FvH4_2g28720

heparanase-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
22442906 .. 22446190
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28720.t2

Sequence Viewer

Length: 1611 bp
ATGTGTGAAATAATGCGTTCTCTGGGTCTTCTCTTCTTCGTTTTCTGCTGGCTGTACGAAGTCACTCACAGCCGCAACTCCATCTCTGTGGCTTCACAGAGCACGGAGGCAGACACTGTCTTTGTCAATGGAACAGCGGCAATCGGAAGCATAGATGATGACTTTGTTTGTGCTACACTGGATTGGTGGCCGCCGGAGAAATGCGATTATGGAACTTGTAGCTGGGGTAATGCTTCTCTTCTTAATCTAGACCTTGGCAATGATATACTTTTAAATGCAATAAAAGCATTTTCACCCTTGAAACTTAGGCTGGGTGGCACCTTGCAAGACAAAGTCATATACCAGACAGAAGACGGTCCAAAACATACTTCATTTGTTAAAGATAGTTCACAGTTGTTTGGCTTTTCTGATGGTTACTTACCTATGCCTAGATGGGATGAACTAAACATTTTCTTCAAGAATGCCGGGGCTGTTATTATATTTGGACTAAATGCACTGCAAGGCAGGACCATAGATTCCCATGGTGTTGCTGTGGGTGATTGGAATGCGAGTAATGCTGAATCCTTTATAAGATATACAGTCAACAAAGGATACACAATTCATGGTTGGGAGCTAGGAAATGAACTATGTGGGAGTGGAGTTGGAACAAGAGTGACAGCAGTCCAGTACGCTTCAGACATAAACTCTCTTCAAAACAAGGTGCGAGATATTTATTCAGGTTCTGCATTAGCTAAGCCACTAGTCTTGGCACCAGGAGGGTTCTTTGATTCCAAATGGTTCTCAGATTTTGTTCACAAAGCACCTCAGTCTGTTCAAGTACTCACTCACCACATATATAACCTTGGTCCAGGTAGTGCAACAGATCTTGTCGACAAGATTCTCAATCCATCTGTTCTTGATGGTATTTCCAAAACCTTCAGTGACTTACAGATGCTAGTTAAGAGTTCGCATACTTCAGCTGTGGCATGGGTTGGTGAATCAGGAGGGGCTTACAACAGTGGTCACAATCTGGTTACAAATGCATTTGTATTCAGTTTCTGGTACCTGGACCAGCTTGGGATGTCAGCATCTTATGATACCAAAACACATTGCAGACAAACACTCATTGGTGGAAATTATGGCCTCCTTGACATCAATACCTTTAAACCAAATCCTGATTATTACAGTGCTCTTCTTTGGCATCGACTAATGGGAAACAATGTTCTGTCAACAAGCTTCTCCGGGACAAAGAAACTGCGCACTTATGCTCATTGTTCCAAGAAAACACAAGGAATCACAGTGCTGCTTATTAACCTAGGTAACACTACAGTTCAAGTTGATGTTTCAACTAAAAATGGTGGCAGCAGCAGTACCTTGAATTTCGAAGAAGGCCTAAAAGATTCTAAAGCAACCAAGAACGATGTCAGAGAAGAATACCACATAACAGCTAAAGATGGAGACTTGCACAGCCGAGTAATGCTTCTGAATGAGAAAGAACTAACTGTAAATTCAGCAGGGCAAATCCCAAGCTTGGAGCCAATGATAGTAGGAATATCAGATCCCACATCTGTGGCACCTTTCTCTATTGTATTTGTTCACATTCCCAACATAACTGTACCTGCTTGTAAATAG

Protein Analysis

537

Amino Acids

58.53

Weight (kDa)

