FvH4_2g28730

heparanase-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
22454127 .. 22459349
5223 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28730.t1

Sequence Viewer

Length: 1599 bp
ATGCGTTCTCTGGTTCTTCTCTTCTTCGTTTTCTGCTGGCTGTACGAAGTCACTCACTGCCGCAACTCCATCTCTGTGGCTTCACAGAGCACGGCGGCAGACACTGTCTTTGTCAATGGAACAGCGGCAATCGGAAGCATAGATGATGACTTTGTTTGTGCTACACTGGATTGGTGGCCGCCGGAGAAATGCGATTATGGAACTTGTAGCTGGGGCAATGCTTCTCTTCTTAATCTAGACCTTGGCAATGATATACTTTTAAATGCAATAAAAGCATTTTCACCCTTGAAACTTAGGCTGGGTGGCACCTTGCAAGACAAAGTCATATACCAGACAGAAGACGGTCCAAAACATACTTCATTTGTTAAAGATAGTTCACAGTTGTTTGGCTTTTCTGATGGTTACTTACCTATGCCTAGATGGGATGAACTAAACATTTTCTTCAAGAATGCCGGGGCTGTTATTATATTTGGACTAAATGCACTGCAAGGCAGGACCATAGATTCCCATGGTGTTGCTGTGGGTGATTGGAATGCGAGTAATGCTGAATCCTTTATAAGATATACAGTCAACAAAGGATACACAATTCATGGTTGGGAGCTAGGAAATGAACTATGTGGGAGTGGAGTTGGAACAAGAGTGACAGCAGTCCAGTACGCTTCAGACATAAACTCTCTTCAAAACAAGGTGCGAGATATTTATTCAGGTTCTGCATTAGCTAAGCCACTAGTCTTGGCACCAGGAGGGTTCTTTGATTCCAAATGGTTCTCAGATTTTGTTCACAAAGCACCTCAGTCTGTTCAAGTACTCACTCACCACATATATAACCTTGGTCCAGGTAGTGCAACAGATCTTGTCGACAAGATTCTCAATCCATCTGTTCTTGATGGTATTTCCAAAACCTTCAGTGACTTACAGATGCTAGTTAAGAGTTCGCATACTTCAGCTGTGGCATGGGTTGGTGAATCAGGAGGGGCTTACAACAGTGGTCACAATCTGGTTACAAGTGCATTTGTATTCAGTTTCTGGTACCTGGACCAGCTTGGGATGTCAGCATCTTATGATACCAAAACATATTGCAGACAAACACTCATTGGTGGAAATTATGGCCTCCTTGACATCAATACCTTTAAACCAAATCCTGATTATTACAGTGCTCTTCTTTGGCAACGACTAATGGGAAACAATGTTCTCTCAACAAGCTTCTCCGGGACAAAGAAACTGCGCACTTATGCTCATTGTTCCAAGAAAACACAAGGAATCACAGTGCTGCTCATCAACCTAGGTAACACGACAGTTCAAGTTGATGTTTCAACTAAAAATGGTGGCAGCCGCAGTACCTTGAATTTCAAAGAAGGCCTAAAAGATTCTAAAGCAACCAAGAACGATGTCAGAGAAGAATACCACATAACAGCTAAAGATGGGGACTTGCTCAGCCGAGTAATACTTCTGAATGGGAAAGAACTAACTGTAAATTCAGCAGGGCAAATCCCAAGCTTGGAGCCAATGATAGTAGAAATATCAGATCCCACATCTGTGGCACCTTTCTCTATTGTATTTGTTCACATTCCCAACATAACTGTACCTGCTTGTAAATAG

Protein Analysis

533

Amino Acids

58.07

Weight (kDa)

