Rroxscaffold_7G00170420

heparanase-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
10845902 .. 10849142
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170420.1

Sequence Viewer

Length: 1617 bp
ATGTGTGAAATAATGCGTGCTCTGGTTCTTCTCTTCTTCGTTTGCTTCTGGCTGTACGATGTCACTCACAACCACAACTCGATCTCTGTGGCTTCACAGAGCACGGAGGAAGACACTGTCTTTGTCAATGGAACAGTTGCAATCGGAAGCATAGACGATGATTTTGTTTGTGCTACAATGGATTGGTGGCCGCCGGAGAAATGCGACTATGGAACTTGCAGCTGGGGCAATGCTTCTCTTCTTAATCTAGACCTTGGCAACGATATACTTTTGAATGCAATAAAAGCATTTTCACCCTTGAAACTTAGGCTGGGCGGCACCTTACAAGACAAAGTCATATACCAGACACAAGACAGTCCAAAACATCATACTTCATTTGTCAAAGATAGTTCACTGTTGTTTGGCTTCTCTGATGGTTACTTATCTATGCCTAGATGGGATGAACTGAACATTTTGTTCAAGAATGCTGGGGCTGTCGTTATATTTGGACTAAATGCACTGCAAGGCAGGACCATAGATTCCCATGGTGCTGCTGTGGGTGATTGGAATGCGAGTAATGCTGAATCTTTTATAAGATATACAGTCAACAAAGGATACACAATTCATGGTTGGGAGCTAGGAAATGAACTATGTGGGAGTGGAGTTGGAACAAGAGTCACAGCAGACCAATACGCTTCGGACATAAACTCTCTCCATAACAAGGTGCAAGATATTTATTCAGGTTCTGAATTAGCTAAGCCACTAGTCTTGGCACCAGGAGGGTTCTTTGATTCCAGTTGGTTCTCAGATTTTGTTGATAAAGCACCTCAGTCTGTTCAAGTACTCACACACCACATATACAACCTTGGTCCAGGTAGTGCCCCGGATCTTGTTGACAAGATCCTCGATCCATCTGTTCTTGATGGTATTTCCAAAACCTTCAGTGACCTACAAATGCTAATTAAGAATTCAAAAACTTCAGCAGTGGGATGGGTTGGTGAATCAGGAGGTGCTTACAACAGTGGTCACAATCTTGTTACAAATGCATTTGTATTCAGTTTCTGGTACCTGGACCAGCTTGGGATGGCAGCATCTTATGATACGAAAACATATTGCAGACAAACACTCATTGGTGGAAATTATGGCCTCCTTGACATCCAAACCTTTCAACCAAATCCTGATTATTACAGCGCTCTTCTTTGGCATCATCTAATGGGAAACAATGTCCTGTCAACAAGCTTTTCCGGGACAAAGAAACTGCGCACTTACTCTCATTGTTCCAAGAAAACACAAGGAATCACAGTGCTGCTCATCAACTTAGACGGTAACACTACAGTTCAAGTCGATGTTTCAACTGAAAATGGTGGCAGCCGCAGTACTTTGCATTTGGAACAAGGCCTCAAGGATTCTAAAGCAACCAAGAACGATGTAAGAGAAGAATACCACCTAACAGCTAAAGATGGGGACTTGCACAGCCGAGTAATGCTTCTGAATGGGAAAGAACTGACCGTAGATTCAGCAGGGCAAATCCCAAGCTTGGAGCCAATGATAGTAGGGATGTCAGATCCCACCTCGGTGGCACCTTTCTCTATTGTATTTGTTCACATTCCCAACATAACTGTACCTGCTTGTAAATAG

Protein Analysis

538

Amino Acids

58.87

Weight (kDa)