5.91

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 21 - 294 1.2e-120 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
Acc16I TGCGCA 1 cut(s) 1238
Acc36I ACCTGC 1 cut(s) 1606
Acc65I GGTACC 1 cut(s) 1041
AccB1I GGYRCC 4 cut(s) 317, 748, 1041, 1552
AccI GTMKAC 1 cut(s) 870
AciI CCGC 3 cut(s) 73, 137, 191
AclWI GGATC 1 cut(s) 1532
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 2 cut(s) 1357, 1486
AcuI CTGAAG 3 cut(s) 657, 901, 939
AfaI GTAC 6 cut(s) 56, 668, 819, 1043, 1351, 1596
AfiI CCNNNNNNNGG 1 cut(s) 1510
AgsI TTSAA 7 cut(s) 301, 457, 692, 815, 1313, 1326, 1357
AhlI ACTAGT 1 cut(s) 739
AjnI CCWGG 3 cut(s) 751, 847, 1044
AjuI GAANNNNNNNTTGG 2 cut(s) 352, 384
AleI CACNNNNGTG 1 cut(s) 1547
AloI GAACNNNNNNTCC 2 cut(s) 1185, 1217
AluBI AGCT 8 cut(s) 222, 613, 731, 959, 1054, 1215, 1427, 1509
AluI AGCT 8 cut(s) 222, 613, 731, 959, 1054, 1215, 1427, 1509
Alw21I GWGCWC 2 cut(s) 104, 1171
Alw26I GTCTC 1 cut(s) 1431
AlwI GGATC 1 cut(s) 1532
AlwNI CAGNNNCTG 3 cut(s) 116, 722, 1038
AoxI GGCC 3 cut(s) 188, 1120, 1369
ApeKI GCWGC 3 cut(s) 1282, 1341, 1344
ApoI RAATTY 2 cut(s) 1357, 1486
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
Asp718I GGTACC 1 cut(s) 1041
AspA2I CCTAGG 1 cut(s) 1294
AspLEI GCGC 1 cut(s) 1239
AspS9I GGNCC 4 cut(s) 356, 507, 845, 1048
AsuC2I CCSGG 2 cut(s) 466, 1222
AsuHPI GGTGA 4 cut(s) 285, 548, 818, 986
AsuII TTCGAA 1 cut(s) 1362
AvaII GGWCC 4 cut(s) 356, 507, 845, 1048
AvrII CCTAGG 1 cut(s) 1294
BanI GGYRCC 4 cut(s) 317, 748, 1041, 1552
BbsI GAAGAC 2 cut(s) 20, 357
Bbv12I GWGCWC 2 cut(s) 104, 1171
BbvI GCAGC 3 cut(s) 1269, 1353, 1356
BccI CCATC 6 cut(s) 89, 404, 426, 893, 895, 1427
BciT130I CCWGG 3 cut(s) 753, 849, 1046
BciVI GTATCC 1 cut(s) 584
BcnI CCSGG 2 cut(s) 466, 1222
BcoDI GTCTC 1 cut(s) 1431
BcuI ACTAGT 1 cut(s) 739
BfaI CTAG 6 cut(s) 248, 429, 614, 740, 935, 1295
BfmI CTRYAG 1 cut(s) 1305
BfuAI ACCTGC 1 cut(s) 1606
BfuI GTATCC 1 cut(s) 584
BglII AGATCT 1 cut(s) 862
BisI GCNGC 6 cut(s) 73, 138, 191, 1283, 1342, 1345
BlnI CCTAGG 1 cut(s) 1294
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 6 cut(s) 74, 139, 192, 1284, 1343, 1346
BmcAI AGTACT 1 cut(s) 819
Bme1390I CCNGG 5 cut(s) 466, 753, 849, 1046, 1222
Bme18I GGWCC 4 cut(s) 356, 507, 845, 1048
BmgT120I GGNCC 4 cut(s) 356, 507, 845, 1048
BmiI GGNNCC 5 cut(s) 319, 750, 1043, 1515, 1554
BmrFI CCNGG 5 cut(s) 466, 753, 849, 1046, 1222
BmsI GCATC 3 cut(s) 921, 1076, 1189
BoxI GACNNNNGTC 1 cut(s) 659
BpiI GAAGAC 2 cut(s) 20, 357
Bpu1102I GCTNAGC 1 cut(s) 732
Bpu14I TTCGAA 1 cut(s) 1362
BpuMI CCSGG 2 cut(s) 466, 1222
BsaJI CCNNGG 5 cut(s) 253, 465, 520, 841, 1294
Bsc4I CCNNNNNNNGG 1 cut(s) 1510
Bse1I ACTGG 2 cut(s) 183, 664
Bse3DI GCAATG 2 cut(s) 265, 1087
BseBI CCWGG 3 cut(s) 753, 849, 1046
