGNCC 4 cut(s) 65, 893, 1010, 1280
PstNI CAGNNNCTG 1 cut(s) 1398
PsuI RGATCY 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 384
RsaI GTAC 7 cut(s) 268, 481, 743, 870, 1260, 1338, 1396
RsaNI GTAC 7 cut(s) 267, 480, 742, 869, 1259, 1337, 1395
RseI CAYNNNNRTG 1 cut(s) 560
SapI GCTCTTC 1 cut(s) 1233
SaqAI TTAA 7 cut(s) 405, 546, 573, 611, 656, 1244, 1569
SatI GCNGC 5 cut(s) 14, 104, 382, 825, 1565
Sau3AI GATC 4 cut(s) 412, 1105, 1344, 1439
Sau96I GGNCC 4 cut(s) 65, 893, 1010, 1280
ScaI AGTACT 2 cut(s) 268, 1338
ScrFI CCNGG 4 cut(s) 37, 669, 918, 1399
SduI GDGCHC 1 cut(s) 1228
SfaNI GCATC 4 cut(s) 922, 970, 1066, 1133
SfcI CTRYAG 2 cut(s) 765, 1219
SinI GGWCC 4 cut(s) 65, 893, 1010, 1280
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 7 cut(s) 55, 285, 312, 608, 1633, 1650, 1668
SsiI CCGC 3 cut(s) 14, 983, 1467
SspMI CTAG 2 cut(s) 782, 1007
StyD4I CCNGG 4 cut(s) 35, 667, 916, 1397
StyI CCWWGG 2 cut(s) 938, 1377
TaaI ACNGT 8 cut(s) 29, 748, 850, 1055, 1223, 1263, 1310, 1394
TaiI ACGT 2 cut(s) 1297, 1695
TaqI TCGA 1 cut(s) 840
TasI AATT 7 cut(s) 55, 285, 312, 608, 1633, 1650, 1668
TatI WGTACW 4 cut(s) 266, 868, 1258, 1336
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 3 cut(s) 161, 728, 1592
Tru1I TTAA 7 cut(s) 405, 546, 573, 611, 656, 1244, 1569
Tru9I TTAA 7 cut(s) 405, 546, 573, 611, 656, 1244, 1569
TscAI CASTG 4 cut(s) 751, 1060, 1228, 1313
TseFI GTSAC 3 cut(s) 365, 985, 1069
TseI GCWGC 4 cut(s) 103, 381, 824, 1564
Tsp45I GTSAC 3 cut(s) 365, 985, 1069
TspDTI ATGAA 9 cut(s) 211, 215, 333, 608, 621, 724, 963, 1584, 1626
TspGWI ACGGA 1 cut(s) 1088
TspRI CASTG 4 cut(s) 751, 1060, 1228, 1313
Van91I CCANNNNNTGG 1 cut(s) 1538
VpaK11BI GGWCC 4 cut(s) 65, 893, 1010, 1280
VspI ATTAAT 1 cut(s) 1244
XapI RAATTY 1 cut(s) 1633
XcmI CCANNNNNNNNNTGG 1 cut(s) 1020
XmiI GTMKAC 1 cut(s) 879
XspI CTAG 2 cut(s) 782, 1007
ZrmI AGTACT 2 cut(s) 268, 1338
Zsp2I ATGCAT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.