5.31

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 39 - 354 2.7e-149 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 572
Acc16I TGCGCA 1 cut(s) 1241
Acc36I ACCTGC 1 cut(s) 1612
Acc65I GGTACC 1 cut(s) 1044
AccB1I GGYRCC 4 cut(s) 317, 751, 1044, 1558
AciI CCGC 3 cut(s) 191, 315, 1351
AclWI GGATC 4 cut(s) 873, 874, 881, 1538
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 1 cut(s) 946
AcuI CTGAAG 2 cut(s) 904, 942
AfaI GTAC 5 cut(s) 56, 822, 1046, 1357, 1602
AfeI AGCGCT 1 cut(s) 1171
AfiI CCNNNNNNNGG 2 cut(s) 700, 1516
AgsI TTSAA 8 cut(s) 274, 301, 460, 818, 951, 1148, 1319, 1332
AhlI ACTAGT 1 cut(s) 742
AjnI CCWGG 3 cut(s) 754, 850, 1047
AleI CACNNNNGTG 1 cut(s) 1553
AluBI AGCT 7 cut(s) 222, 616, 734, 1057, 1218, 1433, 1515
AluI AGCT 7 cut(s) 222, 616, 734, 1057, 1218, 1433, 1515
Alw21I GWGCWC 2 cut(s) 22, 104
AlwI GGATC 4 cut(s) 873, 874, 881, 1538
AlwNI CAGNNNCTG 2 cut(s) 725, 1041
Aor51HI AGCGCT 1 cut(s) 1171
AoxI GGCC 3 cut(s) 188, 1123, 1375
ApeKI GCWGC 5 cut(s) 219, 530, 1067, 1285, 1347
ApoI RAATTY 1 cut(s) 946
ArsI GACNNNNNNTTYG 4 cut(s) 104, 136, 146, 178
Asp718I GGTACC 1 cut(s) 1044
AspLEI GCGC 2 cut(s) 1172, 1242
AspS9I GGNCC 3 cut(s) 510, 848, 1051
AsuC2I CCSGG 2 cut(s) 863, 1225
AsuHPI GGTGA 3 cut(s) 285, 551, 989
AvaII GGWCC 3 cut(s) 510, 848, 1051
BaeGI GKGCMC 1 cut(s) 862
BanI GGYRCC 4 cut(s) 317, 751, 1044, 1558
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 22, 104
BbvI GCAGC 5 cut(s) 231, 517, 1079, 1272, 1359
BccI CCATC 7 cut(s) 407, 429, 896, 898, 963, 1057, 1433
BciT130I CCWGG 3 cut(s) 756, 852, 1049
BciVI GTATCC 1 cut(s) 587
BcnI CCSGG 2 cut(s) 863, 1225
BcuI ACTAGT 1 cut(s) 742
BfaI CTAG 4 cut(s) 248, 432, 617, 743
BfmI CTRYAG 1 cut(s) 1311
BfoI RGCGCY 1 cut(s) 1173
BfuAI ACCTGC 1 cut(s) 1612
BfuI GTATCC 1 cut(s) 587
BisI GCNGC 8 cut(s) 191, 220, 316, 531, 1068, 1286, 1348, 1351
BlpI GCTNAGC 1 cut(s) 735
BlsI GCNGC 8 cut(s) 192, 221, 317, 532, 1069, 1287, 1349, 1352
BmcAI AGTACT 2 cut(s) 822, 1357
Bme1390I CCNGG 5 cut(s) 756, 852, 863, 1049, 1225
Bme18I GGWCC 3 cut(s) 510, 848, 1051
BmgT120I GGNCC 3 cut(s) 510, 848, 1051
BmiI GGNNCC 5 cut(s) 319, 753, 1046, 1521, 1560
BmrFI CCNGG 5 cut(s) 756, 852, 863, 1049, 1225
BmsI GCATC 2 cut(s) 1079, 1192
BpiI GAAGAC 1 cut(s) 117
Bpu1102I GCTNAGC 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 1364
BpuMI CCSGG 2 cut(s) 863, 1225
BsaJI CCNNGG 5 cut(s) 253, 523, 844, 861, 1551
Bsc4I CCNNNNNNNGG 2 cut(s) 700, 1516
Bse1I ACTGG 1 cut(s) 774
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 3 cut(s) 756, 852, 1049
BseDI CCNNGG 5 cut(s) 253, 523, 844, 861, 1551
BseGI GGATG 5 cut(s) 445, 974, 1068, 1134, 1542
BseLI CCNNNNNNNGG 2 cut(s) 700, 1516