BseDI CCNNGG 5 cut(s) 253, 465, 520, 841, 1294
BseGI GGATG 2 cut(s) 442, 1065
BseLI CCNNNNNNNGG 1 cut(s) 1510
BseMI GCAATG 2 cut(s) 265, 1087
BseMII CTCAG 2 cut(s) 795, 818
BseNI ACTGG 2 cut(s) 183, 664
BseXI GCAGC 3 cut(s) 1269, 1353, 1356
BseYI CCCAGC 2 cut(s) 222, 310
BshFI GGCC 3 cut(s) 190, 1122, 1371
BshNI GGYRCC 4 cut(s) 317, 748, 1041, 1552
BsiHKAI GWGCWC 2 cut(s) 104, 1171
BsiSI CCGG 3 cut(s) 194, 465, 1221
BslFI GGGAC 1 cut(s) 1237
BslI CCNNNNNNNGG 1 cut(s) 1510
BsmAI GTCTC 1 cut(s) 1431
BsmFI GGGAC 1 cut(s) 1237
BsmI GAATGC 2 cut(s) 466, 550
BsnI GGCC 3 cut(s) 190, 1122, 1371
Bsp119I TTCGAA 1 cut(s) 1362
Bsp1286I GDGCHC 2 cut(s) 104, 1171
Bsp143I GATC 2 cut(s) 862, 1537
Bsp1720I GCTNAGC 1 cut(s) 732
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 3 cut(s) 73, 137, 191
BspANI GGCC 3 cut(s) 190, 1122, 1371
BspCNI CTCAG 2 cut(s) 794, 817
BspLI GGNNCC 5 cut(s) 319, 750, 1043, 1515, 1554
BspMI ACCTGC 1 cut(s) 1606
BspPI GGATC 1 cut(s) 1532
BspQI GCTCTTC 1 cut(s) 1176
BspT104I TTCGAA 1 cut(s) 1362
BspT107I GGYRCC 4 cut(s) 317, 748, 1041, 1552
BsrDI GCAATG 2 cut(s) 265, 1087
BsrI ACTGG 2 cut(s) 183, 664
BssECI CCNNGG 5 cut(s) 253, 465, 520, 841, 1294
BssMI GATC 2 cut(s) 862, 1537
BssT1I CCWWGG 4 cut(s) 253, 520, 841, 1294
Bst2UI CCWGG 3 cut(s) 753, 849, 1046
Bst6I CTCTTC 4 cut(s) 38, 243, 693, 1176
BstBI TTCGAA 1 cut(s) 1362
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 4 cut(s) 305, 732, 781, 804
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 2 cut(s) 442, 1065
BstHHI GCGC 1 cut(s) 1239
BstKTI GATC 2 cut(s) 865, 1540
BstMAI GTCTC 1 cut(s) 1431
BstMBI GATC 2 cut(s) 862, 1537
BstMWI GCNNNNNNNGC 2 cut(s) 284, 554
BstNI CCWGG 3 cut(s) 753, 849, 1046
BstPAI GACNNNNGTC 1 cut(s) 659
BstSCI CCNGG 5 cut(s) 464, 751, 847, 1044, 1220
BstSFI CTRYAG 1 cut(s) 1305
BstV1I GCAGC 3 cut(s) 1269, 1353, 1356
BstV2I GAAGAC 2 cut(s) 20, 357
BstX2I RGATCY 2 cut(s) 862, 1537
BstXI CCANNNNNNTGG 2 cut(s) 88, 1549
BstYI RGATCY 2 cut(s) 862, 1537
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 3 cut(s) 190, 1122, 1371
BtgI CCRYGG 1 cut(s) 520
BtsCI GGATG 2 cut(s) 442, 1065
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 7 cut(s) 114, 176, 494, 925, 1003, 1171, 1284
BveI ACCTGC 1 cut(s) 1606
Cac8I GCNNGC 1 cut(s) 50
CaiI CAGNNNCTG 3 cut(s) 116, 722, 1038
CfoI GCGC 1 cut(s) 1239
Cfr13I GGNCC 4 cut(s) 356, 507, 845, 1048
Csp6I GTAC 6 cut(s) 55, 667, 818, 1042, 1350, 1595
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 3 cut(s) 521, 602, 966
CviQI GTAC 6 cut(s) 55, 667, 818, 1042, 1350, 1595
DdeI CTNAG 4 cut(s) 305, 732, 781, 804
DpnI GATC 2 cut(s) 864, 1539
DpnII GATC 2 cut(s) 862, 1537
DraI TTTAAA 2 cut(s) 273, 1144
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 4 cut(s) 38, 243, 693, 1176