6.31

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 35 - 349 3.1e-148 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
Acc16I TGCGCA 1 cut(s) 1226
Acc36I ACCTGC 1 cut(s) 1594
Acc65I GGTACC 1 cut(s) 1029
AccB1I GGYRCC 4 cut(s) 305, 736, 1029, 1540
AccI GTMKAC 1 cut(s) 858
AciI CCGC 5 cut(s) 61, 95, 125, 179, 1333
AclWI GGATC 1 cut(s) 1520
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 2 cut(s) 1345, 1474
AcuI CTGAAG 3 cut(s) 645, 889, 927
AfaI GTAC 6 cut(s) 44, 656, 807, 1031, 1339, 1584
AfiI CCNNNNNNNGG 1 cut(s) 1498
AgsI TTSAA 8 cut(s) 289, 445, 680, 803, 1301, 1314, 1345, 1351
AhlI ACTAGT 1 cut(s) 727
AjnI CCWGG 3 cut(s) 739, 835, 1032
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AleI CACNNNNGTG 1 cut(s) 1535
AloI GAACNNNNNNTCC 2 cut(s) 1173, 1205
AluBI AGCT 8 cut(s) 210, 601, 719, 947, 1042, 1203, 1415, 1497
AluI AGCT 8 cut(s) 210, 601, 719, 947, 1042, 1203, 1415, 1497
Alw21I GWGCWC 2 cut(s) 92, 1159
AlwI GGATC 1 cut(s) 1520
AlwNI CAGNNNCTG 3 cut(s) 104, 710, 1026
AoxI GGCC 3 cut(s) 176, 1108, 1357
ApeKI GCWGC 2 cut(s) 1270, 1329
ApoI RAATTY 2 cut(s) 1345, 1474
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp718I GGTACC 1 cut(s) 1029
AspA2I CCTAGG 1 cut(s) 1282
AspLEI GCGC 1 cut(s) 1227
AspS9I GGNCC 4 cut(s) 344, 495, 833, 1036
AsuC2I CCSGG 2 cut(s) 454, 1210
AsuHPI GGTGA 4 cut(s) 273, 536, 806, 974
AvaII GGWCC 4 cut(s) 344, 495, 833, 1036
AvrII CCTAGG 1 cut(s) 1282
BanI GGYRCC 4 cut(s) 305, 736, 1029, 1540
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 2 cut(s) 92, 1159
BbvI GCAGC 2 cut(s) 1257, 1341
BccI CCATC 6 cut(s) 77, 392, 414, 881, 883, 1415
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 3 cut(s) 741, 837, 1034
BciVI GTATCC 1 cut(s) 572
BcnI CCSGG 2 cut(s) 454, 1210
BcuI ACTAGT 1 cut(s) 727
BfaI CTAG 6 cut(s) 236, 417, 602, 728, 923, 1283
BfuAI ACCTGC 1 cut(s) 1594
BfuI GTATCC 1 cut(s) 572
BglII AGATCT 1 cut(s) 850
BisI GCNGC 7 cut(s) 61, 96, 126, 179, 1271, 1330, 1333
BlnI CCTAGG 1 cut(s) 1282
BlpI GCTNAGC 2 cut(s) 720, 1433
BlsI GCNGC 7 cut(s) 62, 97, 127, 180, 1272, 1331, 1334
BmcAI AGTACT 1 cut(s) 807
Bme1390I CCNGG 5 cut(s) 454, 741, 837, 1034, 1210
Bme18I GGWCC 4 cut(s) 344, 495, 833, 1036
BmgT120I GGNCC 4 cut(s) 344, 495, 833, 1036
BmiI GGNNCC 5 cut(s) 307, 738, 1031, 1503, 1542
BmrFI CCNGG 5 cut(s) 454, 741, 837, 1034, 1210
BmsI GCATC 2 cut(s) 909, 1064
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 345
Bpu1102I GCTNAGC 2 cut(s) 720, 1433
BpuMI CCSGG 2 cut(s) 454, 1210
BsaJI CCNNGG 5 cut(s) 241, 453, 508, 829, 1282
Bsc4I CCNNNNNNNGG 1 cut(s) 1498
Bse1I ACTGG 2 cut(s) 171, 652
Bse3DI GCAATG 2 cut(s) 223, 253
