FvH4_1g02100

heparanase-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
1112892 .. 1117180
4289 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02100.t1

Sequence Viewer

Length: 1680 bp
ATGGGTTCTCAAAACTGGAGAATGGGGATGTGTTTCTGGGTGTGTTTGATTGGTTTCTTGAGCTTCATTCATTGTGTGAGTTCAGAAGGAGAGGGAATAGGAGGAGGCAGTGTTGAAGCTTTGATTAGAATTGATGGGAAAGAAGCCATTGCGAAAGTTGATGAAGATTTTATCTGTGCAACTTTGGATTGGTGGCCTCCTGAGAAATGTGACTATGGAACTTGCAGCTGGGGCAAAACTTCTCTCCTTAATTTGGATCTAAGTAATACTATCTTATCAAATGCCATAAAAGCTTTTTCACCATTGAAACTTAGATTGGGTGGTACCTTGCAAGACCAAATCATATATGATACAGAAGACAATAAAAAACCTTGCCCCCCGATTCCTTTTGTTGAAAACAACACAACATTGTTTGGTGAGATGTTTGGTTTTAATGAGGCTTGCCTACCAATGAAGAGATGGGATGAACTAAACTCCTTCTTTCTGAGAACAGGGGCTAAGATTGTCTTTGGATTAAATGTCCTCACGGGAAAAACATTCAAGAATAATATCCCTGCAATTGGAGACTGGGACTTCACCAATGCCGAATCTTTCATTCGATACACTGTCAAAAATAACTACTCTGTTGCTGGATGGGAGCTTGGGAATGAGCTATGTGGGAAGGGAGTTGGAACGAGCATATCAGCAAGTCAGTATGCCAATGATTCAGCTTCTCTGCGTAACATAGTACAGGAAATATACAAGGGTGGTGCTGGACCAAAGCCACTAATCTTAGCACCTGGAGGGTTCTTTGATGGACCTTGGTTCAAAGAAGTTGCAGATAAAAGCACTACAACTTTAGATGCGCTCACACACCATGTATATAATCTAGGGCCAGGGGTTGATAATAACCTTATTGAAAAGATTCTTGACCCGGAGTCTCTGGATAGTATGGTGGACACATATAGCAAGCTTCAAAACATCCTGAAGACCTCTGCAACTTCAGCAACAGCATGGGTTGGGGAATCAGGAGGTGCTTGGAACAGTGGTCATCATCTTGTCACGGATGCATTCGTGTTTAGTTTCTGGTATCTGGACCAGCTTGGTATGTCTGCAGTTTATGATACCAAAACATATTGCAGACAGACCTTGGTTGGTGGAAACTATGGTTTACTCAACACTACTACTTTTGTTCCCAATCCAGACTACTACAGTGCTCTTCTTTGGCACCGATTAATGGGAAGAAATGTACTGGCAACGAGGTTTGGTGGACCGAAAAAGATACGTGCTTATACACACTGTGCAAAACAATCTAAAGGGATTGTAGTCCTATTGATCAACCTACACAACACCACCGTTGTTCAGGCAAGGGTTGCCTTCAACAGTACCTGGAGCTTGCGACATAGACACAAATCTCACAAGTCTTATAGATCACATATGAAGGAACTTAATGGTCTAAGAAGCAGGGCAGAAAGAGTGAGAGGTGACAGAGAAAGAGAAGAATACCATTTGACACCAAAGGATGGAAATATACAGAGCCAAACCATGCTGCTTAATGGAAATGCTTTGAATCTGGATTCATCTGGGAACATACCTACATTAGAACCTGTTTTTGTAAATTCATCGCAGCCGATAATTGTTGCTCCATTTTCAATTGTTTTTGTTCACATACCATACGTTGTTCCCCCAGCTTGCAGGTAG

Protein Analysis

560

Amino Acids

62.0

Weight (kDa)