EarI CTCTTC 4 cut(s) 38, 243, 693, 1176
Eco130I CCWWGG 4 cut(s) 253, 520, 841, 1294
Eco147I AGGCCT 1 cut(s) 1371
Eco47I GGWCC 4 cut(s) 356, 507, 845, 1048
Eco57I CTGAAG 3 cut(s) 657, 901, 939
EcoRII CCWGG 3 cut(s) 751, 847, 1044
EcoT14I CCWWGG 4 cut(s) 253, 520, 841, 1294
EcoT22I ATGCAT 1 cut(s) 1024
ErhI CCWWGG 4 cut(s) 253, 520, 841, 1294
FaeI CATG 3 cut(s) 524, 605, 969
FaqI GGGAC 1 cut(s) 1237
FatI CATG 3 cut(s) 520, 601, 965
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 6 cut(s) 73, 138, 191, 1283, 1342, 1345
FokI GGATG 2 cut(s) 449, 1072
Fsp4HI GCNGC 6 cut(s) 73, 138, 191, 1283, 1342, 1345
FspBI CTAG 6 cut(s) 248, 429, 614, 740, 935, 1295
FspI TGCGCA 1 cut(s) 1238
GlaI GCGC 1 cut(s) 1238
GluI GCNGC 6 cut(s) 73, 138, 191, 1283, 1342, 1345
GsaI CCCAGC 2 cut(s) 226, 314
HaeIII GGCC 3 cut(s) 190, 1122, 1371
HapII CCGG 3 cut(s) 194, 465, 1221
HhaI GCGC 1 cut(s) 1239
Hin1II CATG 3 cut(s) 524, 605, 969
Hin6I GCGC 1 cut(s) 1237
HinP1I GCGC 1 cut(s) 1237
HincII GTYRAC 3 cut(s) 583, 871, 1209
HindII GTYRAC 3 cut(s) 583, 871, 1209
HindIII AAGCTT 2 cut(s) 1213, 1507
HinfI GANTC 7 cut(s) 515, 560, 767, 877, 977, 1272, 1379
HpaII CCGG 3 cut(s) 194, 465, 1221
HphI GGTGA 4 cut(s) 285, 548, 818, 986
Hpy166II GTNNAC 6 cut(s) 389, 583, 793, 871, 1209, 1576
Hpy188I TCNGA 7 cut(s) 146, 409, 676, 784, 1406, 1464, 1537
Hpy188III TCNNGA 5 cut(s) 248, 457, 896, 981, 1154
Hpy8I GTNNAC 6 cut(s) 389, 583, 793, 871, 1209, 1576
HpyAV CCTTC 2 cut(s) 925, 1361
HpyCH4V TGCA 9 cut(s) 278, 325, 494, 499, 725, 857, 1022, 1092, 1444
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 554
HpyF3I CTNAG 4 cut(s) 305, 732, 781, 804
Hsp92II CATG 3 cut(s) 524, 605, 969
HspAI GCGC 1 cut(s) 1237
KpnI GGTACC 1 cut(s) 1045
Kzo9I GATC 2 cut(s) 862, 1537
LguI GCTCTTC 1 cut(s) 1176
LmnI GCTCC 2 cut(s) 610, 1513
Lsp1109I GCAGC 3 cut(s) 1269, 1353, 1356
LweI GCATC 3 cut(s) 921, 1076, 1189
MaeI CTAG 6 cut(s) 248, 429, 614, 740, 935, 1295
MaeIII GTNAC 7 cut(s) 61, 413, 652, 920, 1001, 1012, 1298
MalI GATC 2 cut(s) 864, 1539
MboI GATC 2 cut(s) 862, 1537
MflI RGATCY 2 cut(s) 862, 1537
MhlI GDGCHC 2 cut(s) 104, 1171
MluCI AATT 4 cut(s) 597, 1114, 1357, 1486
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 5 cut(s) 100, 749, 813, 977, 1133
Mph1103I ATGCAT 1 cut(s) 1024
MseI TTAA 6 cut(s) 243, 272, 378, 939, 1143, 1290
MslI CAYNNNNRTG 2 cut(s) 86, 1547
MspA1I CMGCKG 2 cut(s) 137, 959
MspI CCGG 3 cut(s) 194, 465, 1221
MspR9I CCNGG 5 cut(s) 466, 753, 849, 1046, 1222
Mva1269I GAATGC 2 cut(s) 466, 550
MvaI CCWGG 3 cut(s) 753, 849, 1046
MwoI GCNNNNNNNGC 2 cut(s) 284, 554
NciI CCSGG 2 cut(s) 466, 1222
NcoI CCATGG 1 cut(s) 520
NdeII GATC 2 cut(s) 862, 1537
NlaIII CATG 3 cut(s) 524, 605, 969