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 798, 821
BseNI ACTGG 1 cut(s) 774
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 5 cut(s) 231, 517, 1079, 1272, 1359
BseYI CCCAGC 3 cut(s) 222, 310, 467
BshFI GGCC 3 cut(s) 190, 1125, 1377
BshNI GGYRCC 4 cut(s) 317, 751, 1044, 1558
BsiHKAI GWGCWC 2 cut(s) 22, 104
BsiSI CCGG 3 cut(s) 194, 863, 1224
BslFI GGGAC 2 cut(s) 1240, 1457
BslI CCNNNNNNNGG 2 cut(s) 700, 1516
BsmFI GGGAC 2 cut(s) 1240, 1457
BsmI GAATGC 3 cut(s) 280, 469, 553
BsnI GGCC 3 cut(s) 190, 1125, 1377
Bsp1286I GDGCHC 3 cut(s) 22, 104, 862
Bsp143I GATC 5 cut(s) 81, 865, 879, 886, 1543
Bsp1720I GCTNAGC 1 cut(s) 735
Bsp19I CCATGG 1 cut(s) 523
BspACI CCGC 3 cut(s) 191, 315, 1351
BspANI GGCC 3 cut(s) 190, 1125, 1377
BspCNI CTCAG 2 cut(s) 797, 820
BspLI GGNNCC 5 cut(s) 319, 753, 1046, 1521, 1560
BspMI ACCTGC 1 cut(s) 1612
BspPI GGATC 4 cut(s) 873, 874, 881, 1538
BspQI GCTCTTC 1 cut(s) 1179
BspT107I GGYRCC 4 cut(s) 317, 751, 1044, 1558
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 774
BssECI CCNNGG 5 cut(s) 253, 523, 844, 861, 1551
BssMI GATC 5 cut(s) 81, 865, 879, 886, 1543
BssT1I CCWWGG 3 cut(s) 253, 523, 844
Bst2UI CCWGG 3 cut(s) 756, 852, 1049
Bst6I CTCTTC 3 cut(s) 38, 243, 1179
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 5 cut(s) 305, 735, 784, 807, 1297
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 5 cut(s) 445, 974, 1068, 1134, 1542
BstH2I RGCGCY 1 cut(s) 1173
BstHHI GCGC 2 cut(s) 1172, 1242
BstKTI GATC 5 cut(s) 84, 868, 882, 889, 1546
BstMBI GATC 5 cut(s) 81, 865, 879, 886, 1543
BstMWI GCNNNNNNNGC 3 cut(s) 225, 284, 557
BstNI CCWGG 3 cut(s) 756, 852, 1049
BstSCI CCNGG 5 cut(s) 754, 850, 861, 1047, 1223
BstSFI CTRYAG 1 cut(s) 1311
BstSLI GKGCMC 1 cut(s) 862
BstV1I GCAGC 5 cut(s) 231, 517, 1079, 1272, 1359
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 3 cut(s) 865, 879, 1543
BstXI CCANNNNNNTGG 1 cut(s) 1555
BstYI RGATCY 3 cut(s) 865, 879, 1543
BsuI GTATCC 1 cut(s) 587
BsuRI GGCC 3 cut(s) 190, 1125, 1377
BtgI CCRYGG 1 cut(s) 523
BtsCI GGATG 5 cut(s) 445, 974, 1068, 1134, 1542
BtsI GCAGTG 2 cut(s) 497, 969
BtsIMutI CAGTG 7 cut(s) 114, 392, 497, 928, 969, 1006, 1287
BveI ACCTGC 1 cut(s) 1612
Cac8I GCNNGC 1 cut(s) 18
CaiI CAGNNNCTG 2 cut(s) 725, 1041
CfoI GCGC 2 cut(s) 1172, 1242
Cfr13I GGNCC 3 cut(s) 510, 848, 1051
Csp6I GTAC 5 cut(s) 55, 821, 1045, 1356, 1601
CspCI CAANNNNNGTGG 2 cut(s) 729, 764
CviAII CATG 2 cut(s) 524, 605
CviQI GTAC 5 cut(s) 55, 821, 1045, 1356, 1601
DdeI CTNAG 5 cut(s) 305, 735, 784, 807, 1297
DpnI GATC 5 cut(s) 83, 867, 881, 888, 1545
DpnII GATC 5 cut(s) 81, 865, 879, 886, 1543
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 3 cut(s) 38, 243, 1179
EarI CTCTTC 3 cut(s) 38, 243, 1179