7.56

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 40 - 362 1.4e-146 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1665
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 323, 1206
AccB7I CCANNNNNTGG 1 cut(s) 1502
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 1 cut(s) 1597
AcuI CTGAAG 2 cut(s) 966, 986
AdeI CACNNNGTG 1 cut(s) 1280
AfaI GTAC 4 cut(s) 325, 729, 1230, 1366
AfiI CCNNNNNNNGG 4 cut(s) 253, 560, 1216, 1502
AhdI GACNNNNNGTC 1 cut(s) 916
AjnI CCWGG 3 cut(s) 778, 874, 1367
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
Alw21I GWGCWC 1 cut(s) 1198
Alw26I GTCTC 2 cut(s) 558, 924
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 1368
AoxI GGCC 2 cut(s) 194, 872
ApeKI GCWGC 3 cut(s) 225, 1528, 1606
ApoI RAATTY 1 cut(s) 1597
AseI ATTAAT 1 cut(s) 1214
Asp700I GAANNNNTTC 1 cut(s) 903
Asp718I GGTACC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 847
AspS9I GGNCC 5 cut(s) 755, 797, 872, 1075, 1250
AsuC2I CCSGG 1 cut(s) 914
AsuHPI GGTGA 4 cut(s) 291, 428, 568, 1475
AvaII GGWCC 4 cut(s) 755, 797, 1075, 1250
BanI GGYRCC 2 cut(s) 323, 1206
BbsI GAAGAC 2 cut(s) 363, 974
Bbv12I GWGCWC 1 cut(s) 1198
BbvI GCAGC 3 cut(s) 237, 1515, 1618
BccI CCATC 5 cut(s) 128, 453, 627, 788, 1496
BciT130I CCWGG 3 cut(s) 780, 876, 1369
BclI TGATCA 1 cut(s) 1314
BcnI CCSGG 1 cut(s) 914
BcoDI GTCTC 2 cut(s) 558, 924
BfaI CTAG 1 cut(s) 869
BfmI CTRYAG 2 cut(s) 1092, 1189
BfuAI ACCTGC 1 cut(s) 1665
BisI GCNGC 3 cut(s) 226, 1529, 1607
BlsI GCNGC 3 cut(s) 227, 1530, 1608
Bme1390I CCNGG 4 cut(s) 780, 876, 914, 1369
Bme18I GGWCC 4 cut(s) 755, 797, 1075, 1250
BmeRI GACNNNNNGTC 1 cut(s) 916
BmgT120I GGNCC 5 cut(s) 755, 797, 872, 1075, 1250
BmiI GGNNCC 2 cut(s) 325, 1208
BmrFI CCNGG 4 cut(s) 780, 876, 914, 1369
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 2 cut(s) 832, 1036
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 2 cut(s) 363, 974
BpmI CTGGAG 3 cut(s) 37, 801, 1390
BpuEI CTTGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 914
BsaAI YACGTR 1 cut(s) 1265
BsaJI CCNNGG 3 cut(s) 800, 875, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 560, 1216, 1502
Bse1I ACTGG 3 cut(s) 20, 572, 1236
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 3 cut(s) 780, 876, 1369
BseDI CCNNGG 3 cut(s) 800, 875, 1128
BseGI GGATG 6 cut(s) 33, 469, 638, 960, 1051, 1507
BseLI CCNNNNNNNGG 4 cut(s) 253, 560, 1216, 1502
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 192, 476
BseNI ACTGG 3 cut(s) 20, 572, 1236