NlaIV GGNNCC 5 cut(s) 319, 750, 1043, 1515, 1554
NmeAIII GCCGAG 1 cut(s) 1475
NmuCI GTSAC 4 cut(s) 61, 652, 920, 1001
NsbI TGCGCA 1 cut(s) 1238
NsiI ATGCAT 1 cut(s) 1024
NspV TTCGAA 1 cut(s) 1362
OliI CACNNNNGTG 1 cut(s) 1547
PceI AGGCCT 1 cut(s) 1371
PciSI GCTCTTC 1 cut(s) 1176
PctI GAATGC 2 cut(s) 466, 550
PfeI GAWTC 7 cut(s) 515, 560, 767, 877, 977, 1272, 1379
PflFI GACNNNGTC 2 cut(s) 116, 332
PfoI TCCNGGA 1 cut(s) 1220
PkrI GCNGC 6 cut(s) 74, 139, 192, 1284, 1343, 1346
PshAI GACNNNNGTC 1 cut(s) 659
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 3 cut(s) 751, 847, 1044
PspFI CCCAGC 2 cut(s) 222, 310
PspGI CCWGG 3 cut(s) 751, 847, 1044
PspN4I GGNNCC 5 cut(s) 319, 750, 1043, 1515, 1554
PspPI GGNCC 4 cut(s) 356, 507, 845, 1048
PstNI CAGNNNCTG 3 cut(s) 116, 722, 1038
PsuI RGATCY 2 cut(s) 862, 1537
PsyI GACNNNGTC 2 cut(s) 116, 332
PvuII CAGCTG 1 cut(s) 959
RsaI GTAC 6 cut(s) 56, 668, 819, 1043, 1351, 1596
RsaNI GTAC 6 cut(s) 55, 667, 818, 1042, 1350, 1595
RseI CAYNNNNRTG 2 cut(s) 86, 1547
SalI GTCGAC 1 cut(s) 869
SapI GCTCTTC 1 cut(s) 1176
SaqAI TTAA 6 cut(s) 243, 272, 378, 939, 1143, 1290
SatI GCNGC 6 cut(s) 73, 138, 191, 1283, 1342, 1345
Sau3AI GATC 2 cut(s) 862, 1537
Sau96I GGNCC 4 cut(s) 356, 507, 845, 1048
ScaI AGTACT 1 cut(s) 819
ScrFI CCNGG 5 cut(s) 466, 753, 849, 1046, 1222
SduI GDGCHC 2 cut(s) 104, 1171
SfaNI GCATC 3 cut(s) 921, 1076, 1189
SfcI CTRYAG 1 cut(s) 1305
SfuI TTCGAA 1 cut(s) 1362
SinI GGWCC 4 cut(s) 356, 507, 845, 1048
SmiMI CAYNNNNRTG 2 cut(s) 86, 1547
SpeI ACTAGT 1 cut(s) 739
Sse9I AATT 4 cut(s) 597, 1114, 1357, 1486
SseBI AGGCCT 1 cut(s) 1371
SsiI CCGC 3 cut(s) 73, 137, 191
SspMI CTAG 6 cut(s) 248, 429, 614, 740, 935, 1295
StuI AGGCCT 1 cut(s) 1371
StyD4I CCNGG 5 cut(s) 464, 751, 847, 1044, 1220
StyI CCWWGG 4 cut(s) 253, 520, 841, 1294
TaqI TCGA 3 cut(s) 870, 1183, 1362
TasI AATT 4 cut(s) 597, 1114, 1357, 1486
TatI WGTACW 1 cut(s) 817
TauI GCSGC 3 cut(s) 75, 140, 193
TfiI GAWTC 7 cut(s) 515, 560, 767, 877, 977, 1272, 1379
Tru1I TTAA 6 cut(s) 243, 272, 378, 939, 1143, 1290
Tru9I TTAA 6 cut(s) 243, 272, 378, 939, 1143, 1290
TscAI CASTG 7 cut(s) 121, 183, 501, 925, 1003, 1171, 1284
TseFI GTSAC 4 cut(s) 61, 652, 920, 1001
TseI GCWGC 3 cut(s) 1282, 1341, 1344
Tsp45I GTSAC 4 cut(s) 61, 652, 920, 1001
TspDTI ATGAA 4 cut(s) 360, 453, 590, 636
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 7 cut(s) 121, 183, 501, 925, 1003, 1171, 1284
Tth111I GACNNNGTC 2 cut(s) 116, 332
VpaK11BI GGWCC 4 cut(s) 356, 507, 845, 1048
XapI RAATTY 2 cut(s) 1357, 1486
XbaI TCTAGA 1 cut(s) 247
XmaJI CCTAGG 1 cut(s) 1294
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 6 cut(s) 248, 429, 614, 740, 935, 1295
ZrmI AGTACT 1 cut(s) 819
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.