Eco130I CCWWGG 3 cut(s) 253, 523, 844
Eco147I AGGCCT 1 cut(s) 1377
Eco47I GGWCC 3 cut(s) 510, 848, 1051
Eco47III AGCGCT 1 cut(s) 1171
Eco57I CTGAAG 2 cut(s) 904, 942
EcoRI GAATTC 1 cut(s) 946
EcoRII CCWGG 3 cut(s) 754, 850, 1047
EcoT14I CCWWGG 3 cut(s) 253, 523, 844
EcoT22I ATGCAT 1 cut(s) 1027
ErhI CCWWGG 3 cut(s) 253, 523, 844
FaeI CATG 2 cut(s) 527, 608
FaqI GGGAC 2 cut(s) 1240, 1457
FatI CATG 2 cut(s) 523, 604
Fnu4HI GCNGC 8 cut(s) 191, 220, 316, 531, 1068, 1286, 1348, 1351
FokI GGATG 5 cut(s) 452, 981, 1075, 1121, 1549
Fsp4HI GCNGC 8 cut(s) 191, 220, 316, 531, 1068, 1286, 1348, 1351
FspBI CTAG 4 cut(s) 248, 432, 617, 743
FspI TGCGCA 1 cut(s) 1241
GlaI GCGC 2 cut(s) 1171, 1241
GluI GCNGC 8 cut(s) 191, 220, 316, 531, 1068, 1286, 1348, 1351
GsaI CCCAGC 3 cut(s) 226, 314, 471
HaeII RGCGCY 1 cut(s) 1173
HaeIII GGCC 3 cut(s) 190, 1125, 1377
HapII CCGG 3 cut(s) 194, 863, 1224
HhaI GCGC 2 cut(s) 1172, 1242
Hin1II CATG 2 cut(s) 527, 608
Hin6I GCGC 2 cut(s) 1170, 1240
HinP1I GCGC 2 cut(s) 1170, 1240
HincII GTYRAC 3 cut(s) 586, 874, 1212
HindII GTYRAC 3 cut(s) 586, 874, 1212
HindIII AAGCTT 2 cut(s) 1216, 1513
HinfI GANTC 8 cut(s) 518, 563, 654, 770, 980, 1275, 1385, 1493
HpaII CCGG 3 cut(s) 194, 863, 1224
HphI GGTGA 3 cut(s) 285, 551, 989
Hpy166II GTNNAC 5 cut(s) 392, 586, 874, 1212, 1582
Hpy188I TCNGA 7 cut(s) 146, 412, 679, 727, 787, 1470, 1543
Hpy188III TCNNGA 5 cut(s) 248, 460, 899, 984, 1157
Hpy8I GTNNAC 5 cut(s) 392, 586, 874, 1212, 1582
HpyAV CCTTC 1 cut(s) 928
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 284, 557
HpyF3I CTNAG 5 cut(s) 305, 735, 784, 807, 1297
Hsp92II CATG 2 cut(s) 527, 608
HspAI GCGC 2 cut(s) 1170, 1240
KpnI GGTACC 1 cut(s) 1048
Kzo9I GATC 5 cut(s) 81, 865, 879, 886, 1543
LguI GCTCTTC 1 cut(s) 1179
LmnI GCTCC 2 cut(s) 613, 1519
Lsp1109I GCAGC 5 cut(s) 231, 517, 1079, 1272, 1359
LweI GCATC 2 cut(s) 1079, 1192
MaeI CTAG 4 cut(s) 248, 432, 617, 743
MaeIII GTNAC 7 cut(s) 61, 416, 655, 923, 1004, 1015, 1304
MalI GATC 5 cut(s) 83, 867, 881, 888, 1545
MboI GATC 5 cut(s) 81, 865, 879, 886, 1543
MboII GAAGA 7 cut(s) 20, 25, 28, 122, 230, 1166, 1427
MflI RGATCY 3 cut(s) 865, 879, 1543
MhlI GDGCHC 3 cut(s) 22, 104, 862
MluCI AATT 5 cut(s) 600, 728, 939, 946, 1117
MlyI GAGTC 1 cut(s) 663
MmeI TCCRAC 1 cut(s) 625
MnlI CCTC 8 cut(s) 100, 752, 816, 893, 980, 1136, 1388, 1561
Mph1103I ATGCAT 1 cut(s) 1027
MseI TTAA 2 cut(s) 243, 942
MslI CAYNNNNRTG 1 cut(s) 1553
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 3 cut(s) 194, 863, 1224
MspR9I CCNGG 5 cut(s) 756, 852, 863, 1049, 1225
Mva1269I GAATGC 3 cut(s) 280, 469, 553
MvaI CCWGG 3 cut(s) 756, 852, 1049
MwoI GCNNNNNNNGC 3 cut(s) 225, 284, 557
NciI CCSGG 2 cut(s) 863, 1225
NcoI CCATGG 1 cut(s) 523