BseBI CCWGG 3 cut(s) 741, 837, 1034
BseDI CCNNGG 5 cut(s) 241, 453, 508, 829, 1282
BseGI GGATG 2 cut(s) 430, 1053
BseLI CCNNNNNNNGG 1 cut(s) 1498
BseMI GCAATG 2 cut(s) 223, 253
BseMII CTCAG 3 cut(s) 783, 806, 1447
BseNI ACTGG 2 cut(s) 171, 652
BseXI GCAGC 2 cut(s) 1257, 1341
BseYI CCCAGC 2 cut(s) 210, 298
BshFI GGCC 3 cut(s) 178, 1110, 1359
BshNI GGYRCC 4 cut(s) 305, 736, 1029, 1540
BsiHKAI GWGCWC 2 cut(s) 92, 1159
BsiSI CCGG 3 cut(s) 182, 453, 1209
BslFI GGGAC 2 cut(s) 1225, 1439
BslI CCNNNNNNNGG 1 cut(s) 1498
BsmFI GGGAC 2 cut(s) 1225, 1439
BsmI GAATGC 2 cut(s) 454, 538
BsnI GGCC 3 cut(s) 178, 1110, 1359
Bsp1286I GDGCHC 2 cut(s) 92, 1159
Bsp143I GATC 2 cut(s) 850, 1525
Bsp1720I GCTNAGC 2 cut(s) 720, 1433
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 5 cut(s) 61, 95, 125, 179, 1333
BspANI GGCC 3 cut(s) 178, 1110, 1359
BspCNI CTCAG 3 cut(s) 782, 805, 1446
BspLI GGNNCC 5 cut(s) 307, 738, 1031, 1503, 1542
BspMI ACCTGC 1 cut(s) 1594
BspPI GGATC 1 cut(s) 1520
BspQI GCTCTTC 1 cut(s) 1164
BspT107I GGYRCC 4 cut(s) 305, 736, 1029, 1540
BsrDI GCAATG 2 cut(s) 223, 253
BsrI ACTGG 2 cut(s) 171, 652
BssECI CCNNGG 5 cut(s) 241, 453, 508, 829, 1282
BssMI GATC 2 cut(s) 850, 1525
BssT1I CCWWGG 4 cut(s) 241, 508, 829, 1282
Bst2UI CCWGG 3 cut(s) 741, 837, 1034
Bst6I CTCTTC 4 cut(s) 26, 231, 681, 1164
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 5 cut(s) 293, 720, 769, 792, 1433
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 430, 1053
BstHHI GCGC 1 cut(s) 1227
BstKTI GATC 2 cut(s) 853, 1528
BstMBI GATC 2 cut(s) 850, 1525
BstMWI GCNNNNNNNGC 2 cut(s) 272, 542
BstNI CCWGG 3 cut(s) 741, 837, 1034
BstPAI GACNNNNGTC 1 cut(s) 647
BstSCI CCNGG 5 cut(s) 452, 739, 835, 1032, 1208
BstV1I GCAGC 2 cut(s) 1257, 1341
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 850, 1525
BstXI CCANNNNNNTGG 2 cut(s) 76, 1537
BstYI RGATCY 2 cut(s) 850, 1525
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 3 cut(s) 178, 1110, 1359
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 2 cut(s) 430, 1053
BtsI GCAGTG 2 cut(s) 55, 482
BtsIMutI CAGTG 8 cut(s) 55, 102, 164, 482, 913, 991, 1159, 1272
BveI ACCTGC 1 cut(s) 1594
Cac8I GCNNGC 1 cut(s) 38
CaiI CAGNNNCTG 3 cut(s) 104, 710, 1026
CfoI GCGC 1 cut(s) 1227
Cfr13I GGNCC 4 cut(s) 344, 495, 833, 1036
Csp6I GTAC 6 cut(s) 43, 655, 806, 1030, 1338, 1583
CspCI CAANNNNNGTGG 2 cut(s) 714, 749
CviAII CATG 3 cut(s) 509, 590, 954
CviQI GTAC 6 cut(s) 43, 655, 806, 1030, 1338, 1583
DdeI CTNAG 5 cut(s) 293, 720, 769, 792, 1433
DpnI GATC 2 cut(s) 852, 1527
DpnII GATC 2 cut(s) 850, 1525
DraI TTTAAA 2 cut(s) 261, 1132