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 237, 1515, 1618
BseYI CCCAGC 2 cut(s) 228, 1666
BshFI GGCC 2 cut(s) 196, 874
BshNI GGYRCC 2 cut(s) 323, 1206
BsiHKAI GWGCWC 1 cut(s) 1198
BsiSI CCGG 1 cut(s) 914
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 4 cut(s) 253, 560, 1216, 1502
BsmAI GTCTC 2 cut(s) 558, 924
BsmFI GGGAC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 1049
BsnI GGCC 2 cut(s) 196, 874
Bsp1286I GDGCHC 1 cut(s) 1198
Bsp143I GATC 3 cut(s) 256, 1314, 1409
BspANI GGCC 2 cut(s) 196, 874
BspCNI CTCAG 2 cut(s) 193, 477
BspLI GGNNCC 2 cut(s) 325, 1208
BspMAI CTGCAG 1 cut(s) 1096
BspMI ACCTGC 1 cut(s) 1665
BspPI GGATC 1 cut(s) 264
BspQI GCTCTTC 1 cut(s) 1203
BspT107I GGYRCC 2 cut(s) 323, 1206
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 3 cut(s) 20, 572, 1236
BssECI CCNNGG 3 cut(s) 800, 875, 1128
BssMI GATC 3 cut(s) 256, 1314, 1409
BssT1I CCWWGG 2 cut(s) 800, 1128
Bst2UI CCWGG 3 cut(s) 780, 876, 1369
Bst4CI ACNGT 6 cut(s) 607, 1025, 1193, 1280, 1336, 1364
Bst6I CTCTTC 2 cut(s) 449, 1203
BstAPI GCANNNNNTGC 1 cut(s) 1352
BstBAI YACGTR 1 cut(s) 1265
BstC8I GCNNGC 4 cut(s) 442, 950, 1376, 1672
BstDEI CTNAG 7 cut(s) 201, 260, 311, 485, 498, 772, 1436
BstF5I GGATG 6 cut(s) 33, 469, 638, 960, 1051, 1507
BstHHI GCGC 1 cut(s) 847
BstKTI GATC 3 cut(s) 259, 1317, 1412
BstMAI GTCTC 2 cut(s) 558, 924
BstMBI GATC 3 cut(s) 256, 1314, 1409
BstMWI GCNNNNNNNGC 4 cut(s) 231, 290, 983, 1352
BstNI CCWGG 3 cut(s) 780, 876, 1369
BstSCI CCNGG 4 cut(s) 778, 874, 912, 1367
BstSFI CTRYAG 2 cut(s) 1092, 1189
BstV1I GCAGC 3 cut(s) 237, 1515, 1618
BstV2I GAAGAC 2 cut(s) 363, 974
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 2 cut(s) 196, 874
BtgZI GCGATG 1 cut(s) 1587
BtsCI GGATG 6 cut(s) 33, 469, 638, 960, 1051, 1507
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 5 cut(s) 115, 603, 1030, 1198, 1276
BveI ACCTGC 1 cut(s) 1665
Cac8I GCNNGC 4 cut(s) 442, 950, 1376, 1672
CaiI CAGNNNCTG 1 cut(s) 1368
CfoI GCGC 1 cut(s) 847
Cfr13I GGNCC 5 cut(s) 755, 797, 872, 1075, 1250
Csp6I GTAC 4 cut(s) 324, 728, 1229, 1365
CviAII CATG 3 cut(s) 857, 993, 1525
CviQI GTAC 4 cut(s) 324, 728, 1229, 1365
DdeI CTNAG 7 cut(s) 201, 260, 311, 485, 498, 772, 1436
DpnI GATC 3 cut(s) 258, 1316, 1411
DpnII GATC 3 cut(s) 256, 1314, 1409
DraIII CACNNNGTG 1 cut(s) 1280
DriI GACNNNNNGTC 1 cut(s) 916
Eam1104I CTCTTC 2 cut(s) 449, 1203
Eam1105I GACNNNNNGTC 1 cut(s) 916
EarI CTCTTC 2 cut(s) 449, 1203
Eco130I CCWWGG 2 cut(s) 800, 1128
Eco47I GGWCC 4 cut(s) 755, 797, 1075, 1250