NdeII GATC 5 cut(s) 81, 865, 879, 886, 1543
NlaIII CATG 2 cut(s) 527, 608
NlaIV GGNNCC 5 cut(s) 319, 753, 1046, 1521, 1560
NmeAIII GCCGAG 1 cut(s) 1481
NmuCI GTSAC 4 cut(s) 61, 655, 923, 1004
NsbI TGCGCA 1 cut(s) 1241
NsiI ATGCAT 1 cut(s) 1027
OliI CACNNNNGTG 1 cut(s) 1553
PceI AGGCCT 1 cut(s) 1377
PciSI GCTCTTC 1 cut(s) 1179
PctI GAATGC 3 cut(s) 280, 469, 553
PfeI GAWTC 7 cut(s) 518, 563, 770, 980, 1275, 1385, 1493
PflFI GACNNNGTC 2 cut(s) 116, 332
PfoI TCCNGGA 1 cut(s) 1223
PkrI GCNGC 8 cut(s) 192, 221, 317, 532, 1069, 1287, 1349, 1352
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
PsiI TTATAA 1 cut(s) 572
Psp6I CCWGG 3 cut(s) 754, 850, 1047
PspFI CCCAGC 3 cut(s) 222, 310, 467
PspGI CCWGG 3 cut(s) 754, 850, 1047
PspN4I GGNNCC 5 cut(s) 319, 753, 1046, 1521, 1560
PspPI GGNCC 3 cut(s) 510, 848, 1051
PstNI CAGNNNCTG 2 cut(s) 725, 1041
PsuI RGATCY 3 cut(s) 865, 879, 1543
PsyI GACNNNGTC 2 cut(s) 116, 332
PvuII CAGCTG 1 cut(s) 222
RsaI GTAC 5 cut(s) 56, 822, 1046, 1357, 1602
RsaNI GTAC 5 cut(s) 55, 821, 1045, 1356, 1601
RseI CAYNNNNRTG 1 cut(s) 1553
SapI GCTCTTC 1 cut(s) 1179
SaqAI TTAA 2 cut(s) 243, 942
SatI GCNGC 8 cut(s) 191, 220, 316, 531, 1068, 1286, 1348, 1351
Sau3AI GATC 5 cut(s) 81, 865, 879, 886, 1543
Sau96I GGNCC 3 cut(s) 510, 848, 1051
ScaI AGTACT 2 cut(s) 822, 1357
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 5 cut(s) 756, 852, 863, 1049, 1225
SduI GDGCHC 3 cut(s) 22, 104, 862
SfaNI GCATC 2 cut(s) 1079, 1192
SfcI CTRYAG 1 cut(s) 1311
SinI GGWCC 3 cut(s) 510, 848, 1051
SmiMI CAYNNNNRTG 1 cut(s) 1553
SmlI CTYRAG 1 cut(s) 1379
SmoI CTYRAG 1 cut(s) 1379
SpeI ACTAGT 1 cut(s) 742
Sse9I AATT 5 cut(s) 600, 728, 939, 946, 1117
SseBI AGGCCT 1 cut(s) 1377
SsiI CCGC 3 cut(s) 191, 315, 1351
SspMI CTAG 4 cut(s) 248, 432, 617, 743
StuI AGGCCT 1 cut(s) 1377
StyD4I CCNGG 5 cut(s) 754, 850, 861, 1047, 1223
StyI CCWWGG 3 cut(s) 253, 523, 844
TaqI TCGA 3 cut(s) 80, 885, 1323
TasI AATT 5 cut(s) 600, 728, 939, 946, 1117
TatI WGTACW 2 cut(s) 820, 1355
TauI GCSGC 3 cut(s) 193, 318, 1353
TfiI GAWTC 7 cut(s) 518, 563, 770, 980, 1275, 1385, 1493
Tru1I TTAA 2 cut(s) 243, 942
Tru9I TTAA 2 cut(s) 243, 942
TscAI CASTG 7 cut(s) 121, 399, 504, 928, 969, 1006, 1287
TseFI GTSAC 4 cut(s) 61, 655, 923, 1004
TseI GCWGC 5 cut(s) 219, 530, 1067, 1285, 1347
Tsp45I GTSAC 4 cut(s) 61, 655, 923, 1004
TspDTI ATGAA 4 cut(s) 363, 456, 593, 639
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 7 cut(s) 121, 399, 504, 928, 969, 1006, 1287
Tth111I GACNNNGTC 2 cut(s) 116, 332
VpaK11BI GGWCC 3 cut(s) 510, 848, 1051
XapI RAATTY 1 cut(s) 946
XbaI TCTAGA 1 cut(s) 247
XspI CTAG 4 cut(s) 248, 432, 617, 743
ZrmI AGTACT 2 cut(s) 822, 1357
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.