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 4 cut(s) 26, 231, 681, 1164
EarI CTCTTC 4 cut(s) 26, 231, 681, 1164
Eco130I CCWWGG 4 cut(s) 241, 508, 829, 1282
Eco147I AGGCCT 1 cut(s) 1359
Eco47I GGWCC 4 cut(s) 344, 495, 833, 1036
Eco57I CTGAAG 3 cut(s) 645, 889, 927
EcoRII CCWGG 3 cut(s) 739, 835, 1032
EcoT14I CCWWGG 4 cut(s) 241, 508, 829, 1282
ErhI CCWWGG 4 cut(s) 241, 508, 829, 1282
FaeI CATG 3 cut(s) 512, 593, 957
FaqI GGGAC 2 cut(s) 1225, 1439
FatI CATG 3 cut(s) 508, 589, 953
FblI GTMKAC 1 cut(s) 858
Fnu4HI GCNGC 7 cut(s) 61, 96, 126, 179, 1271, 1330, 1333
FokI GGATG 2 cut(s) 437, 1060
Fsp4HI GCNGC 7 cut(s) 61, 96, 126, 179, 1271, 1330, 1333
FspBI CTAG 6 cut(s) 236, 417, 602, 728, 923, 1283
FspI TGCGCA 1 cut(s) 1226
GlaI GCGC 1 cut(s) 1226
GluI GCNGC 7 cut(s) 61, 96, 126, 179, 1271, 1330, 1333
GsaI CCCAGC 2 cut(s) 214, 302
HaeIII GGCC 3 cut(s) 178, 1110, 1359
HapII CCGG 3 cut(s) 182, 453, 1209
HhaI GCGC 1 cut(s) 1227
Hin1II CATG 3 cut(s) 512, 593, 957
Hin6I GCGC 1 cut(s) 1225
HinP1I GCGC 1 cut(s) 1225
HincII GTYRAC 2 cut(s) 571, 859
HindII GTYRAC 2 cut(s) 571, 859
HindIII AAGCTT 2 cut(s) 1201, 1495
HinfI GANTC 7 cut(s) 503, 548, 755, 865, 965, 1260, 1367
HpaII CCGG 3 cut(s) 182, 453, 1209
HphI GGTGA 4 cut(s) 273, 536, 806, 974
Hpy166II GTNNAC 5 cut(s) 377, 571, 781, 859, 1564
Hpy188I TCNGA 7 cut(s) 134, 397, 664, 772, 1394, 1452, 1525
Hpy188III TCNNGA 5 cut(s) 236, 445, 884, 969, 1142
Hpy8I GTNNAC 5 cut(s) 377, 571, 781, 859, 1564
HpyAV CCTTC 2 cut(s) 913, 1349
HpyCH4V TGCA 8 cut(s) 266, 313, 482, 487, 713, 845, 1010, 1080
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 542
HpyF3I CTNAG 5 cut(s) 293, 720, 769, 792, 1433
Hsp92II CATG 3 cut(s) 512, 593, 957
HspAI GCGC 1 cut(s) 1225
KpnI GGTACC 1 cut(s) 1033
Kzo9I GATC 2 cut(s) 850, 1525
LguI GCTCTTC 1 cut(s) 1164
LmnI GCTCC 2 cut(s) 598, 1501
Lsp1109I GCAGC 2 cut(s) 1257, 1341
LweI GCATC 2 cut(s) 909, 1064
MaeI CTAG 6 cut(s) 236, 417, 602, 728, 923, 1283
MaeIII GTNAC 7 cut(s) 49, 401, 640, 908, 989, 1000, 1286
MalI GATC 2 cut(s) 852, 1527
MboI GATC 2 cut(s) 850, 1525
MboII GAAGA 9 cut(s) 8, 13, 16, 218, 350, 433, 668, 1151, 1409
MflI RGATCY 2 cut(s) 850, 1525
MhlI GDGCHC 2 cut(s) 92, 1159
MluCI AATT 4 cut(s) 585, 1102, 1345, 1474
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 4 cut(s) 737, 801, 965, 1121
MseI TTAA 5 cut(s) 231, 260, 366, 927, 1131
MslI CAYNNNNRTG 2 cut(s) 74, 1535
MspA1I CMGCKG 2 cut(s) 125, 947
MspI CCGG 3 cut(s) 182, 453, 1209
MspR9I CCNGG 5 cut(s) 454, 741, 837, 1034, 1210
Mva1269I GAATGC 2 cut(s) 454, 538
MvaI CCWGG 3 cut(s) 741, 837, 1034
MwoI GCNNNNNNNGC 2 cut(s) 272, 542
NciI CCSGG 2 cut(s) 454, 1210
NcoI CCATGG 1 cut(s) 508