Eco57I CTGAAG 2 cut(s) 966, 986
EcoRII CCWGG 3 cut(s) 778, 874, 1367
EcoT14I CCWWGG 2 cut(s) 800, 1128
EcoT22I ATGCAT 1 cut(s) 1051
ErhI CCWWGG 2 cut(s) 800, 1128
FaeI CATG 3 cut(s) 860, 996, 1528
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FaqI GGGAC 1 cut(s) 584
FatI CATG 3 cut(s) 856, 992, 1524
FauNDI CATATG 1 cut(s) 1416
FbaI TGATCA 1 cut(s) 1314
Fnu4HI GCNGC 3 cut(s) 226, 1529, 1607
FokI GGATG 6 cut(s) 40, 476, 645, 947, 1058, 1514
Fsp4HI GCNGC 3 cut(s) 226, 1529, 1607
FspBI CTAG 1 cut(s) 869
GlaI GCGC 1 cut(s) 846
GluI GCNGC 3 cut(s) 226, 1529, 1607
GsaI CCCAGC 2 cut(s) 232, 1670
GsuI CTGGAG 3 cut(s) 37, 801, 1390
HaeIII GGCC 2 cut(s) 196, 874
HapII CCGG 1 cut(s) 914
HhaI GCGC 1 cut(s) 847
Hin1II CATG 3 cut(s) 860, 996, 1528
Hin6I GCGC 1 cut(s) 845
HinP1I GCGC 1 cut(s) 845
HindIII AAGCTT 3 cut(s) 117, 291, 950
HinfI GANTC 8 cut(s) 382, 587, 704, 904, 917, 1004, 1549, 1556
HpaII CCGG 1 cut(s) 914
HphI GGTGA 4 cut(s) 291, 428, 568, 1475
Hpy166II GTNNAC 4 cut(s) 937, 1151, 1250, 1645
Hpy188I TCNGA 2 cut(s) 85, 486
Hpy8I GTNNAC 4 cut(s) 937, 1151, 1250, 1645
HpyAV CCTTC 5 cut(s) 80, 487, 655, 1366, 1414
HpyCH4III ACNGT 6 cut(s) 607, 1025, 1193, 1280, 1336, 1364
HpyCH4IV ACGT 2 cut(s) 1264, 1656
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 290, 983, 1352
HpyF3I CTNAG 7 cut(s) 201, 260, 311, 485, 498, 772, 1436
HpySE526I ACGT 2 cut(s) 1264, 1656
Hsp92II CATG 3 cut(s) 860, 996, 1528
HspAI GCGC 1 cut(s) 845
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 1314
Kzo9I GATC 3 cut(s) 256, 1314, 1409
LguI GCTCTTC 1 cut(s) 1203
LmnI GCTCC 3 cut(s) 637, 1371, 1627
Lsp1109I GCAGC 3 cut(s) 237, 1515, 1618
LweI GCATC 2 cut(s) 832, 1036
MaeI CTAG 1 cut(s) 869
MaeII ACGT 2 cut(s) 1264, 1656
MaeIII GTNAC 4 cut(s) 209, 719, 1039, 1463
MalI GATC 3 cut(s) 258, 1316, 1411
MboI GATC 3 cut(s) 256, 1314, 1409
MboII GAAGA 7 cut(s) 176, 368, 466, 979, 1190, 1233, 1490
MfeI CAATTG 2 cut(s) 558, 1632
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 1198
MluCI AATT 6 cut(s) 129, 250, 558, 1597, 1614, 1632
MlyI GAGTC 1 cut(s) 926
MmeI TCCRAC 1 cut(s) 649
Mph1103I ATGCAT 1 cut(s) 1051
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 6 cut(s) 249, 432, 515, 1214, 1428, 1533
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 1 cut(s) 914
MspR9I CCNGG 4 cut(s) 780, 876, 914, 1369
MunI CAATTG 2 cut(s) 558, 1632
Mva1269I GAATGC 1 cut(s) 1049
MvaI CCWGG 3 cut(s) 780, 876, 1369
MwoI GCNNNNNNNGC 4 cut(s) 231, 290, 983, 1352