NdeII GATC 2 cut(s) 850, 1525
NlaIII CATG 3 cut(s) 512, 593, 957
NlaIV GGNNCC 5 cut(s) 307, 738, 1031, 1503, 1542
NmeAIII GCCGAG 1 cut(s) 1463
NmuCI GTSAC 4 cut(s) 49, 640, 908, 989
NsbI TGCGCA 1 cut(s) 1226
OliI CACNNNNGTG 1 cut(s) 1535
PceI AGGCCT 1 cut(s) 1359
PciSI GCTCTTC 1 cut(s) 1164
PctI GAATGC 2 cut(s) 454, 538
PfeI GAWTC 7 cut(s) 503, 548, 755, 865, 965, 1260, 1367
PflFI GACNNNGTC 2 cut(s) 104, 320
PfoI TCCNGGA 1 cut(s) 1208
PkrI GCNGC 7 cut(s) 62, 97, 127, 180, 1272, 1331, 1334
PshAI GACNNNNGTC 1 cut(s) 647
PsiI TTATAA 1 cut(s) 557
Psp6I CCWGG 3 cut(s) 739, 835, 1032
PspFI CCCAGC 2 cut(s) 210, 298
PspGI CCWGG 3 cut(s) 739, 835, 1032
PspN4I GGNNCC 5 cut(s) 307, 738, 1031, 1503, 1542
PspPI GGNCC 4 cut(s) 344, 495, 833, 1036
PstNI CAGNNNCTG 3 cut(s) 104, 710, 1026
PsuI RGATCY 2 cut(s) 850, 1525
PsyI GACNNNGTC 2 cut(s) 104, 320
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 6 cut(s) 44, 656, 807, 1031, 1339, 1584
RsaNI GTAC 6 cut(s) 43, 655, 806, 1030, 1338, 1583
RseI CAYNNNNRTG 2 cut(s) 74, 1535
SalI GTCGAC 1 cut(s) 857
SapI GCTCTTC 1 cut(s) 1164
SaqAI TTAA 5 cut(s) 231, 260, 366, 927, 1131
SatI GCNGC 7 cut(s) 61, 96, 126, 179, 1271, 1330, 1333
Sau3AI GATC 2 cut(s) 850, 1525
Sau96I GGNCC 4 cut(s) 344, 495, 833, 1036
ScaI AGTACT 1 cut(s) 807
ScrFI CCNGG 5 cut(s) 454, 741, 837, 1034, 1210
SduI GDGCHC 2 cut(s) 92, 1159
SfaNI GCATC 2 cut(s) 909, 1064
SinI GGWCC 4 cut(s) 344, 495, 833, 1036
SmiMI CAYNNNNRTG 2 cut(s) 74, 1535
SpeI ACTAGT 1 cut(s) 727
Sse9I AATT 4 cut(s) 585, 1102, 1345, 1474
SseBI AGGCCT 1 cut(s) 1359
SsiI CCGC 5 cut(s) 61, 95, 125, 179, 1333
SspMI CTAG 6 cut(s) 236, 417, 602, 728, 923, 1283
StuI AGGCCT 1 cut(s) 1359
StyD4I CCNGG 5 cut(s) 452, 739, 835, 1032, 1208
StyI CCWWGG 4 cut(s) 241, 508, 829, 1282
TaqI TCGA 1 cut(s) 858
TasI AATT 4 cut(s) 585, 1102, 1345, 1474
TatI WGTACW 1 cut(s) 805
TauI GCSGC 5 cut(s) 63, 98, 128, 181, 1335
TfiI GAWTC 7 cut(s) 503, 548, 755, 865, 965, 1260, 1367
Tru1I TTAA 5 cut(s) 231, 260, 366, 927, 1131
Tru9I TTAA 5 cut(s) 231, 260, 366, 927, 1131
TscAI CASTG 8 cut(s) 62, 109, 171, 489, 913, 991, 1159, 1272
TseFI GTSAC 4 cut(s) 49, 640, 908, 989
TseI GCWGC 2 cut(s) 1270, 1329
Tsp45I GTSAC 4 cut(s) 49, 640, 908, 989
TspDTI ATGAA 4 cut(s) 348, 441, 578, 624
TspRI CASTG 8 cut(s) 62, 109, 171, 489, 913, 991, 1159, 1272
Tth111I GACNNNGTC 2 cut(s) 104, 320
VpaK11BI GGWCC 4 cut(s) 344, 495, 833, 1036
XapI RAATTY 2 cut(s) 1345, 1474
XbaI TCTAGA 1 cut(s) 235
XmaJI CCTAGG 1 cut(s) 1282
XmiI GTMKAC 1 cut(s) 858
XspI CTAG 6 cut(s) 236, 417, 602, 728, 923, 1283
ZrmI AGTACT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.