NciI CCSGG 1 cut(s) 914
NdeI CATATG 1 cut(s) 1416
NdeII GATC 3 cut(s) 256, 1314, 1409
NlaIII CATG 3 cut(s) 860, 996, 1528
NlaIV GGNNCC 2 cut(s) 325, 1208
NmuCI GTSAC 3 cut(s) 209, 1039, 1463
NsiI ATGCAT 1 cut(s) 1051
PciSI GCTCTTC 1 cut(s) 1203
PctI GAATGC 1 cut(s) 1049
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 7 cut(s) 382, 587, 704, 904, 1004, 1549, 1556
PflMI CCANNNNNTGG 1 cut(s) 1502
PkrI GCNGC 3 cut(s) 227, 1530, 1608
PleI GAGTC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 925
Ppu21I YACGTR 1 cut(s) 1265
PshBI ATTAAT 1 cut(s) 1214
Psp6I CCWGG 3 cut(s) 778, 874, 1367
PspFI CCCAGC 2 cut(s) 228, 1666
PspGI CCWGG 3 cut(s) 778, 874, 1367
PspN4I GGNNCC 2 cut(s) 325, 1208
PspPI GGNCC 5 cut(s) 755, 797, 872, 1075, 1250
PstI CTGCAG 1 cut(s) 1096
PstNI CAGNNNCTG 1 cut(s) 1368
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 228
RsaI GTAC 4 cut(s) 325, 729, 1230, 1366
RsaNI GTAC 4 cut(s) 324, 728, 1229, 1365
SapI GCTCTTC 1 cut(s) 1203
SaqAI TTAA 6 cut(s) 249, 432, 515, 1214, 1428, 1533
SatI GCNGC 3 cut(s) 226, 1529, 1607
Sau3AI GATC 3 cut(s) 256, 1314, 1409
Sau96I GGNCC 5 cut(s) 755, 797, 872, 1075, 1250
SchI GAGTC 1 cut(s) 926
ScrFI CCNGG 4 cut(s) 780, 876, 914, 1369
SduI GDGCHC 1 cut(s) 1198
SfaNI GCATC 2 cut(s) 832, 1036
SfcI CTRYAG 2 cut(s) 1092, 1189
SinI GGWCC 4 cut(s) 755, 797, 1075, 1250
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 6 cut(s) 129, 250, 558, 1597, 1614, 1632
SspMI CTAG 1 cut(s) 869
StyD4I CCNGG 4 cut(s) 778, 874, 912, 1367
StyI CCWWGG 2 cut(s) 800, 1128
TaaI ACNGT 6 cut(s) 607, 1025, 1193, 1280, 1336, 1364
TaiI ACGT 2 cut(s) 1267, 1659
TaqI TCGA 1 cut(s) 598
TaqII GACCGA 1 cut(s) 1267
TasI AATT 6 cut(s) 129, 250, 558, 1597, 1614, 1632
TatI WGTACW 2 cut(s) 727, 1228
TfiI GAWTC 7 cut(s) 382, 587, 704, 904, 1004, 1549, 1556
Tru1I TTAA 6 cut(s) 249, 432, 515, 1214, 1428, 1533
Tru9I TTAA 6 cut(s) 249, 432, 515, 1214, 1428, 1533
TscAI CASTG 5 cut(s) 115, 610, 1030, 1198, 1283
TseFI GTSAC 3 cut(s) 209, 1039, 1463
TseI GCWGC 3 cut(s) 225, 1528, 1606
Tsp45I GTSAC 3 cut(s) 209, 1039, 1463
TspDTI ATGAA 9 cut(s) 55, 59, 177, 467, 480, 583, 1433, 1548, 1590
TspGWI ACGGA 1 cut(s) 1058
TspRI CASTG 5 cut(s) 115, 610, 1030, 1198, 1283
Van91I CCANNNNNTGG 1 cut(s) 1502
VpaK11BI GGWCC 4 cut(s) 755, 797, 1075, 1250
VspI ATTAAT 1 cut(s) 1214
XapI RAATTY 1 cut(s) 1597
XcmI CCANNNNNNNNNTGG 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 1 cut(s) 869
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.